HEADER PROTEIN BINDING 05-MAY-20 7C1M TITLE COMPLEX STRUCTURE OF TYROSINATED ALPHA-TUBULIN CARBOXY-TERMINAL TITLE 2 PEPTIDE AND A1AY1 BINDER COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY BINDER FROM SSO7D LIBRARY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CARBOXY-TERMINAL PEPTIDE FROM TYROSINATED ALPHA-TUBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROLOBUS SOLFATARICUS 98/2; SOURCE 3 ORGANISM_TAXID: 555311; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS TYROSINATED, MICROTUBULE, BINDER, SSO7D, YEAST DISPLAY, PROTEIN KEYWDS 2 BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.KESARWANI,P.P.REDDY,M.SIRAJUDDIN,R.DAS REVDAT 4 15-MAY-24 7C1M 1 REMARK REVDAT 3 14-JUN-23 7C1M 1 REMARK REVDAT 2 14-OCT-20 7C1M 1 JRNL REVDAT 1 02-SEP-20 7C1M 0 JRNL AUTH S.KESARWANI,P.LAMA,A.CHANDRA,P.P.REDDY,A.S.JIJUMON, JRNL AUTH 2 S.BODAKUNTLA,B.M.RAO,C.JANKE,R.DAS,M.SIRAJUDDIN JRNL TITL GENETICALLY ENCODED LIVE-CELL SENSOR FOR TYROSINATED JRNL TITL 2 MICROTUBULES. JRNL REF J.CELL BIOL. V. 219 2020 JRNL REFN ESSN 1540-8140 JRNL PMID 32886100 JRNL DOI 10.1083/JCB.201912107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK REMARK 3 AUTHORS : BONVIN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016862. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM UNLABELED SODIUM REMARK 210 PHOSPHATE, 200 MM UNLABELED REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HN(CA)CO; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 2D REMARK 210 FILTERED NOESY; 2D FILTERED REMARK 210 TOCSY; 3D 13C-FILTERED, 13C- REMARK 210 EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PINE, SPARKY, CS REMARK 210 -ROSETTA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 VAL B 1 REMARK 465 GLU B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 63 HZ2 LYS A 66 1.56 REMARK 500 OD1 ASP A 19 HG SER A 21 1.59 REMARK 500 HZ2 LYS A 31 OE1 GLU A 51 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 12 19.79 55.35 REMARK 500 1 LEU A 39 -69.70 -97.71 REMARK 500 2 LYS A 10 58.66 -110.65 REMARK 500 2 LYS A 12 16.85 59.45 REMARK 500 2 GLU B 8 -131.37 -123.53 REMARK 500 3 LYS A 10 57.33 -102.69 REMARK 500 4 LYS A 10 57.88 -103.49 REMARK 500 4 LEU A 39 -62.09 -94.59 REMARK 500 5 MET A 4 -134.97 -90.08 REMARK 500 5 LYS A 12 15.70 59.16 REMARK 500 5 LEU A 39 -70.76 -96.17 REMARK 500 5 GLU B 8 -166.18 -118.28 REMARK 500 6 LYS A 12 12.51 58.96 REMARK 500 6 LEU A 24 -60.13 -93.74 REMARK 500 7 TYR A 11 98.97 -65.38 REMARK 500 8 TYR A 29 50.32 -98.76 REMARK 500 8 GLU B 8 -150.48 -129.93 REMARK 500 9 MET A 4 -168.56 -101.32 REMARK 500 9 TYR A 29 53.94 -96.85 REMARK 500 10 LYS A 12 18.72 59.24 REMARK 500 10 LEU A 24 -63.53 -91.60 REMARK 500 10 LEU A 39 -65.35 -102.57 REMARK 500 12 LYS A 10 60.56 -105.02 REMARK 500 12 LEU A 24 -63.41 -93.09 REMARK 500 13 LYS A 12 19.27 58.17 REMARK 500 13 LEU A 24 -61.31 -90.69 REMARK 500 14 ALA A 44 -165.94 -103.04 REMARK 500 15 LYS A 10 62.22 -100.92 REMARK 500 15 LYS A 12 19.19 56.37 REMARK 500 16 GLU B 8 -168.78 -122.82 REMARK 500 17 TYR A 29 54.24 -95.44 REMARK 500 18 ALA A 44 -158.65 -142.27 REMARK 500 19 GLU B 8 -168.76 -123.77 REMARK 500 20 LYS A 10 58.48 -105.62 REMARK 500 20 LEU A 24 -66.26 -93.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36353 RELATED DB: BMRB REMARK 900 COMPLEX STRUCTURE OF TYROSINATED ALPHA-TUBULIN CARBOXY-TERMINAL REMARK 900 PEPTIDE AND A1AY1 BINDER DBREF 7C1M A 1 67 PDB 7C1M 7C1M 1 67 DBREF 7C1M B 1 12 PDB 7C1M 7C1M 1 12 SEQRES 1 A 67 GLY SER HIS MET ALA THR VAL LYS PHE LYS TYR LYS GLY SEQRES 2 A 67 GLU GLU LYS GLN VAL ASP ILE SER LYS ILE LEU SER VAL SEQRES 3 A 67 GLY ARG TYR GLY LYS LEU ILE HIS PHE LEU TYR ASP LEU SEQRES 4 A 67 GLY GLY GLY LYS ALA GLY MET GLY MET VAL SER GLU LYS SEQRES 5 A 67 ASP ALA PRO LYS GLU LEU LEU GLN MET LEU GLU LYS GLN SEQRES 6 A 67 LYS LYS SEQRES 1 B 12 VAL GLU GLY GLU GLY GLU GLU GLU GLY GLU GLU TYR HELIX 1 AA1 PRO A 55 GLN A 65 1 11 SHEET 1 AA1 2 THR A 6 TYR A 11 0 SHEET 2 AA1 2 GLU A 14 ASP A 19 -1 O VAL A 18 N VAL A 7 SHEET 1 AA2 3 ILE A 23 ARG A 28 0 SHEET 2 AA2 3 LEU A 32 GLY A 40 -1 O HIS A 34 N GLY A 27 SHEET 3 AA2 3 LYS A 43 SER A 50 -1 O VAL A 49 N ILE A 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1