HEADER RNA 06-MAY-20 7C1Z TITLE ATP BOUND STRUCTURE OF PSEUDOURIDINE KINASE (PUKI) FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PFKB-LIKE CARBOHYDRATE KINASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G49350, F13F21.22, F13F21_22; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PSEUDOURIDINE, KINASE, PSEDOURIDINE KINASE, PUKI, RNA EXPDTA X-RAY DIFFRACTION AUTHOR S.H.KIM,S.RHEE REVDAT 3 27-MAR-24 7C1Z 1 REMARK REVDAT 2 02-JUN-21 7C1Z 1 JRNL REVDAT 1 18-NOV-20 7C1Z 0 JRNL AUTH S.H.KIM,C.P.WITTE,S.RHEE JRNL TITL STRUCTURAL BASIS FOR THE SUBSTRATE SPECIFICITY AND CATALYTIC JRNL TITL 2 FEATURES OF PSEUDOURIDINE KINASE FROM ARABIDOPSIS THALIANA. JRNL REF NUCLEIC ACIDS RES. V. 49 491 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33290549 JRNL DOI 10.1093/NAR/GKAA1144 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 39221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.097 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.7150 - 5.0451 0.96 2689 145 0.1878 0.2337 REMARK 3 2 5.0451 - 4.0073 0.99 2668 143 0.1564 0.2082 REMARK 3 3 4.0073 - 3.5015 1.00 2686 144 0.1683 0.2112 REMARK 3 4 3.5015 - 3.1818 1.00 2680 144 0.1779 0.2458 REMARK 3 5 3.1818 - 2.9539 1.00 2666 144 0.1785 0.2113 REMARK 3 6 2.9539 - 2.7799 1.00 2663 143 0.1806 0.2286 REMARK 3 7 2.7799 - 2.6407 1.00 2674 144 0.1861 0.2611 REMARK 3 8 2.6407 - 2.5258 1.00 2620 140 0.1901 0.2537 REMARK 3 9 2.5258 - 2.4286 1.00 2669 142 0.2048 0.2450 REMARK 3 10 2.4286 - 2.3449 1.00 2675 144 0.2242 0.3031 REMARK 3 11 2.3449 - 2.2716 1.00 2627 141 0.2367 0.2926 REMARK 3 12 2.2716 - 2.2067 1.00 2663 144 0.2321 0.3020 REMARK 3 13 2.2067 - 2.1486 1.00 2637 142 0.2543 0.2869 REMARK 3 14 2.1486 - 2.0962 0.99 2605 139 0.2630 0.3036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.243 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.428 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5442 REMARK 3 ANGLE : 1.254 7401 REMARK 3 CHIRALITY : 0.050 898 REMARK 3 PLANARITY : 0.006 925 REMARK 3 DIHEDRAL : 14.412 1987 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.5280 -6.5630 100.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.2588 T22: 0.2595 REMARK 3 T33: 0.3635 T12: 0.0275 REMARK 3 T13: -0.0355 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.4803 L22: 0.2976 REMARK 3 L33: 1.5945 L12: -0.1148 REMARK 3 L13: -0.6367 L23: 0.3934 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: -0.0280 S13: -0.0114 REMARK 3 S21: 0.0616 S22: 0.0363 S23: -0.0089 REMARK 3 S31: -0.0103 S32: -0.0025 S33: 0.0118 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND SEGID ' ' REMARK 3 SELECTION : CHAIN 'B' AND SEGID 'B000' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7C1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI SODIUM CITRATE, 22% PEG3350, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.95850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 204 REMARK 465 SER A 205 REMARK 465 ASP A 206 REMARK 465 GLU A 207 REMARK 465 ASN A 208 REMARK 465 LYS A 209 REMARK 465 ILE A 257 REMARK 465 ASP A 258 REMARK 465 ARG A 259 REMARK 465 LYS A 260 REMARK 465 PHE A 261 REMARK 465 LEU A 262 REMARK 465 ARG A 263 REMARK 465 SER A 264 REMARK 465 GLY A 265 REMARK 465 GLU A 266 REMARK 465 VAL A 267 REMARK 465 GLY A 284 REMARK 465 SER A 285 REMARK 465 ASN A 286 REMARK 465 ARG A 287 REMARK 465 LEU A 378 REMARK 465 ARG B 204 REMARK 465 SER B 205 REMARK 465 ASP B 206 REMARK 465 ARG B 259 REMARK 465 LYS B 260 REMARK 465 PHE B 261 REMARK 465 LEU B 262 REMARK 465 ARG B 263 REMARK 465 SER B 281 REMARK 465 GLU B 282 REMARK 465 LEU B 283 REMARK 465 GLY B 284 REMARK 465 SER B 285 REMARK 465 ASN B 286 REMARK 465 ARG B 287 REMARK 465 SER B 288 REMARK 465 PRO B 289 REMARK 465 VAL B 373 REMARK 465 HIS B 374 REMARK 465 GLN B 375 REMARK 465 SER B 376 REMARK 465 MET B 377 REMARK 465 LEU B 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 186 O HOH A 501 2.10 REMARK 500 NE ARG A 121 O HOH A 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 210 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 19 -158.36 -134.87 REMARK 500 SER A 23 137.61 -37.17 REMARK 500 LEU A 61 56.80 -105.40 REMARK 500 VAL A 162 -55.76 64.78 REMARK 500 LYS A 253 58.64 -111.24 REMARK 500 GLU A 282 24.21 -72.99 REMARK 500 SER A 376 -16.79 -157.76 REMARK 500 THR B 19 -138.05 -138.95 REMARK 500 SER B 23 135.30 -38.02 REMARK 500 LEU B 61 58.25 -105.48 REMARK 500 VAL B 162 -57.14 65.11 REMARK 500 LYS B 305 128.71 -171.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 181 O REMARK 620 2 THR A 237 OG1 104.3 REMARK 620 3 ATP A 404 O1B 149.2 89.0 REMARK 620 4 HOH A 510 O 71.8 127.5 78.1 REMARK 620 5 HOH A 535 O 80.0 125.0 115.1 106.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 305 O REMARK 620 2 ALA A 341 O 94.9 REMARK 620 3 SER A 344 O 90.4 91.7 REMARK 620 4 ASP A 346 O 154.7 110.3 86.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 404 O1B REMARK 620 2 HOH A 501 O 99.6 REMARK 620 3 HOH A 510 O 84.9 62.2 REMARK 620 4 HOH A 517 O 113.8 135.0 90.8 REMARK 620 5 HOH A 549 O 172.9 77.6 99.4 72.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 181 O REMARK 620 2 THR B 237 OG1 113.2 REMARK 620 3 ATP B 404 O1B 156.5 85.1 REMARK 620 4 HOH B 526 O 75.1 153.3 82.1 REMARK 620 5 HOH B 536 O 81.2 103.9 109.5 102.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 305 O REMARK 620 2 THR B 307 O 82.0 REMARK 620 3 THR B 307 OG1 77.4 71.6 REMARK 620 4 ALA B 341 O 82.4 96.1 157.5 REMARK 620 5 SER B 344 O 81.3 162.3 98.9 87.6 REMARK 620 6 ASP B 346 O 163.3 100.2 87.6 113.5 94.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 404 O1G REMARK 620 2 ATP B 404 O1B 75.9 REMARK 620 3 HOH B 517 O 90.8 106.2 REMARK 620 4 HOH B 526 O 165.8 96.0 80.1 REMARK 620 5 HOH B 533 O 83.5 94.3 156.8 109.1 REMARK 620 6 HOH B 543 O 91.6 165.6 66.3 94.7 91.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 404 DBREF 7C1Z A 1 378 UNP Q94AT3 Q94AT3_ARATH 1 378 DBREF 7C1Z B 1 378 UNP Q94AT3 Q94AT3_ARATH 1 378 SEQRES 1 A 378 MET GLU PRO VAL ILE ILE GLY ALA LEU ILE LEU ASP VAL SEQRES 2 A 378 HIS ALA LYS PRO SER THR THR PRO ILE SER GLY THR THR SEQRES 3 A 378 VAL PRO GLY GLN VAL LEU PHE ALA PRO GLY GLY VAL ALA SEQRES 4 A 378 ARG ASN VAL ALA ASP CYS ILE PHE LYS LEU GLY ILE THR SEQRES 5 A 378 PRO PHE MET ILE GLY THR LEU GLY LEU ASP GLY PRO ALA SEQRES 6 A 378 ASN VAL LEU LEU LYS GLU TRP LYS LEU SER MET LYS GLY SEQRES 7 A 378 ILE LEU ARG ARG GLU ASP ILE SER THR PRO ILE VAL SER SEQRES 8 A 378 LEU VAL TYR ASP THR ASN GLY GLU VAL ALA ALA GLY VAL SEQRES 9 A 378 ALA GLY VAL ASP ALA VAL GLU ASN PHE LEU THR PRO GLU SEQRES 10 A 378 TRP ILE GLN ARG PHE GLU TYR ASN ILE SER SER ALA ARG SEQRES 11 A 378 LEU LEU MET VAL ASP ALA ASN LEU SER SER LEU ALA LEU SEQRES 12 A 378 GLU ALA SER CYS LYS LEU ALA ALA GLU SER SER VAL PRO SEQRES 13 A 378 VAL TRP PHE GLU PRO VAL SER VAL THR LYS SER GLN ARG SEQRES 14 A 378 ILE ALA SER ILE ALA LYS TYR VAL THR ILE VAL SER PRO SEQRES 15 A 378 ASN GLN ASP GLU LEU ILE ALA MET ALA ASN ALA LEU CYS SEQRES 16 A 378 ALA LYS ASN LEU PHE HIS PRO PHE ARG SER ASP GLU ASN SEQRES 17 A 378 LYS LEU SER ILE GLU ASP MET PHE ARG ALA LEU LYS PRO SEQRES 18 A 378 ALA ILE LEU VAL LEU LEU LYS ASN GLY VAL LYS VAL VAL SEQRES 19 A 378 ILE VAL THR LEU GLY SER ASN GLY ALA LEU LEU CYS SER SEQRES 20 A 378 LYS GLY ASN PRO LYS LYS ALA LEU ASN ILE ASP ARG LYS SEQRES 21 A 378 PHE LEU ARG SER GLY GLU VAL PHE LYS ARG VAL GLN SER SEQRES 22 A 378 VAL CYS SER PRO ASN ARG PHE SER GLU LEU GLY SER ASN SEQRES 23 A 378 ARG SER PRO SER LEU PHE ALA MET HIS PHE PRO THR ILE SEQRES 24 A 378 PRO ALA LYS VAL LYS LYS LEU THR GLY ALA GLY ASP CYS SEQRES 25 A 378 LEU VAL GLY GLY THR VAL ALA SER LEU SER ASP GLY LEU SEQRES 26 A 378 ASP LEU ILE GLN SER LEU ALA VAL GLY ILE ALA SER ALA SEQRES 27 A 378 LYS ALA ALA VAL GLU SER ASP ASP ASN VAL PRO PRO GLU SEQRES 28 A 378 PHE LYS LEU ASP LEU ILE SER GLY ASP ALA GLU LEU VAL SEQRES 29 A 378 TYR ASN GLY ALA LYS MET LEU MET VAL HIS GLN SER MET SEQRES 30 A 378 LEU SEQRES 1 B 378 MET GLU PRO VAL ILE ILE GLY ALA LEU ILE LEU ASP VAL SEQRES 2 B 378 HIS ALA LYS PRO SER THR THR PRO ILE SER GLY THR THR SEQRES 3 B 378 VAL PRO GLY GLN VAL LEU PHE ALA PRO GLY GLY VAL ALA SEQRES 4 B 378 ARG ASN VAL ALA ASP CYS ILE PHE LYS LEU GLY ILE THR SEQRES 5 B 378 PRO PHE MET ILE GLY THR LEU GLY LEU ASP GLY PRO ALA SEQRES 6 B 378 ASN VAL LEU LEU LYS GLU TRP LYS LEU SER MET LYS GLY SEQRES 7 B 378 ILE LEU ARG ARG GLU ASP ILE SER THR PRO ILE VAL SER SEQRES 8 B 378 LEU VAL TYR ASP THR ASN GLY GLU VAL ALA ALA GLY VAL SEQRES 9 B 378 ALA GLY VAL ASP ALA VAL GLU ASN PHE LEU THR PRO GLU SEQRES 10 B 378 TRP ILE GLN ARG PHE GLU TYR ASN ILE SER SER ALA ARG SEQRES 11 B 378 LEU LEU MET VAL ASP ALA ASN LEU SER SER LEU ALA LEU SEQRES 12 B 378 GLU ALA SER CYS LYS LEU ALA ALA GLU SER SER VAL PRO SEQRES 13 B 378 VAL TRP PHE GLU PRO VAL SER VAL THR LYS SER GLN ARG SEQRES 14 B 378 ILE ALA SER ILE ALA LYS TYR VAL THR ILE VAL SER PRO SEQRES 15 B 378 ASN GLN ASP GLU LEU ILE ALA MET ALA ASN ALA LEU CYS SEQRES 16 B 378 ALA LYS ASN LEU PHE HIS PRO PHE ARG SER ASP GLU ASN SEQRES 17 B 378 LYS LEU SER ILE GLU ASP MET PHE ARG ALA LEU LYS PRO SEQRES 18 B 378 ALA ILE LEU VAL LEU LEU LYS ASN GLY VAL LYS VAL VAL SEQRES 19 B 378 ILE VAL THR LEU GLY SER ASN GLY ALA LEU LEU CYS SER SEQRES 20 B 378 LYS GLY ASN PRO LYS LYS ALA LEU ASN ILE ASP ARG LYS SEQRES 21 B 378 PHE LEU ARG SER GLY GLU VAL PHE LYS ARG VAL GLN SER SEQRES 22 B 378 VAL CYS SER PRO ASN ARG PHE SER GLU LEU GLY SER ASN SEQRES 23 B 378 ARG SER PRO SER LEU PHE ALA MET HIS PHE PRO THR ILE SEQRES 24 B 378 PRO ALA LYS VAL LYS LYS LEU THR GLY ALA GLY ASP CYS SEQRES 25 B 378 LEU VAL GLY GLY THR VAL ALA SER LEU SER ASP GLY LEU SEQRES 26 B 378 ASP LEU ILE GLN SER LEU ALA VAL GLY ILE ALA SER ALA SEQRES 27 B 378 LYS ALA ALA VAL GLU SER ASP ASP ASN VAL PRO PRO GLU SEQRES 28 B 378 PHE LYS LEU ASP LEU ILE SER GLY ASP ALA GLU LEU VAL SEQRES 29 B 378 TYR ASN GLY ALA LYS MET LEU MET VAL HIS GLN SER MET SEQRES 30 B 378 LEU HET NA A 401 1 HET MG A 402 1 HET MG A 403 1 HET ATP A 404 31 HET NA B 401 1 HET MG B 402 1 HET MG B 403 1 HET ATP B 404 31 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 NA 2(NA 1+) FORMUL 4 MG 4(MG 2+) FORMUL 6 ATP 2(C10 H16 N5 O13 P3) FORMUL 11 HOH *109(H2 O) HELIX 1 AA1 GLY A 37 LEU A 49 1 13 HELIX 2 AA2 ASP A 62 LYS A 70 1 9 HELIX 3 AA3 VAL A 107 LEU A 114 1 8 HELIX 4 AA4 THR A 115 ARG A 121 1 7 HELIX 5 AA5 PHE A 122 SER A 128 1 7 HELIX 6 AA6 SER A 139 SER A 153 1 15 HELIX 7 AA7 SER A 163 GLN A 168 1 6 HELIX 8 AA8 ARG A 169 VAL A 177 5 9 HELIX 9 AA9 ASN A 183 ALA A 196 1 14 HELIX 10 AB1 SER A 211 ASN A 229 1 19 HELIX 11 AB2 GLY A 239 ASN A 241 5 3 HELIX 12 AB3 LYS A 269 CYS A 275 1 7 HELIX 13 AB4 GLY A 308 ASP A 323 1 16 HELIX 14 AB5 ASP A 326 GLU A 343 1 18 HELIX 15 AB6 LYS A 353 GLY A 367 1 15 HELIX 16 AB7 GLY B 37 LEU B 49 1 13 HELIX 17 AB8 ASP B 62 LYS B 70 1 9 HELIX 18 AB9 ASP B 108 LEU B 114 1 7 HELIX 19 AC1 THR B 115 ARG B 121 1 7 HELIX 20 AC2 PHE B 122 SER B 128 1 7 HELIX 21 AC3 SER B 139 GLU B 152 1 14 HELIX 22 AC4 THR B 165 VAL B 177 5 13 HELIX 23 AC5 ASN B 183 CYS B 195 1 13 HELIX 24 AC6 SER B 211 ASN B 229 1 19 HELIX 25 AC7 GLY B 239 ASN B 241 5 3 HELIX 26 AC8 GLY B 265 CYS B 275 1 11 HELIX 27 AC9 GLY B 308 ASP B 323 1 16 HELIX 28 AD1 ASP B 326 GLU B 343 1 18 HELIX 29 AD2 LYS B 353 ALA B 368 1 16 SHEET 1 AA110 ILE A 79 ARG A 81 0 SHEET 2 AA110 PHE A 54 LEU A 59 1 N GLY A 57 O LEU A 80 SHEET 3 AA110 VAL A 4 ILE A 6 1 N ILE A 5 O ILE A 56 SHEET 4 AA110 LEU A 132 ASP A 135 1 O MET A 133 N ILE A 6 SHEET 5 AA110 VAL A 157 GLU A 160 1 O TRP A 158 N LEU A 132 SHEET 6 AA110 ILE A 179 VAL A 180 1 O ILE A 179 N PHE A 159 SHEET 7 AA110 VAL A 233 THR A 237 1 O ILE A 235 N VAL A 180 SHEET 8 AA110 ALA A 243 SER A 247 -1 O CYS A 246 N VAL A 234 SHEET 9 AA110 PHE A 292 PHE A 296 -1 O MET A 294 N LEU A 245 SHEET 10 AA110 LYS A 369 MET A 370 -1 O LYS A 369 N HIS A 295 SHEET 1 AA2 9 ILE A 10 PRO A 17 0 SHEET 2 AA2 9 THR A 26 GLY A 36 -1 O GLN A 30 N LYS A 16 SHEET 3 AA2 9 VAL B 100 GLY B 106 1 O ALA B 105 N VAL A 27 SHEET 4 AA2 9 ILE B 89 TYR B 94 -1 N SER B 91 O VAL B 104 SHEET 5 AA2 9 ILE B 10 PRO B 17 1 N ALA B 15 O TYR B 94 SHEET 6 AA2 9 VAL B 27 GLY B 36 -1 O LEU B 32 N HIS B 14 SHEET 7 AA2 9 VAL A 100 GLY A 106 1 N ALA A 105 O VAL B 27 SHEET 8 AA2 9 ILE A 89 TYR A 94 -1 N VAL A 93 O ALA A 102 SHEET 9 AA2 9 ILE A 10 PRO A 17 1 N VAL A 13 O LEU A 92 SHEET 1 AA310 ILE B 79 ARG B 82 0 SHEET 2 AA310 PHE B 54 GLY B 60 1 N GLY B 57 O LEU B 80 SHEET 3 AA310 VAL B 4 ILE B 6 1 N ILE B 5 O PHE B 54 SHEET 4 AA310 LEU B 132 ASP B 135 1 O MET B 133 N VAL B 4 SHEET 5 AA310 VAL B 157 GLU B 160 1 O TRP B 158 N LEU B 132 SHEET 6 AA310 ILE B 179 VAL B 180 1 O ILE B 179 N PHE B 159 SHEET 7 AA310 VAL B 233 THR B 237 1 O ILE B 235 N VAL B 180 SHEET 8 AA310 ALA B 243 LYS B 248 -1 O CYS B 246 N VAL B 234 SHEET 9 AA310 LEU B 291 PHE B 296 -1 O MET B 294 N LEU B 245 SHEET 10 AA310 LYS B 369 MET B 372 -1 O LEU B 371 N ALA B 293 LINK O SER A 181 MG MG A 402 1555 1555 2.85 LINK OG1 THR A 237 MG MG A 402 1555 1555 2.93 LINK O LYS A 305 NA NA A 401 1555 1555 2.80 LINK O ALA A 341 NA NA A 401 1555 1555 2.24 LINK O SER A 344 NA NA A 401 1555 1555 2.58 LINK O ASP A 346 NA NA A 401 1555 1555 2.49 LINK MG MG A 402 O1B ATP A 404 1555 1555 2.70 LINK MG MG A 402 O HOH A 510 1555 1555 2.75 LINK MG MG A 402 O HOH A 535 1555 1555 2.45 LINK MG MG A 403 O1B ATP A 404 1555 1555 2.30 LINK MG MG A 403 O HOH A 501 1555 1555 2.82 LINK MG MG A 403 O HOH A 510 1555 1555 2.76 LINK MG MG A 403 O HOH A 517 1555 1555 2.25 LINK MG MG A 403 O HOH A 549 1555 1555 2.34 LINK O SER B 181 MG MG B 402 1555 1555 2.64 LINK OG1 THR B 237 MG MG B 402 1555 1555 2.97 LINK O LYS B 305 NA NA B 401 1555 1555 3.18 LINK O THR B 307 NA NA B 401 1555 1555 2.50 LINK OG1 THR B 307 NA NA B 401 1555 1555 2.68 LINK O ALA B 341 NA NA B 401 1555 1555 2.32 LINK O SER B 344 NA NA B 401 1555 1555 2.54 LINK O ASP B 346 NA NA B 401 1555 1555 2.37 LINK MG MG B 402 O1B ATP B 404 1555 1555 2.98 LINK MG MG B 402 O HOH B 526 1555 1555 2.53 LINK MG MG B 402 O HOH B 536 1555 1555 2.64 LINK MG MG B 403 O1G ATP B 404 1555 1555 2.40 LINK MG MG B 403 O1B ATP B 404 1555 1555 2.23 LINK MG MG B 403 O HOH B 517 1555 1555 2.70 LINK MG MG B 403 O HOH B 526 1555 1555 2.64 LINK MG MG B 403 O HOH B 533 1555 1555 2.02 LINK MG MG B 403 O HOH B 543 1555 1555 2.38 SITE 1 AC1 5 LYS A 305 THR A 307 ALA A 341 SER A 344 SITE 2 AC1 5 ASP A 346 SITE 1 AC2 6 SER A 181 THR A 237 MG A 403 ATP A 404 SITE 2 AC2 6 HOH A 510 HOH A 535 SITE 1 AC3 7 GLU A 160 MG A 402 ATP A 404 HOH A 501 SITE 2 AC3 7 HOH A 510 HOH A 517 HOH A 549 SITE 1 AC4 15 ASN A 183 THR A 237 GLY A 239 GLY A 242 SITE 2 AC4 15 THR A 298 ILE A 299 LEU A 306 GLY A 308 SITE 3 AC4 15 ALA A 309 GLY A 310 LEU A 313 ILE A 335 SITE 4 AC4 15 ALA A 338 MG A 402 MG A 403 SITE 1 AC5 5 LYS B 305 THR B 307 ALA B 341 SER B 344 SITE 2 AC5 5 ASP B 346 SITE 1 AC6 9 GLU B 160 SER B 181 PRO B 182 ASN B 183 SITE 2 AC6 9 THR B 237 MG B 403 ATP B 404 HOH B 526 SITE 3 AC6 9 HOH B 536 SITE 1 AC7 6 MG B 402 ATP B 404 HOH B 517 HOH B 526 SITE 2 AC7 6 HOH B 533 HOH B 543 SITE 1 AC8 15 ASN B 183 THR B 237 LEU B 238 GLY B 239 SITE 2 AC8 15 GLY B 242 THR B 298 ILE B 299 VAL B 303 SITE 3 AC8 15 ALA B 309 GLY B 310 LEU B 313 ALA B 338 SITE 4 AC8 15 MG B 402 MG B 403 HOH B 533 CRYST1 80.613 47.917 91.928 90.00 108.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012405 0.000000 0.004259 0.00000 SCALE2 0.000000 0.020869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011501 0.00000