HEADER VIRAL PROTEIN 22-MAY-20 7C6U
TITLE CRYSTAL STRUCTURE OF SARS-COV-2 COMPLEXED WITH GC376
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 3C-LIKE PROTEINASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5,
COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE;
COMPND 6 EC: 3.4.22.69;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS
SOURCE 3 2;
SOURCE 4 ORGANISM_COMMON: 2019-NCOV;
SOURCE 5 ORGANISM_TAXID: 2697049;
SOURCE 6 GENE: REP, 1A-1B;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333;
SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K-12
KEYWDS SARS-COV-2, MAIN PROTEASE, INHIBITOR, VIRAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR L.FU,Y.FENG,J.QI,F.G.GAO
REVDAT 5 06-NOV-24 7C6U 1 REMARK
REVDAT 4 29-NOV-23 7C6U 1 REMARK
REVDAT 3 10-MAR-21 7C6U 1 COMPND
REVDAT 2 25-NOV-20 7C6U 1 JRNL
REVDAT 1 02-SEP-20 7C6U 0
JRNL AUTH L.FU,F.YE,Y.FENG,F.YU,Q.WANG,Y.WU,C.ZHAO,H.SUN,B.HUANG,
JRNL AUTH 2 P.NIU,H.SONG,Y.SHI,X.LI,W.TAN,J.QI,G.F.GAO
JRNL TITL BOTH BOCEPREVIR AND GC376 EFFICACIOUSLY INHIBIT SARS-COV-2
JRNL TITL 2 BY TARGETING ITS MAIN PROTEASE.
JRNL REF NAT COMMUN V. 11 4417 2020
JRNL REFN ESSN 2041-1723
JRNL PMID 32887884
JRNL DOI 10.1038/S41467-020-18233-X
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.16_3549
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.26
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3
REMARK 3 NUMBER OF REFLECTIONS : 24895
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.242
REMARK 3 R VALUE (WORKING SET) : 0.242
REMARK 3 FREE R VALUE : 0.251
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830
REMARK 3 FREE R VALUE TEST SET COUNT : 1203
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 43.2600 - 4.1500 0.99 2705 130 0.1798 0.1633
REMARK 3 2 4.1500 - 3.3000 0.99 2647 132 0.2076 0.2166
REMARK 3 3 3.3000 - 2.8800 1.00 2620 150 0.2534 0.2608
REMARK 3 4 2.8800 - 2.6200 1.00 2640 144 0.2764 0.2789
REMARK 3 5 2.6200 - 2.4300 1.00 2638 134 0.2888 0.3063
REMARK 3 6 2.4300 - 2.2900 1.00 2646 141 0.2834 0.3041
REMARK 3 7 2.2900 - 2.1700 1.00 2638 130 0.2847 0.3135
REMARK 3 8 2.1700 - 2.0800 1.00 2658 118 0.2911 0.3370
REMARK 3 9 2.0800 - 2.0000 0.96 2500 124 0.2979 0.3195
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.263
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.479
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 21.01
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.96
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.002 2413
REMARK 3 ANGLE : 0.502 3282
REMARK 3 CHIRALITY : 0.040 371
REMARK 3 PLANARITY : 0.004 426
REMARK 3 DIHEDRAL : 21.164 877
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 )
REMARK 3 ORIGIN FOR THE GROUP (A): -13.1364 -15.3108 11.1928
REMARK 3 T TENSOR
REMARK 3 T11: 0.2732 T22: 0.1223
REMARK 3 T33: 0.0998 T12: 0.1002
REMARK 3 T13: 0.0099 T23: 0.0316
REMARK 3 L TENSOR
REMARK 3 L11: 0.0011 L22: 0.0320
REMARK 3 L33: 0.0067 L12: 0.0018
REMARK 3 L13: -0.0002 L23: -0.0145
REMARK 3 S TENSOR
REMARK 3 S11: 0.0569 S12: 0.0341 S13: 0.0048
REMARK 3 S21: 0.0000 S22: -0.0102 S23: -0.0002
REMARK 3 S31: -0.0930 S32: -0.0470 S33: 0.0441
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 110 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.1682 -11.4845 0.7394
REMARK 3 T TENSOR
REMARK 3 T11: 0.2652 T22: 0.1553
REMARK 3 T33: 0.1041 T12: 0.1365
REMARK 3 T13: 0.0289 T23: 0.0600
REMARK 3 L TENSOR
REMARK 3 L11: -0.0003 L22: 0.0380
REMARK 3 L33: 0.0070 L12: -0.0029
REMARK 3 L13: 0.0016 L23: -0.0199
REMARK 3 S TENSOR
REMARK 3 S11: 0.0439 S12: 0.0173 S13: 0.0093
REMARK 3 S21: -0.0365 S22: -0.0109 S23: 0.0133
REMARK 3 S31: -0.1282 S32: -0.0751 S33: 0.0344
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 180 )
REMARK 3 ORIGIN FOR THE GROUP (A): -10.4613 -23.7366 10.6298
REMARK 3 T TENSOR
REMARK 3 T11: 0.0442 T22: 0.0383
REMARK 3 T33: 0.0882 T12: 0.0319
REMARK 3 T13: -0.0207 T23: 0.0273
REMARK 3 L TENSOR
REMARK 3 L11: 0.0308 L22: 0.0107
REMARK 3 L33: 0.1839 L12: -0.0165
REMARK 3 L13: 0.0339 L23: -0.0353
REMARK 3 S TENSOR
REMARK 3 S11: -0.0092 S12: -0.0065 S13: 0.0077
REMARK 3 S21: 0.0001 S22: 0.0057 S23: 0.0129
REMARK 3 S31: -0.0601 S32: -0.0481 S33: 0.0254
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 213 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.6176 -35.1573 9.1029
REMARK 3 T TENSOR
REMARK 3 T11: 0.0930 T22: 0.1668
REMARK 3 T33: 0.0884 T12: 0.1144
REMARK 3 T13: 0.0022 T23: 0.0430
REMARK 3 L TENSOR
REMARK 3 L11: 0.0222 L22: 0.0776
REMARK 3 L33: 0.0031 L12: 0.0398
REMARK 3 L13: 0.0061 L23: 0.0143
REMARK 3 S TENSOR
REMARK 3 S11: -0.0529 S12: -0.0674 S13: 0.0076
REMARK 3 S21: 0.0214 S22: 0.0020 S23: 0.0306
REMARK 3 S31: 0.0334 S32: 0.0284 S33: -0.0498
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 250 )
REMARK 3 ORIGIN FOR THE GROUP (A): 7.9280 -45.4678 17.4718
REMARK 3 T TENSOR
REMARK 3 T11: 0.3015 T22: 0.3246
REMARK 3 T33: 0.1877 T12: 0.2190
REMARK 3 T13: 0.0397 T23: 0.0764
REMARK 3 L TENSOR
REMARK 3 L11: 0.0040 L22: 0.0004
REMARK 3 L33: 0.0048 L12: 0.0001
REMARK 3 L13: 0.0037 L23: 0.0009
REMARK 3 S TENSOR
REMARK 3 S11: 0.0017 S12: 0.0059 S13: -0.0080
REMARK 3 S21: -0.0025 S22: 0.0033 S23: 0.0029
REMARK 3 S31: 0.0158 S32: 0.0175 S33: 0.0126
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 301 )
REMARK 3 ORIGIN FOR THE GROUP (A): 3.0188 -41.2364 23.6283
REMARK 3 T TENSOR
REMARK 3 T11: 0.1526 T22: 0.2418
REMARK 3 T33: 0.1415 T12: 0.1380
REMARK 3 T13: 0.0248 T23: 0.0829
REMARK 3 L TENSOR
REMARK 3 L11: 0.0395 L22: 0.0087
REMARK 3 L33: 0.0345 L12: -0.0111
REMARK 3 L13: 0.0335 L23: -0.0159
REMARK 3 S TENSOR
REMARK 3 S11: -0.0287 S12: -0.0144 S13: 0.0100
REMARK 3 S21: -0.0060 S22: -0.0219 S23: -0.0284
REMARK 3 S31: 0.0410 S32: 0.0647 S33: -0.0858
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7C6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-20.
REMARK 100 THE DEPOSITION ID IS D_1300017108.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 18-MAY-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL19U1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24996
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 7.500
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 7BRR
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.62
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE PH 6.0, 14% W/V
REMARK 280 POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.00150
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.80350
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.00150
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.80350
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 25000 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -21.67587
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.10290
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 650 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 302
REMARK 465 VAL A 303
REMARK 465 THR A 304
REMARK 465 PHE A 305
REMARK 465 GLN A 306
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 33 -108.80 51.81
REMARK 500 ASN A 84 -103.74 58.99
REMARK 500 TYR A 154 -99.16 -138.14
REMARK 500 HIS A 164 -38.59 -134.76
REMARK 500 CYS A 300 31.66 -92.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 630
REMARK 630 MOLECULE TYPE: NULL
REMARK 630 MOLECULE NAME: (1S,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)-
REMARK 630 1-HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1-SULFONIC ACID
REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 630
REMARK 630 M RES C SSSEQI
REMARK 630 K36 A 401
REMARK 630 SOURCE: NULL
REMARK 630 TAXONOMY: NULL
REMARK 630 SUBCOMP: PHQ LEU 04F
REMARK 630 DETAILS: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue K36 A 401
DBREF 7C6U A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569
SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL
SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR
SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO
SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO
SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN
SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE
SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL
SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL
SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS
SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET
SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY
SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS
SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR
SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR
SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY
SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU
SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN
SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA
SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL
SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA
SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN
SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU
SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN
SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN
HET K36 A 401 29
HETNAM K36 (1S,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)-1-
HETNAM 2 K36 HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1-
HETNAM 3 K36 SULFONIC ACID
HETSYN K36 GC376
FORMUL 2 K36 C21 H31 N3 O8 S
FORMUL 3 HOH *160(H2 O)
HELIX 1 AA1 SER A 10 GLY A 15 1 6
HELIX 2 AA2 HIS A 41 CYS A 44 5 4
HELIX 3 AA3 GLU A 47 ASN A 51 5 5
HELIX 4 AA4 ASN A 53 ARG A 60 1 8
HELIX 5 AA5 SER A 62 HIS A 64 5 3
HELIX 6 AA6 ILE A 200 ASN A 214 1 15
HELIX 7 AA7 THR A 226 TYR A 237 1 12
HELIX 8 AA8 THR A 243 LEU A 250 1 8
HELIX 9 AA9 LEU A 250 GLY A 258 1 9
HELIX 10 AB1 ALA A 260 GLY A 275 1 16
HELIX 11 AB2 THR A 292 CYS A 300 1 9
SHEET 1 AA1 7 VAL A 73 LEU A 75 0
SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73
SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67
SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20
SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30
SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38
SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88
SHEET 1 AA2 5 TYR A 101 PHE A 103 0
SHEET 2 AA2 5 VAL A 157 GLU A 166 1 O VAL A 157 N LYS A 102
SHEET 3 AA2 5 VAL A 148 ILE A 152 -1 N ASN A 151 O SER A 158
SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150
SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116
SHEET 1 AA3 3 TYR A 101 PHE A 103 0
SHEET 2 AA3 3 VAL A 157 GLU A 166 1 O VAL A 157 N LYS A 102
SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165
LINK SG CYS A 145 C21 K36 A 401 1555 1555 1.77
SITE 1 AC1 12 PHE A 140 LEU A 141 GLY A 143 SER A 144
SITE 2 AC1 12 CYS A 145 HIS A 163 HIS A 164 MET A 165
SITE 3 AC1 12 GLU A 166 HIS A 172 GLN A 189 HOH A 582
CRYST1 100.003 79.607 51.851 90.00 114.71 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010000 0.000000 0.004602 0.00000
SCALE2 0.000000 0.012562 0.000000 0.00000
SCALE3 0.000000 0.000000 0.021230 0.00000