HEADER SUGAR BINDING PROTEIN 22-MAY-20 7C70 TITLE CRYSTAL STRUCTURE OF BETA-GLYCOSIDES-BINDING PROTEIN (W67A) OF ABC TITLE 2 TRANSPORTER IN AN OPEN-LIGANDED STATE BOUND TO GENTIOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER, PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 ATCC: 27634; SOURCE 6 GENE: TTHB082; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CONFORMATIONAL DYNAMICS, SUBSTRATE-BINDING PROTEIN, INDUCED-FIT KEYWDS 2 MECHANISM, TWO-STEP LIGAND BINDING, VENUS FLY-TRAP MECHANISM, SUGAR KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,R.SAMANTA REVDAT 3 29-NOV-23 7C70 1 REMARK REVDAT 2 14-OCT-20 7C70 1 JRNL REVDAT 1 16-SEP-20 7C70 0 JRNL AUTH M.CHANDRAVANSHI,R.SAMANTA,S.P.KANAUJIA JRNL TITL CONFORMATIONAL TRAPPING OF A BETA-GLUCOSIDES-BINDING PROTEIN JRNL TITL 2 UNVEILS THE SELECTIVE TWO-STEP LIGAND-BINDING MECHANISM OF JRNL TITL 3 ABC IMPORTERS. JRNL REF J.MOL.BIOL. V. 432 5711 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32866452 JRNL DOI 10.1016/J.JMB.2020.08.021 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 81727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5905 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 313 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 125 REMARK 3 SOLVENT ATOMS : 832 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6804 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6331 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9277 ; 1.993 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14699 ; 1.594 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 882 ; 6.139 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 326 ;33.985 ;21.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1060 ;14.276 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;17.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 869 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7660 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1473 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 415 B 2 415 13309 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6535 -13.8851 17.8703 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: 0.0025 REMARK 3 T33: 0.0098 T12: 0.0025 REMARK 3 T13: 0.0035 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1549 L22: 0.1301 REMARK 3 L33: 0.0913 L12: -0.1088 REMARK 3 L13: 0.0312 L23: -0.0369 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0165 S13: -0.0084 REMARK 3 S21: 0.0181 S22: -0.0059 S23: 0.0076 REMARK 3 S31: -0.0102 S32: 0.0027 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 416 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2623 -15.9068 -12.4415 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: 0.0162 REMARK 3 T33: 0.0185 T12: 0.0027 REMARK 3 T13: 0.0002 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.2281 L22: 0.0906 REMARK 3 L33: 0.0594 L12: -0.0111 REMARK 3 L13: 0.1034 L23: 0.0126 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0119 S13: 0.0032 REMARK 3 S21: 0.0006 S22: -0.0033 S23: -0.0041 REMARK 3 S31: 0.0083 S32: 0.0041 S33: -0.0128 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7C70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300017111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 49.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7C63 REMARK 200 REMARK 200 REMARK: MONOCLINIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 55% PEG 8000, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.48000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 MET B 0 REMARK 465 GLN B 1 REMARK 465 HIS B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 365 O HOH A 601 1.69 REMARK 500 O HOH A 639 O HOH A 973 1.79 REMARK 500 OE2 GLU A 17 O HOH A 602 1.81 REMARK 500 OE2 GLU A 17 O HOH A 603 1.82 REMARK 500 O HOH A 743 O HOH A 839 1.83 REMARK 500 NE2 GLN A 358 O HOH A 604 1.86 REMARK 500 O HOH A 908 O HOH A 935 1.94 REMARK 500 O HOH A 901 O HOH A 987 1.98 REMARK 500 OE2 GLU B 193 O HOH B 601 1.98 REMARK 500 O HOH B 671 O HOH B 843 2.01 REMARK 500 NH1 ARG B 196 O HOH B 602 2.04 REMARK 500 O HOH A 805 O HOH A 996 2.05 REMARK 500 O HOH A 684 O HOH A 916 2.06 REMARK 500 O HOH B 690 O HOH B 882 2.09 REMARK 500 O HOH A 786 O HOH A 790 2.09 REMARK 500 O HOH B 615 O HOH B 981 2.09 REMARK 500 O HOH B 752 O HOH B 970 2.09 REMARK 500 O HOH B 874 O HOH B 948 2.11 REMARK 500 C3 PGO A 504 O HOH A 912 2.12 REMARK 500 O GLU B 265 O HOH B 603 2.13 REMARK 500 O HOH B 812 O HOH B 900 2.14 REMARK 500 O HOH A 676 O HOH A 965 2.18 REMARK 500 NE ARG B 394 O HOH B 604 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 104 CD GLU A 104 OE1 0.100 REMARK 500 GLU A 398 CD GLU A 398 OE1 0.081 REMARK 500 GLU B 104 CD GLU B 104 OE1 0.128 REMARK 500 GLU B 193 CD GLU B 193 OE2 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 260 NE - CZ - NH1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 260 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 327 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 339 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 158 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLU B 193 CG - CD - OE2 ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG B 260 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 260 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 291 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 291 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 327 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG B 327 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 175 59.29 -100.78 REMARK 500 PHE A 270 27.82 -145.21 REMARK 500 ASN A 278 52.05 -141.05 REMARK 500 ASN B 175 59.99 -97.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 222 -11.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 7C70 A 1 416 UNP Q53W80 Q53W80_THET8 19 434 DBREF 7C70 B 1 416 UNP Q53W80 Q53W80_THET8 19 434 SEQADV 7C70 MET A 0 UNP Q53W80 INITIATING METHIONINE SEQADV 7C70 ALA A 67 UNP Q53W80 TRP 85 ENGINEERED MUTATION SEQADV 7C70 HIS A 417 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS A 418 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS A 419 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS A 420 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS A 421 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS A 422 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 MET B 0 UNP Q53W80 INITIATING METHIONINE SEQADV 7C70 ALA B 67 UNP Q53W80 TRP 85 ENGINEERED MUTATION SEQADV 7C70 HIS B 417 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS B 418 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS B 419 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS B 420 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS B 421 UNP Q53W80 EXPRESSION TAG SEQADV 7C70 HIS B 422 UNP Q53W80 EXPRESSION TAG SEQRES 1 A 423 MET GLN LYS THR LEU GLU VAL TRP ILE MET PRO ASN SER SEQRES 2 A 423 PRO GLN PRO ALA GLU ASP PHE LYS ALA LEU VAL ALA PRO SEQRES 3 A 423 PHE GLU LYS ALA HIS GLY VAL GLU VAL LYS VAL THR VAL SEQRES 4 A 423 LEU ASP TRP GLY VAL ALA TRP THR LYS ILE THR THR ALA SEQRES 5 A 423 ALA THR SER GLY VAL GLY PRO ASP LEU THR GLN LEU GLY SEQRES 6 A 423 THR THR ALA VAL GLY ALA ILE SER ALA MET GLY VAL LEU SEQRES 7 A 423 GLU PRO VAL ASP ASP VAL LEU GLU ALA LEU GLY GLY GLU SEQRES 8 A 423 LYS ALA TYR LEU PRO ALA VAL TRP ARG THR THR ARG LEU SEQRES 9 A 423 GLU GLY ALA ARG GLN ALA THR ALA VAL PRO TRP PHE SER SEQRES 10 A 423 GLU LEU ARG ALA PHE TYR TYR ARG THR ASP ALA LEU LYS SEQRES 11 A 423 ALA ALA GLY VAL ASN PRO ALA GLU MET PHE ALA SER TRP SEQRES 12 A 423 GLN GLY PHE GLU ALA GLY LEU ALA ARG LEU LYS ALA SER SEQRES 13 A 423 SER PHE ARG ASP PRO GLU THR LYS ALA PRO LEU ALA PRO SEQRES 14 A 423 LEU CYS THR PRO GLY LYS ASN SER TRP ASP VAL LEU HIS SEQRES 15 A 423 ASN ALA ALA PRO TRP ILE TRP GLY ALA GLY GLY GLU ILE SEQRES 16 A 423 VAL ARG GLN ALA GLY GLY ARG TRP GLN SER ALA LEU ASN SEQRES 17 A 423 SER PRO GLU SER LEU GLU GLY LEU TYR PHE PHE LEU SER SEQRES 18 A 423 LEU ALA GLN LYS GLY TYR VAL PRO ALA GLU SER LEU GLU SEQRES 19 A 423 LYS ASN THR ALA GLN ILE GLU ALA ASP PHE GLN ALA GLY SEQRES 20 A 423 LYS CYS ALA VAL PHE ALA SER GLY PRO TRP MET ILE GLN SEQRES 21 A 423 ARG ALA GLN VAL PRO GLU ALA LYS GLY GLY PHE ALA GLU SEQRES 22 A 423 ARG THR ALA ALA LYS ASN LEU GLY VAL ALA PRO TYR PRO SEQRES 23 A 423 ALA GLY PRO LYS GLY ARG TYR THR PHE PHE GLY GLY SER SEQRES 24 A 423 ASN LEU ALA LEU PHE ASN PHE SER LYS ASN LYS PRO LEU SEQRES 25 A 423 ALA LYS GLU LEU LEU LYS TYR LEU GLY GLY PRO GLU ALA SEQRES 26 A 423 GLN VAL ARG TYR ALA GLN MET THR GLY MET LEU PRO ALA SEQRES 27 A 423 LEU ARG SER ALA TRP SER ASP PRO SER PHE GLN GLN ASN SEQRES 28 A 423 PRO LEU LEU ARG THR PHE ILE GLN ALA ALA GLN PHE GLY SEQRES 29 A 423 ARG THR TYR PRO SER LEU ALA GLY TRP GLY GLY VAL GLU SEQRES 30 A 423 ASN LEU ALA VAL GLN HIS LEU GLY MET ALA TRP ASP LEU SEQRES 31 A 423 VAL ALA GLN GLY ARG LEU THR ARG GLU ALA LEU LYS ASP SEQRES 32 A 423 LEU MET ASP LYS ALA SER ALA ALA ILE ASN GLN ALA LEU SEQRES 33 A 423 ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 423 MET GLN LYS THR LEU GLU VAL TRP ILE MET PRO ASN SER SEQRES 2 B 423 PRO GLN PRO ALA GLU ASP PHE LYS ALA LEU VAL ALA PRO SEQRES 3 B 423 PHE GLU LYS ALA HIS GLY VAL GLU VAL LYS VAL THR VAL SEQRES 4 B 423 LEU ASP TRP GLY VAL ALA TRP THR LYS ILE THR THR ALA SEQRES 5 B 423 ALA THR SER GLY VAL GLY PRO ASP LEU THR GLN LEU GLY SEQRES 6 B 423 THR THR ALA VAL GLY ALA ILE SER ALA MET GLY VAL LEU SEQRES 7 B 423 GLU PRO VAL ASP ASP VAL LEU GLU ALA LEU GLY GLY GLU SEQRES 8 B 423 LYS ALA TYR LEU PRO ALA VAL TRP ARG THR THR ARG LEU SEQRES 9 B 423 GLU GLY ALA ARG GLN ALA THR ALA VAL PRO TRP PHE SER SEQRES 10 B 423 GLU LEU ARG ALA PHE TYR TYR ARG THR ASP ALA LEU LYS SEQRES 11 B 423 ALA ALA GLY VAL ASN PRO ALA GLU MET PHE ALA SER TRP SEQRES 12 B 423 GLN GLY PHE GLU ALA GLY LEU ALA ARG LEU LYS ALA SER SEQRES 13 B 423 SER PHE ARG ASP PRO GLU THR LYS ALA PRO LEU ALA PRO SEQRES 14 B 423 LEU CYS THR PRO GLY LYS ASN SER TRP ASP VAL LEU HIS SEQRES 15 B 423 ASN ALA ALA PRO TRP ILE TRP GLY ALA GLY GLY GLU ILE SEQRES 16 B 423 VAL ARG GLN ALA GLY GLY ARG TRP GLN SER ALA LEU ASN SEQRES 17 B 423 SER PRO GLU SER LEU GLU GLY LEU TYR PHE PHE LEU SER SEQRES 18 B 423 LEU ALA GLN LYS GLY TYR VAL PRO ALA GLU SER LEU GLU SEQRES 19 B 423 LYS ASN THR ALA GLN ILE GLU ALA ASP PHE GLN ALA GLY SEQRES 20 B 423 LYS CYS ALA VAL PHE ALA SER GLY PRO TRP MET ILE GLN SEQRES 21 B 423 ARG ALA GLN VAL PRO GLU ALA LYS GLY GLY PHE ALA GLU SEQRES 22 B 423 ARG THR ALA ALA LYS ASN LEU GLY VAL ALA PRO TYR PRO SEQRES 23 B 423 ALA GLY PRO LYS GLY ARG TYR THR PHE PHE GLY GLY SER SEQRES 24 B 423 ASN LEU ALA LEU PHE ASN PHE SER LYS ASN LYS PRO LEU SEQRES 25 B 423 ALA LYS GLU LEU LEU LYS TYR LEU GLY GLY PRO GLU ALA SEQRES 26 B 423 GLN VAL ARG TYR ALA GLN MET THR GLY MET LEU PRO ALA SEQRES 27 B 423 LEU ARG SER ALA TRP SER ASP PRO SER PHE GLN GLN ASN SEQRES 28 B 423 PRO LEU LEU ARG THR PHE ILE GLN ALA ALA GLN PHE GLY SEQRES 29 B 423 ARG THR TYR PRO SER LEU ALA GLY TRP GLY GLY VAL GLU SEQRES 30 B 423 ASN LEU ALA VAL GLN HIS LEU GLY MET ALA TRP ASP LEU SEQRES 31 B 423 VAL ALA GLN GLY ARG LEU THR ARG GLU ALA LEU LYS ASP SEQRES 32 B 423 LEU MET ASP LYS ALA SER ALA ALA ILE ASN GLN ALA LEU SEQRES 33 B 423 ARG HIS HIS HIS HIS HIS HIS HET BGC C 1 12 HET BGC C 2 11 HET BGC D 1 12 HET BGC D 2 11 HET SO2 A 501 3 HET SO3 A 502 4 HET CO2 A 503 3 HET PGO A 504 5 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET PEG A 508 7 HET SO2 B 501 3 HET SO2 B 502 3 HET CO2 B 503 3 HET SO4 B 504 5 HET SO4 B 505 5 HET PO4 B 506 5 HET IMD B 507 5 HET PGO B 508 5 HET EDO B 509 4 HET PEG B 510 7 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM SO2 SULFUR DIOXIDE HETNAM SO3 SULFITE ION HETNAM CO2 CARBON DIOXIDE HETNAM PGO S-1,2-PROPANEDIOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM PO4 PHOSPHATE ION HETNAM IMD IMIDAZOLE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BGC 4(C6 H12 O6) FORMUL 5 SO2 3(O2 S) FORMUL 6 SO3 O3 S 2- FORMUL 7 CO2 2(C O2) FORMUL 8 PGO 2(C3 H8 O2) FORMUL 9 EDO 4(C2 H6 O2) FORMUL 12 PEG 2(C4 H10 O3) FORMUL 16 SO4 2(O4 S 2-) FORMUL 18 PO4 O4 P 3- FORMUL 19 IMD C3 H5 N2 1+ FORMUL 23 HOH *832(H2 O) HELIX 1 AA1 GLN A 14 GLY A 31 1 18 HELIX 2 AA2 VAL A 43 GLY A 55 1 13 HELIX 3 AA3 ALA A 67 MET A 74 1 8 HELIX 4 AA4 VAL A 80 LEU A 87 1 8 HELIX 5 AA5 GLY A 89 TYR A 93 5 5 HELIX 6 AA6 LEU A 94 ARG A 99 1 6 HELIX 7 AA7 THR A 100 ARG A 102 5 3 HELIX 8 AA8 THR A 125 ALA A 131 1 7 HELIX 9 AA9 ASN A 134 PHE A 139 1 6 HELIX 10 AB1 SER A 141 SER A 155 1 15 HELIX 11 AB2 ASP A 178 ALA A 190 1 13 HELIX 12 AB3 SER A 208 LYS A 224 1 17 HELIX 13 AB4 PRO A 228 LYS A 234 5 7 HELIX 14 AB5 ASN A 235 ALA A 245 1 11 HELIX 15 AB6 PRO A 255 ALA A 261 1 7 HELIX 16 AB7 GLN A 262 VAL A 263 5 2 HELIX 17 AB8 PRO A 264 GLY A 268 5 5 HELIX 18 AB9 ARG A 273 ASN A 278 1 6 HELIX 19 AC1 ASN A 308 GLY A 321 1 14 HELIX 20 AC2 GLY A 321 GLY A 333 1 13 HELIX 21 AC3 LEU A 338 SER A 343 5 6 HELIX 22 AC4 ASP A 344 GLN A 349 1 6 HELIX 23 AC5 ASN A 350 GLN A 361 1 12 HELIX 24 AC6 GLY A 371 GLN A 392 1 22 HELIX 25 AC7 THR A 396 ARG A 416 1 21 HELIX 26 AC8 GLN B 14 GLY B 31 1 18 HELIX 27 AC9 ASP B 40 GLY B 55 1 16 HELIX 28 AD1 ALA B 67 MET B 74 1 8 HELIX 29 AD2 VAL B 80 LEU B 87 1 8 HELIX 30 AD3 GLY B 88 TYR B 93 5 6 HELIX 31 AD4 LEU B 94 ARG B 99 1 6 HELIX 32 AD5 THR B 100 ARG B 102 5 3 HELIX 33 AD6 THR B 125 GLY B 132 1 8 HELIX 34 AD7 ASN B 134 PHE B 139 1 6 HELIX 35 AD8 SER B 141 SER B 155 1 15 HELIX 36 AD9 ASP B 178 ALA B 190 1 13 HELIX 37 AE1 SER B 208 ALA B 222 1 15 HELIX 38 AE2 PRO B 228 LYS B 234 5 7 HELIX 39 AE3 ASN B 235 ALA B 245 1 11 HELIX 40 AE4 PRO B 255 ALA B 261 1 7 HELIX 41 AE5 GLN B 262 VAL B 263 5 2 HELIX 42 AE6 PRO B 264 GLY B 268 5 5 HELIX 43 AE7 ARG B 273 ASN B 278 1 6 HELIX 44 AE8 ASN B 308 GLY B 321 1 14 HELIX 45 AE9 GLY B 321 GLY B 333 1 13 HELIX 46 AF1 LEU B 338 SER B 343 5 6 HELIX 47 AF2 ASP B 344 GLN B 349 1 6 HELIX 48 AF3 ASN B 350 GLN B 361 1 12 HELIX 49 AF4 GLY B 371 GLN B 392 1 22 HELIX 50 AF5 THR B 396 ARG B 416 1 21 SHEET 1 AA1 6 VAL A 32 VAL A 38 0 SHEET 2 AA1 6 LYS A 2 ILE A 8 1 N LEU A 4 O LYS A 35 SHEET 3 AA1 6 LEU A 60 GLY A 64 1 O GLN A 62 N TRP A 7 SHEET 4 AA1 6 THR A 293 LEU A 302 -1 O ASN A 299 N LEU A 63 SHEET 5 AA1 6 VAL A 112 LEU A 118 -1 N VAL A 112 O LEU A 300 SHEET 6 AA1 6 LEU A 335 PRO A 336 -1 O LEU A 335 N SER A 116 SHEET 1 AA2 5 VAL A 32 VAL A 38 0 SHEET 2 AA2 5 LYS A 2 ILE A 8 1 N LEU A 4 O LYS A 35 SHEET 3 AA2 5 LEU A 60 GLY A 64 1 O GLN A 62 N TRP A 7 SHEET 4 AA2 5 THR A 293 LEU A 302 -1 O ASN A 299 N LEU A 63 SHEET 5 AA2 5 GLY A 363 ARG A 364 1 O ARG A 364 N THR A 293 SHEET 1 AA3 3 VAL A 250 SER A 253 0 SHEET 2 AA3 3 ALA A 120 ARG A 124 -1 N TYR A 122 O PHE A 251 SHEET 3 AA3 3 LEU A 279 ALA A 282 -1 O ALA A 282 N PHE A 121 SHEET 1 AA4 2 VAL A 195 ALA A 198 0 SHEET 2 AA4 2 ARG A 201 SER A 204 -1 O ARG A 201 N ALA A 198 SHEET 1 AA5 6 GLU B 33 VAL B 38 0 SHEET 2 AA5 6 THR B 3 ILE B 8 1 N LEU B 4 O LYS B 35 SHEET 3 AA5 6 LEU B 60 GLY B 64 1 O GLN B 62 N TRP B 7 SHEET 4 AA5 6 THR B 293 LEU B 302 -1 O ASN B 299 N LEU B 63 SHEET 5 AA5 6 VAL B 112 LEU B 118 -1 N VAL B 112 O LEU B 300 SHEET 6 AA5 6 LEU B 335 PRO B 336 -1 O LEU B 335 N SER B 116 SHEET 1 AA6 5 GLU B 33 VAL B 38 0 SHEET 2 AA6 5 THR B 3 ILE B 8 1 N LEU B 4 O LYS B 35 SHEET 3 AA6 5 LEU B 60 GLY B 64 1 O GLN B 62 N TRP B 7 SHEET 4 AA6 5 THR B 293 LEU B 302 -1 O ASN B 299 N LEU B 63 SHEET 5 AA6 5 GLY B 363 ARG B 364 1 O ARG B 364 N THR B 293 SHEET 1 AA7 4 ALA B 167 LEU B 169 0 SHEET 2 AA7 4 CYS B 248 SER B 253 1 O ALA B 249 N ALA B 167 SHEET 3 AA7 4 ALA B 120 ARG B 124 -1 N TYR B 122 O PHE B 251 SHEET 4 AA7 4 LEU B 279 ALA B 282 -1 O ALA B 282 N PHE B 121 SHEET 1 AA8 2 VAL B 195 ARG B 196 0 SHEET 2 AA8 2 GLN B 203 SER B 204 -1 O GLN B 203 N ARG B 196 SSBOND 1 CYS A 170 CYS A 248 1555 1555 2.16 SSBOND 2 CYS B 170 CYS B 248 1555 1555 2.12 LINK O6 BGC C 1 C1 BGC C 2 1555 1555 1.43 LINK O6 BGC D 1 C1 BGC D 2 1555 1555 1.45 CRYST1 55.240 98.960 66.560 90.00 103.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018103 0.000000 0.004263 0.00000 SCALE2 0.000000 0.010105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015435 0.00000