HEADER TOXIN 11-JUN-20 7CB8 TITLE STRUCTURE OF A FIC-DOMAIN PROTEIN FROM MYCOBACTERIUM MARINUM IN TITLE 2 COMPLEX WITH CDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIC-DOMAIN CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM (STRAIN ATCC BAA-535 / SOURCE 3 M); SOURCE 4 ORGANISM_TAXID: 216594; SOURCE 5 STRAIN: ATCC BAA-535 / M; SOURCE 6 GENE: MMAR_0586; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN, FIC PROTEIN, CYTIDYLYLTRANSFERASE, NUCLEOTIDYLTRANSFERASE KEYWDS 2 ACTIVITY EXPDTA X-RAY DIFFRACTION AUTHOR S.KUMAR,A.SINGH,A.PENMATSA,A.SUROLIA REVDAT 2 29-NOV-23 7CB8 1 REMARK REVDAT 1 18-AUG-21 7CB8 0 JRNL AUTH S.KUMAR,A.SINGH,A.PENMATSA,A.SUROLIA JRNL TITL STRUCTURE OF OF A FIC-DOMAIN PROTEIN FROM MYCOBACTERIUM JRNL TITL 2 MARINUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1-2575-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 27884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4800 - 5.5990 0.94 2731 145 0.1772 0.2086 REMARK 3 2 5.5990 - 4.4450 0.96 2658 141 0.1667 0.1820 REMARK 3 3 4.4450 - 3.8834 0.97 2643 137 0.1619 0.2307 REMARK 3 4 3.8834 - 3.5285 0.97 2648 135 0.1793 0.2153 REMARK 3 5 3.5285 - 3.2756 0.98 2688 107 0.2040 0.2901 REMARK 3 6 3.2756 - 3.0825 0.97 2619 128 0.2177 0.2817 REMARK 3 7 3.0825 - 2.9282 0.98 2635 123 0.2292 0.3299 REMARK 3 8 2.9282 - 2.8007 0.98 2639 141 0.2455 0.3226 REMARK 3 9 2.8007 - 2.6929 0.99 2635 141 0.2402 0.3407 REMARK 3 10 2.6929 - 2.6000 0.99 2654 136 0.2316 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6131 REMARK 3 ANGLE : 1.090 8348 REMARK 3 CHIRALITY : 0.056 984 REMARK 3 PLANARITY : 0.008 1083 REMARK 3 DIHEDRAL : 12.372 3694 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27934 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZCN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE, AND 25% (W/V) PEG 4,000, PH 4.6, MICROBATCH, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.03300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.29400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.29400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.03300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 72 REMARK 465 THR A 73 REMARK 465 HIS A 74 REMARK 465 LYS A 373 REMARK 465 PRO A 400 REMARK 465 SER A 401 REMARK 465 VAL A 402 REMARK 465 ARG A 403 REMARK 465 LYS A 404 REMARK 465 LEU A 405 REMARK 465 GLU A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 72 REMARK 465 THR B 73 REMARK 465 HIS B 74 REMARK 465 ASP B 347 REMARK 465 PRO B 400 REMARK 465 SER B 401 REMARK 465 VAL B 402 REMARK 465 ARG B 403 REMARK 465 LYS B 404 REMARK 465 LEU B 405 REMARK 465 GLU B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 465 HIS B 409 REMARK 465 HIS B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 14 CD NE CZ NH1 NH2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 THR A 157 OG1 CG2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLN A 160 CG CD OE1 NE2 REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 326 CE NZ REMARK 470 ASP A 340 CG OD1 OD2 REMARK 470 ASP A 347 CG OD1 OD2 REMARK 470 ARG A 350 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 372 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 374 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 21 CG CD OE1 NE2 REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 71 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 135 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 THR B 157 OG1 CG2 REMARK 470 ILE B 318 CG1 CG2 CD1 REMARK 470 ARG B 319 NE CZ NH1 NH2 REMARK 470 ARG B 320 CG CD NE CZ NH1 NH2 REMARK 470 SER B 322 OG REMARK 470 LYS B 326 CD CE NZ REMARK 470 ARG B 350 CG CD NE CZ NH1 NH2 REMARK 470 SER B 351 OG REMARK 470 PHE B 354 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 ARG B 372 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 374 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 135 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 ARG B 266 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ILE B 318 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG B 374 CB - CA - C ANGL. DEV. = 25.3 DEGREES REMARK 500 ASP B 375 N - CA - CB ANGL. DEV. = 17.2 DEGREES REMARK 500 ASP B 375 N - CA - C ANGL. DEV. = -27.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 -169.34 -70.05 REMARK 500 ASN A 134 37.31 36.74 REMARK 500 ARG A 135 42.43 -100.88 REMARK 500 THR A 157 -1.31 59.81 REMARK 500 ASN A 181 19.59 58.10 REMARK 500 THR A 250 -38.78 -133.28 REMARK 500 ALA A 348 154.06 176.40 REMARK 500 GLN B 21 -157.77 -95.28 REMARK 500 ASP B 50 116.08 84.54 REMARK 500 GLU B 94 32.53 -92.43 REMARK 500 GLU B 158 -161.40 -113.00 REMARK 500 THR B 250 -40.06 -135.05 REMARK 500 ILE B 318 47.33 36.27 REMARK 500 ARG B 320 -176.16 -68.81 REMARK 500 ARG B 350 -178.13 -175.82 REMARK 500 SER B 351 -55.65 69.32 REMARK 500 ARG B 372 -121.38 53.71 REMARK 500 LYS B 373 -11.87 72.32 REMARK 500 ARG B 374 -52.20 77.01 REMARK 500 ASP B 375 73.90 -116.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CDP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 510 DBREF 7CB8 A 1 404 UNP B2HP08 B2HP08_MYCMM 1 404 DBREF 7CB8 B 1 404 UNP B2HP08 B2HP08_MYCMM 1 404 SEQADV 7CB8 LEU A 405 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 GLU A 406 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS A 407 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS A 408 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS A 409 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS A 410 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS A 411 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS A 412 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 LEU B 405 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 GLU B 406 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS B 407 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS B 408 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS B 409 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS B 410 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS B 411 UNP B2HP08 EXPRESSION TAG SEQADV 7CB8 HIS B 412 UNP B2HP08 EXPRESSION TAG SEQRES 1 A 412 MET ARG PRO SER ASP ALA TRP PRO ARG HIS SER ALA GLU SEQRES 2 A 412 ARG ARG PRO TRP ALA GLN THR GLN ARG GLY GLY THR ARG SEQRES 3 A 412 ALA ASP ARG THR LEU ARG SER VAL THR VAL SER LEU PRO SEQRES 4 A 412 PRO TYR ILE ALA LYS VAL ASP ALA ASN ILE ASP ALA ASP SEQRES 5 A 412 ILE ALA VAL LYS LEU GLU ASP ALA MET SER GLU ILE SER SEQRES 6 A 412 ARG LEU ASP SER THR HIS GLY THR HIS LEU ALA GLY LEU SEQRES 7 A 412 SER THR LEU LEU LEU ARG THR GLU SER VAL ALA SER SER SEQRES 8 A 412 LYS ILE GLU ARG VAL GLU ALA SER VAL ASP ASP TYR ALA SEQRES 9 A 412 ARG ALA LEU HIS GLY GLY ARG GLY ASN SER SER ALA VAL SEQRES 10 A 412 SER MET VAL ALA ALA THR THR ALA LEU LYS GLU MET ILE SEQRES 11 A 412 ALA SER VAL ASN ARG ASP ALA PRO ILE GLN MET THR ALA SEQRES 12 A 412 ILE LEU ARG ALA HIS GLU ALA LEU MET ARG GLU ASP PRO SEQRES 13 A 412 THR GLU GLY GLN HIS ALA GLY GLN VAL ARG THR VAL GLN SEQRES 14 A 412 ASN TRP ILE GLY GLY SER ASP TYR SER PRO ARG ASN ALA SEQRES 15 A 412 LEU TYR VAL PRO PRO PRO PRO ASP THR VAL HIS ALA TYR SEQRES 16 A 412 MET ASP ASP LEU ILE GLU PHE ALA ASN ARG THR ASP ILE SEQRES 17 A 412 PRO VAL LEU ILE GLN ALA ALA ILE ALA HIS ALA GLN PHE SEQRES 18 A 412 GLU SER ILE HIS PRO PHE THR ASP GLY ASN GLY ARG ILE SEQRES 19 A 412 GLY ARG ALA LEU ILE ASN THR VAL LEU ARG ARG ARG GLY SEQRES 20 A 412 ALA THR THR ARG LEU VAL VAL PRO LEU ALA SER ALA LEU SEQRES 21 A 412 VAL ALA HIS ARG GLU ARG TYR PHE GLY ALA LEU ASN THR SEQRES 22 A 412 TYR ARG ALA GLY ASP LEU ARG PRO LEU ILE VAL THR PHE SEQRES 23 A 412 ALA ASN SER SER ARG THR ALA ALA ALA GLU SER ARG ILE SEQRES 24 A 412 THR ALA GLU ARG LEU ALA GLU ILE PRO VAL GLU TRP ARG SEQRES 25 A 412 ASN MET VAL GLY PRO ILE ARG ARG HIS SER ALA THR ASP SEQRES 26 A 412 LYS LEU LEU LEU LEU LEU PRO SER THR PRO ILE VAL SER SEQRES 27 A 412 SER ASP ASP VAL ALA SER LEU ILE ASP ALA PRO ARG SER SEQRES 28 A 412 SER VAL PHE ALA ALA ILE LYS ARG LEU HIS ASP THR GLY SEQRES 29 A 412 VAL LEU ARG PRO LEU THR ASN ARG LYS ARG ASP GLN VAL SEQRES 30 A 412 TRP GLY ALA SER LEU VAL LEU ASP GLU LEU ASP ASP LEU SEQRES 31 A 412 GLY HIS ARG ILE GLU ARG ALA SER ALA PRO SER VAL ARG SEQRES 32 A 412 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 412 MET ARG PRO SER ASP ALA TRP PRO ARG HIS SER ALA GLU SEQRES 2 B 412 ARG ARG PRO TRP ALA GLN THR GLN ARG GLY GLY THR ARG SEQRES 3 B 412 ALA ASP ARG THR LEU ARG SER VAL THR VAL SER LEU PRO SEQRES 4 B 412 PRO TYR ILE ALA LYS VAL ASP ALA ASN ILE ASP ALA ASP SEQRES 5 B 412 ILE ALA VAL LYS LEU GLU ASP ALA MET SER GLU ILE SER SEQRES 6 B 412 ARG LEU ASP SER THR HIS GLY THR HIS LEU ALA GLY LEU SEQRES 7 B 412 SER THR LEU LEU LEU ARG THR GLU SER VAL ALA SER SER SEQRES 8 B 412 LYS ILE GLU ARG VAL GLU ALA SER VAL ASP ASP TYR ALA SEQRES 9 B 412 ARG ALA LEU HIS GLY GLY ARG GLY ASN SER SER ALA VAL SEQRES 10 B 412 SER MET VAL ALA ALA THR THR ALA LEU LYS GLU MET ILE SEQRES 11 B 412 ALA SER VAL ASN ARG ASP ALA PRO ILE GLN MET THR ALA SEQRES 12 B 412 ILE LEU ARG ALA HIS GLU ALA LEU MET ARG GLU ASP PRO SEQRES 13 B 412 THR GLU GLY GLN HIS ALA GLY GLN VAL ARG THR VAL GLN SEQRES 14 B 412 ASN TRP ILE GLY GLY SER ASP TYR SER PRO ARG ASN ALA SEQRES 15 B 412 LEU TYR VAL PRO PRO PRO PRO ASP THR VAL HIS ALA TYR SEQRES 16 B 412 MET ASP ASP LEU ILE GLU PHE ALA ASN ARG THR ASP ILE SEQRES 17 B 412 PRO VAL LEU ILE GLN ALA ALA ILE ALA HIS ALA GLN PHE SEQRES 18 B 412 GLU SER ILE HIS PRO PHE THR ASP GLY ASN GLY ARG ILE SEQRES 19 B 412 GLY ARG ALA LEU ILE ASN THR VAL LEU ARG ARG ARG GLY SEQRES 20 B 412 ALA THR THR ARG LEU VAL VAL PRO LEU ALA SER ALA LEU SEQRES 21 B 412 VAL ALA HIS ARG GLU ARG TYR PHE GLY ALA LEU ASN THR SEQRES 22 B 412 TYR ARG ALA GLY ASP LEU ARG PRO LEU ILE VAL THR PHE SEQRES 23 B 412 ALA ASN SER SER ARG THR ALA ALA ALA GLU SER ARG ILE SEQRES 24 B 412 THR ALA GLU ARG LEU ALA GLU ILE PRO VAL GLU TRP ARG SEQRES 25 B 412 ASN MET VAL GLY PRO ILE ARG ARG HIS SER ALA THR ASP SEQRES 26 B 412 LYS LEU LEU LEU LEU LEU PRO SER THR PRO ILE VAL SER SEQRES 27 B 412 SER ASP ASP VAL ALA SER LEU ILE ASP ALA PRO ARG SER SEQRES 28 B 412 SER VAL PHE ALA ALA ILE LYS ARG LEU HIS ASP THR GLY SEQRES 29 B 412 VAL LEU ARG PRO LEU THR ASN ARG LYS ARG ASP GLN VAL SEQRES 30 B 412 TRP GLY ALA SER LEU VAL LEU ASP GLU LEU ASP ASP LEU SEQRES 31 B 412 GLY HIS ARG ILE GLU ARG ALA SER ALA PRO SER VAL ARG SEQRES 32 B 412 LYS LEU GLU HIS HIS HIS HIS HIS HIS HET CDP A 501 25 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET SO4 A 506 5 HET ACT A 507 4 HET ACT A 508 4 HET ACT A 509 4 HET CDP B 501 25 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HET EDO B 506 4 HET SO4 B 507 5 HET SO4 B 508 5 HET ACT B 509 4 HET ACT B 510 4 HETNAM CDP CYTIDINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CDP 2(C9 H15 N3 O11 P2) FORMUL 4 EDO 9(C2 H6 O2) FORMUL 8 SO4 3(O4 S 2-) FORMUL 9 ACT 5(C2 H3 O2 1-) FORMUL 22 HOH *240(H2 O) HELIX 1 AA1 THR A 25 LEU A 31 1 7 HELIX 2 AA2 ASP A 50 SER A 69 1 20 HELIX 3 AA3 GLY A 77 GLU A 94 1 18 HELIX 4 AA4 SER A 99 HIS A 108 1 10 HELIX 5 AA5 ASN A 113 SER A 132 1 20 HELIX 6 AA6 GLN A 140 ARG A 153 1 14 HELIX 7 AA7 GLU A 158 ALA A 162 5 5 HELIX 8 AA8 PRO A 188 ASP A 190 5 3 HELIX 9 AA9 THR A 191 ALA A 203 1 13 HELIX 10 AB1 PRO A 209 HIS A 225 1 17 HELIX 11 AB2 GLY A 230 ARG A 246 1 17 HELIX 12 AB3 LEU A 256 HIS A 263 1 8 HELIX 13 AB4 HIS A 263 ALA A 276 1 14 HELIX 14 AB5 LEU A 279 GLY A 316 1 38 HELIX 15 AB6 SER A 322 LEU A 331 1 10 HELIX 16 AB7 SER A 339 ILE A 346 1 8 HELIX 17 AB8 PRO A 349 THR A 363 1 15 HELIX 18 AB9 SER A 381 ALA A 397 1 17 HELIX 19 AC1 THR B 25 LEU B 31 1 7 HELIX 20 AC2 ASP B 50 SER B 69 1 20 HELIX 21 AC3 GLY B 77 GLU B 94 1 18 HELIX 22 AC4 SER B 99 HIS B 108 1 10 HELIX 23 AC5 ASN B 113 SER B 132 1 20 HELIX 24 AC6 GLN B 140 ARG B 153 1 14 HELIX 25 AC7 PRO B 188 ASP B 190 5 3 HELIX 26 AC8 THR B 191 ARG B 205 1 15 HELIX 27 AC9 PRO B 209 HIS B 225 1 17 HELIX 28 AD1 GLY B 230 ARG B 246 1 17 HELIX 29 AD2 LEU B 256 HIS B 263 1 8 HELIX 30 AD3 HIS B 263 ALA B 276 1 14 HELIX 31 AD4 LEU B 279 GLY B 316 1 38 HELIX 32 AD5 SER B 322 LEU B 331 1 10 HELIX 33 AD6 SER B 339 ILE B 346 1 8 HELIX 34 AD7 SER B 352 THR B 363 1 12 HELIX 35 AD8 SER B 381 ALA B 397 1 17 SHEET 1 AA1 2 SER A 11 PRO A 16 0 SHEET 2 AA1 2 SER A 33 LEU A 38 -1 O LEU A 38 N SER A 11 SHEET 1 AA2 3 ILE A 336 SER A 338 0 SHEET 2 AA2 3 VAL A 377 ALA A 380 -1 O TRP A 378 N VAL A 337 SHEET 3 AA2 3 LEU A 366 PRO A 368 -1 N ARG A 367 O GLY A 379 SHEET 1 AA3 2 SER B 11 PRO B 16 0 SHEET 2 AA3 2 SER B 33 LEU B 38 -1 O LEU B 38 N SER B 11 SHEET 1 AA4 3 ILE B 336 SER B 338 0 SHEET 2 AA4 3 VAL B 377 ALA B 380 -1 O TRP B 378 N VAL B 337 SHEET 3 AA4 3 LEU B 366 PRO B 368 -1 N ARG B 367 O GLY B 379 SITE 1 AC1 19 GLU A 94 LEU A 183 GLU A 222 HIS A 225 SITE 2 AC1 19 ASP A 229 GLY A 230 ASN A 231 GLY A 232 SITE 3 AC1 19 ARG A 233 ARG A 236 TYR A 267 PHE A 268 SITE 4 AC1 19 LEU A 271 ASN A 272 ARG A 275 HOH A 603 SITE 5 AC1 19 HOH A 634 HOH A 636 HOH A 666 SITE 1 AC2 5 LEU A 75 ALA A 76 GLY A 77 SER A 79 SITE 2 AC2 5 THR A 80 SITE 1 AC3 3 ARG A 22 ARG A 26 ARG A 29 SITE 1 AC4 8 HIS A 148 HIS A 161 GLN A 164 VAL A 165 SITE 2 AC4 8 ARG A 166 PHE A 227 THR A 228 ASP A 229 SITE 1 AC5 6 TRP A 311 MET A 314 GLY A 364 VAL A 365 SITE 2 AC5 6 SER A 381 LEU A 382 SITE 1 AC6 8 THR A 25 ARG A 180 HOH A 618 HOH A 638 SITE 2 AC6 8 HOH A 645 GLY B 110 ARG B 111 GLY B 112 SITE 1 AC7 4 ARG A 264 GLU A 265 HOH A 668 LYS B 92 SITE 1 AC8 3 ASN A 371 ARG A 372 ARG B 180 SITE 1 AC9 6 SER A 87 SER A 90 ALA A 122 LEU A 126 SITE 2 AC9 6 ARG A 233 ALA A 237 SITE 1 AD1 19 GLU B 94 ILE B 172 LEU B 183 GLU B 222 SITE 2 AD1 19 HIS B 225 ASP B 229 GLY B 230 ASN B 231 SITE 3 AD1 19 GLY B 232 ARG B 233 ARG B 236 TYR B 267 SITE 4 AD1 19 PHE B 268 LEU B 271 ASN B 272 ARG B 275 SITE 5 AD1 19 HOH B 601 HOH B 657 HOH B 675 SITE 1 AD2 4 LEU B 75 GLY B 77 SER B 79 THR B 80 SITE 1 AD3 5 ARG A 111 GLY B 24 THR B 25 ARG B 26 SITE 2 AD3 5 ARG B 29 SITE 1 AD4 2 SER B 322 HOH B 656 SITE 1 AD5 8 GLU A 58 MET A 61 SER A 62 SER A 65 SITE 2 AD5 8 GLU B 58 MET B 61 SER B 62 SER B 65 SITE 1 AD6 6 ARG A 396 HIS B 263 ARG B 264 GLU B 265 SITE 2 AD6 6 ARG B 266 ACT B 509 SITE 1 AD7 5 ARG A 180 THR B 370 ASN B 371 LYS B 373 SITE 2 AD7 5 HOH B 626 SITE 1 AD8 7 GLY A 110 ARG A 111 GLY A 112 THR B 25 SITE 2 AD8 7 ALA B 27 ARG B 180 HOH B 635 SITE 1 AD9 7 LYS A 92 VAL B 261 ALA B 262 ARG B 264 SITE 2 AD9 7 GLU B 265 EDO B 506 HOH B 617 SITE 1 AE1 5 SER B 90 ALA B 122 LEU B 126 ARG B 233 SITE 2 AE1 5 ALA B 237 CRYST1 76.066 107.900 110.588 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013146 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009043 0.00000