HEADER LIGASE/INHIBITOR 12-JUN-20 7CBI TITLE CRYSTAL STRUCTURE OF THREONYL-TRNA SYNTHETASE (THRRS) FROM SALMONELLA TITLE 2 ENTERICA IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THREONYL-TRNA SYNTHETASE,THRRS; COMPND 5 EC: 6.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 CUBANA STR. 76814; SOURCE 4 ORGANISM_TAXID: 1192560; SOURCE 5 GENE: THRS, A628_05061; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIGASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GUO,B.CHEN,H.ZHOU REVDAT 2 29-NOV-23 7CBI 1 REMARK REVDAT 1 07-OCT-20 7CBI 0 JRNL AUTH J.GUO,B.CHEN,Y.YU,B.CHENG,Y.JU,J.TANG,Z.CAI,Q.GU,J.XU,H.ZHOU JRNL TITL STRUCTURE-GUIDED OPTIMIZATION AND MECHANISTIC STUDY OF A JRNL TITL 2 CLASS OF QUINAZOLINONE-THREONINE HYBRIDS AS ANTIBACTERIAL JRNL TITL 3 THRRS INHIBITORS. JRNL REF EUR.J.MED.CHEM. V. 207 12848 2020 JRNL REFN ISSN 0223-5234 JRNL PMID 32980741 JRNL DOI 10.1016/J.EJMECH.2020.112848 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 115070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6078 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 481 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 725 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.28000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.560 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6785 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6212 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9159 ; 1.197 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14395 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 824 ; 5.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 353 ;32.528 ;23.598 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1215 ;12.168 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;13.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 959 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7704 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1474 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3230 ; 0.737 ; 1.725 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3229 ; 0.737 ; 1.725 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4040 ; 1.265 ; 2.585 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4041 ; 1.264 ; 2.585 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3555 ; 1.037 ; 1.879 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3555 ; 1.037 ; 1.879 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5108 ; 1.683 ; 2.765 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7812 ; 3.614 ;21.041 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7813 ; 3.614 ;21.044 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7CBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121233 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 72.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6L2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.24 M LITHIUM ACETATE PH 7.5, 18% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.03850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.77400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.58100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.77400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.03850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.58100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 240 REMARK 465 GLU A 642 REMARK 465 LEU A 643 REMARK 465 GLU A 644 REMARK 465 HIS A 645 REMARK 465 HIS A 646 REMARK 465 HIS A 647 REMARK 465 HIS A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 MET B 240 REMARK 465 GLU B 642 REMARK 465 LEU B 643 REMARK 465 GLU B 644 REMARK 465 HIS B 645 REMARK 465 HIS B 646 REMARK 465 HIS B 647 REMARK 465 HIS B 648 REMARK 465 HIS B 649 REMARK 465 HIS B 650 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 311 CG OD1 OD2 REMARK 470 LYS A 426 CE NZ REMARK 470 LYS A 599 CD CE NZ REMARK 470 LYS A 614 CE NZ REMARK 470 GLU A 626 CG CD OE1 OE2 REMARK 470 GLU A 641 CG CD OE1 OE2 REMARK 470 LEU B 345 CD1 CD2 REMARK 470 GLU B 432 CD OE1 OE2 REMARK 470 ASP B 501 CG OD1 OD2 REMARK 470 GLU B 503 CG CD OE1 OE2 REMARK 470 LYS B 614 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 480 -50.17 -125.50 REMARK 500 CYS B 480 -50.87 -124.63 REMARK 500 PRO B 534 150.36 -48.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1225 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1226 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1227 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B1098 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 334 SG REMARK 620 2 HIS A 385 NE2 101.5 REMARK 620 3 HIS A 511 ND1 104.7 98.4 REMARK 620 4 FQU A 702 N25 87.7 153.2 103.5 REMARK 620 5 FQU A 702 O26 145.3 84.6 108.2 74.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 334 SG REMARK 620 2 HIS B 385 NE2 95.9 REMARK 620 3 HIS B 511 ND1 107.1 94.2 REMARK 620 4 FQU B 703 O26 141.6 88.5 110.6 REMARK 620 5 FQU B 703 N25 87.9 157.8 105.6 75.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FQU A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FQU B 703 DBREF 7CBI A 242 642 UNP V7II86 V7II86_SALET 222 622 DBREF 7CBI B 242 642 UNP V7II86 V7II86_SALET 222 622 SEQADV 7CBI MET A 240 UNP V7II86 INITIATING METHIONINE SEQADV 7CBI GLY A 241 UNP V7II86 EXPRESSION TAG SEQADV 7CBI LEU A 643 UNP V7II86 EXPRESSION TAG SEQADV 7CBI GLU A 644 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS A 645 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS A 646 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS A 647 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS A 648 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS A 649 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS A 650 UNP V7II86 EXPRESSION TAG SEQADV 7CBI MET B 240 UNP V7II86 INITIATING METHIONINE SEQADV 7CBI GLY B 241 UNP V7II86 EXPRESSION TAG SEQADV 7CBI LEU B 643 UNP V7II86 EXPRESSION TAG SEQADV 7CBI GLU B 644 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS B 645 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS B 646 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS B 647 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS B 648 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS B 649 UNP V7II86 EXPRESSION TAG SEQADV 7CBI HIS B 650 UNP V7II86 EXPRESSION TAG SEQRES 1 A 411 MET GLY ARG ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP SEQRES 2 A 411 LEU TYR HIS MET GLN GLU GLU ALA PRO GLY MET VAL PHE SEQRES 3 A 411 TRP HIS ASN ASP GLY TRP THR ILE PHE ARG GLU LEU GLU SEQRES 4 A 411 VAL PHE VAL ARG SER LYS LEU LYS GLU TYR GLN TYR GLN SEQRES 5 A 411 GLU VAL LYS GLY PRO PHE MET MET ASP ARG VAL LEU TRP SEQRES 6 A 411 GLU LYS THR GLY HIS TRP ASP ASN TYR LYS ASP ALA MET SEQRES 7 A 411 PHE THR THR SER SER GLU ASN ARG GLU TYR CYS ILE LYS SEQRES 8 A 411 PRO MET ASN CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN SEQRES 9 A 411 GLY LEU LYS SER TYR ARG ASP LEU PRO LEU ARG MET ALA SEQRES 10 A 411 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY ALA SEQRES 11 A 411 LEU HIS GLY LEU MET ARG VAL ARG GLY PHE THR GLN ASP SEQRES 12 A 411 ASP ALA HIS ILE PHE CYS THR GLU GLU GLN ILE ARG ASP SEQRES 13 A 411 GLU VAL ASN ALA CYS ILE ARG MET VAL TYR ASP MET TYR SEQRES 14 A 411 SER THR PHE GLY PHE GLU LYS ILE VAL VAL LYS LEU SER SEQRES 15 A 411 THR ARG PRO ASP LYS ARG ILE GLY SER ASP GLU MET TRP SEQRES 16 A 411 ASP ARG ALA GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU SEQRES 17 A 411 ASN ASN ILE PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA SEQRES 18 A 411 PHE TYR GLY PRO LYS ILE GLU PHE THR LEU TYR ASP CYS SEQRES 19 A 411 LEU ASP ARG ALA TRP GLN CYS GLY THR VAL GLN LEU ASP SEQRES 20 A 411 PHE SER LEU PRO SER ARG LEU SER ALA SER TYR VAL GLY SEQRES 21 A 411 GLU ASP ASN GLU ARG LYS VAL PRO VAL MET ILE HIS ARG SEQRES 22 A 411 ALA ILE LEU GLY SER MET GLU ARG PHE ILE GLY ILE LEU SEQRES 23 A 411 THR GLU GLU PHE ALA GLY PHE PHE PRO THR TRP LEU ALA SEQRES 24 A 411 PRO VAL GLN VAL VAL VAL MET ASN ILE THR ASP SER GLN SEQRES 25 A 411 SER GLU TYR VAL ASN GLU LEU THR GLN LYS LEU GLN ASN SEQRES 26 A 411 ALA GLY ILE ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS SEQRES 27 A 411 ILE GLY PHE LYS ILE ARG GLU HIS THR LEU ARG ARG VAL SEQRES 28 A 411 PRO TYR MET LEU VAL CYS GLY ASP LYS GLU VAL GLU ALA SEQRES 29 A 411 GLY LYS VAL ALA VAL ARG THR ARG ARG GLY LYS ASP LEU SEQRES 30 A 411 GLY SER LEU ASP VAL ASN ASP VAL ILE GLU LYS LEU GLN SEQRES 31 A 411 GLN GLU ILE ARG SER ARG SER LEU GLN GLN LEU GLU GLU SEQRES 32 A 411 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 411 MET GLY ARG ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP SEQRES 2 B 411 LEU TYR HIS MET GLN GLU GLU ALA PRO GLY MET VAL PHE SEQRES 3 B 411 TRP HIS ASN ASP GLY TRP THR ILE PHE ARG GLU LEU GLU SEQRES 4 B 411 VAL PHE VAL ARG SER LYS LEU LYS GLU TYR GLN TYR GLN SEQRES 5 B 411 GLU VAL LYS GLY PRO PHE MET MET ASP ARG VAL LEU TRP SEQRES 6 B 411 GLU LYS THR GLY HIS TRP ASP ASN TYR LYS ASP ALA MET SEQRES 7 B 411 PHE THR THR SER SER GLU ASN ARG GLU TYR CYS ILE LYS SEQRES 8 B 411 PRO MET ASN CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN SEQRES 9 B 411 GLY LEU LYS SER TYR ARG ASP LEU PRO LEU ARG MET ALA SEQRES 10 B 411 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY ALA SEQRES 11 B 411 LEU HIS GLY LEU MET ARG VAL ARG GLY PHE THR GLN ASP SEQRES 12 B 411 ASP ALA HIS ILE PHE CYS THR GLU GLU GLN ILE ARG ASP SEQRES 13 B 411 GLU VAL ASN ALA CYS ILE ARG MET VAL TYR ASP MET TYR SEQRES 14 B 411 SER THR PHE GLY PHE GLU LYS ILE VAL VAL LYS LEU SER SEQRES 15 B 411 THR ARG PRO ASP LYS ARG ILE GLY SER ASP GLU MET TRP SEQRES 16 B 411 ASP ARG ALA GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU SEQRES 17 B 411 ASN ASN ILE PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA SEQRES 18 B 411 PHE TYR GLY PRO LYS ILE GLU PHE THR LEU TYR ASP CYS SEQRES 19 B 411 LEU ASP ARG ALA TRP GLN CYS GLY THR VAL GLN LEU ASP SEQRES 20 B 411 PHE SER LEU PRO SER ARG LEU SER ALA SER TYR VAL GLY SEQRES 21 B 411 GLU ASP ASN GLU ARG LYS VAL PRO VAL MET ILE HIS ARG SEQRES 22 B 411 ALA ILE LEU GLY SER MET GLU ARG PHE ILE GLY ILE LEU SEQRES 23 B 411 THR GLU GLU PHE ALA GLY PHE PHE PRO THR TRP LEU ALA SEQRES 24 B 411 PRO VAL GLN VAL VAL VAL MET ASN ILE THR ASP SER GLN SEQRES 25 B 411 SER GLU TYR VAL ASN GLU LEU THR GLN LYS LEU GLN ASN SEQRES 26 B 411 ALA GLY ILE ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS SEQRES 27 B 411 ILE GLY PHE LYS ILE ARG GLU HIS THR LEU ARG ARG VAL SEQRES 28 B 411 PRO TYR MET LEU VAL CYS GLY ASP LYS GLU VAL GLU ALA SEQRES 29 B 411 GLY LYS VAL ALA VAL ARG THR ARG ARG GLY LYS ASP LEU SEQRES 30 B 411 GLY SER LEU ASP VAL ASN ASP VAL ILE GLU LYS LEU GLN SEQRES 31 B 411 GLN GLU ILE ARG SER ARG SER LEU GLN GLN LEU GLU GLU SEQRES 32 B 411 LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 701 1 HET FQU A 702 26 HET EDO A 703 4 HET GOL B 701 6 HET ZN B 702 1 HET FQU B 703 26 HETNAM ZN ZINC ION HETNAM FQU 5-(7-BROMANYL-6-CHLORANYL-4-OXIDANYLIDENE-QUINAZOLIN-3- HETNAM 2 FQU YL)PENTYL (2~{S},3~{R})-2-AZANYL-3-OXIDANYL-BUTANOATE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FQU 2(C17 H21 BR CL N3 O4) FORMUL 5 EDO C2 H6 O2 FORMUL 6 GOL C3 H8 O3 FORMUL 9 HOH *725(H2 O) HELIX 1 AA1 ASP A 243 LEU A 251 1 9 HELIX 2 AA2 HIS A 267 TYR A 288 1 22 HELIX 3 AA3 ARG A 301 LYS A 306 1 6 HELIX 4 AA4 HIS A 309 LYS A 314 1 6 HELIX 5 AA5 ASP A 315 MET A 317 5 3 HELIX 6 AA6 ASN A 333 ASN A 342 1 10 HELIX 7 AA7 SER A 347 LEU A 351 5 5 HELIX 8 AA8 PRO A 366 LEU A 370 5 5 HELIX 9 AA9 THR A 389 GLU A 391 5 3 HELIX 10 AB1 GLN A 392 PHE A 411 1 20 HELIX 11 AB2 SER A 430 ASN A 448 1 19 HELIX 12 AB3 SER A 488 LEU A 493 1 6 HELIX 13 AB4 MET A 518 ALA A 530 1 13 HELIX 14 AB5 PRO A 534 ALA A 538 5 5 HELIX 15 AB6 THR A 548 SER A 550 5 3 HELIX 16 AB7 GLN A 551 ALA A 565 1 15 HELIX 17 AB8 LYS A 577 ARG A 588 1 12 HELIX 18 AB9 GLY A 597 GLY A 604 1 8 HELIX 19 AC1 VAL A 621 SER A 634 1 14 HELIX 20 AC2 ASP B 243 LEU B 251 1 9 HELIX 21 AC3 HIS B 267 TYR B 288 1 22 HELIX 22 AC4 ARG B 301 GLY B 308 1 8 HELIX 23 AC5 GLY B 308 LYS B 314 1 7 HELIX 24 AC6 ASP B 315 MET B 317 5 3 HELIX 25 AC7 ASN B 333 ASN B 342 1 10 HELIX 26 AC8 SER B 347 LEU B 351 5 5 HELIX 27 AC9 PRO B 366 LEU B 370 5 5 HELIX 28 AD1 THR B 389 GLU B 391 5 3 HELIX 29 AD2 GLN B 392 PHE B 411 1 20 HELIX 30 AD3 SER B 430 ASN B 448 1 19 HELIX 31 AD4 SER B 488 LEU B 493 1 6 HELIX 32 AD5 SER B 517 ALA B 530 1 14 HELIX 33 AD6 PRO B 534 ALA B 538 5 5 HELIX 34 AD7 THR B 548 SER B 550 5 3 HELIX 35 AD8 GLN B 551 ALA B 565 1 15 HELIX 36 AD9 LYS B 577 ARG B 588 1 12 HELIX 37 AE1 GLY B 597 GLY B 604 1 8 HELIX 38 AE2 VAL B 621 SER B 634 1 14 SHEET 1 AA1 2 TYR A 254 HIS A 255 0 SHEET 2 AA1 2 PHE A 265 TRP A 266 -1 O PHE A 265 N HIS A 255 SHEET 1 AA2 8 GLN A 291 GLU A 292 0 SHEET 2 AA2 8 LEU A 353 HIS A 362 1 O ARG A 354 N GLN A 291 SHEET 3 AA2 8 GLY A 378 CYS A 388 -1 O PHE A 379 N CYS A 361 SHEET 4 AA2 8 VAL A 508 SER A 517 -1 O VAL A 508 N CYS A 388 SHEET 5 AA2 8 ALA A 477 ASP A 486 -1 N GLN A 484 O HIS A 511 SHEET 6 AA2 8 LYS A 465 TYR A 471 -1 N ILE A 466 O VAL A 483 SHEET 7 AA2 8 ILE A 416 SER A 421 -1 N VAL A 417 O THR A 469 SHEET 8 AA2 8 GLU A 453 GLN A 455 1 O GLU A 453 N LEU A 420 SHEET 1 AA3 3 MET A 298 ASP A 300 0 SHEET 2 AA3 3 ARG A 325 ILE A 329 -1 O CYS A 328 N MET A 299 SHEET 3 AA3 3 THR A 319 SER A 322 -1 N THR A 320 O TYR A 327 SHEET 1 AA4 2 TYR A 497 VAL A 498 0 SHEET 2 AA4 2 ARG A 504 LYS A 505 -1 O LYS A 505 N TYR A 497 SHEET 1 AA5 5 VAL A 569 ASP A 572 0 SHEET 2 AA5 5 VAL A 542 ASN A 546 1 N VAL A 544 O ASP A 572 SHEET 3 AA5 5 TYR A 592 CYS A 596 1 O LEU A 594 N VAL A 543 SHEET 4 AA5 5 LYS A 605 THR A 610 -1 O ALA A 607 N VAL A 595 SHEET 5 AA5 5 ASP A 615 ASP A 620 -1 O LEU A 619 N VAL A 606 SHEET 1 AA6 2 TYR B 254 HIS B 255 0 SHEET 2 AA6 2 PHE B 265 TRP B 266 -1 O PHE B 265 N HIS B 255 SHEET 1 AA7 8 GLN B 291 GLU B 292 0 SHEET 2 AA7 8 LEU B 353 HIS B 362 1 O ARG B 354 N GLN B 291 SHEET 3 AA7 8 GLY B 378 CYS B 388 -1 O HIS B 385 N MET B 355 SHEET 4 AA7 8 VAL B 508 ALA B 513 -1 O VAL B 508 N CYS B 388 SHEET 5 AA7 8 ALA B 477 ASP B 486 -1 N THR B 482 O ALA B 513 SHEET 6 AA7 8 LYS B 465 TYR B 471 -1 N ILE B 466 O VAL B 483 SHEET 7 AA7 8 ILE B 416 SER B 421 -1 N SER B 421 O LYS B 465 SHEET 8 AA7 8 GLU B 453 GLN B 455 1 O GLN B 455 N LEU B 420 SHEET 1 AA8 3 MET B 298 ASP B 300 0 SHEET 2 AA8 3 ARG B 325 ILE B 329 -1 O CYS B 328 N MET B 299 SHEET 3 AA8 3 THR B 319 SER B 322 -1 N THR B 320 O TYR B 327 SHEET 1 AA9 2 TYR B 497 VAL B 498 0 SHEET 2 AA9 2 ARG B 504 LYS B 505 -1 O LYS B 505 N TYR B 497 SHEET 1 AB1 5 VAL B 569 ASP B 572 0 SHEET 2 AB1 5 VAL B 542 ASN B 546 1 N VAL B 544 O ASP B 572 SHEET 3 AB1 5 TYR B 592 CYS B 596 1 O LEU B 594 N MET B 545 SHEET 4 AB1 5 LYS B 605 THR B 610 -1 O ALA B 607 N VAL B 595 SHEET 5 AB1 5 ASP B 615 ASP B 620 -1 O LEU B 616 N VAL B 608 LINK SG CYS A 334 ZN ZN A 701 1555 1555 2.34 LINK NE2 HIS A 385 ZN ZN A 701 1555 1555 2.05 LINK ND1 HIS A 511 ZN ZN A 701 1555 1555 2.06 LINK ZN ZN A 701 N25 FQU A 702 1555 1555 2.22 LINK ZN ZN A 701 O26 FQU A 702 1555 1555 2.27 LINK SG CYS B 334 ZN ZN B 702 1555 1555 2.36 LINK NE2 HIS B 385 ZN ZN B 702 1555 1555 2.09 LINK ND1 HIS B 511 ZN ZN B 702 1555 1555 2.10 LINK ZN ZN B 702 O26 FQU B 703 1555 1555 2.16 LINK ZN ZN B 702 N25 FQU B 703 1555 1555 2.26 CISPEP 1 LEU A 351 PRO A 352 0 -2.23 CISPEP 2 LEU B 351 PRO B 352 0 -2.46 SITE 1 AC1 4 CYS A 334 HIS A 385 HIS A 511 FQU A 702 SITE 1 AC2 12 TYR A 313 ALA A 316 PRO A 331 MET A 332 SITE 2 AC2 12 CYS A 334 ARG A 363 GLN A 381 ASP A 383 SITE 3 AC2 12 HIS A 385 HIS A 511 ZN A 701 HOH A1126 SITE 1 AC3 3 ARG A 349 PRO A 352 HOH A 900 SITE 1 AC4 9 LYS A 294 GLY A 295 PRO A 296 VAL B 264 SITE 2 AC4 9 TRP B 266 GLU B 519 HOH B 850 HOH B 910 SITE 3 AC4 9 HOH B 943 SITE 1 AC5 4 CYS B 334 HIS B 385 HIS B 511 FQU B 703 SITE 1 AC6 20 TYR B 313 ALA B 316 PRO B 331 MET B 332 SITE 2 AC6 20 CYS B 334 HIS B 362 ARG B 363 GLN B 381 SITE 3 AC6 20 ASP B 383 HIS B 385 TYR B 462 LYS B 465 SITE 4 AC6 20 THR B 482 GLN B 484 HIS B 511 ARG B 512 SITE 5 AC6 20 ALA B 513 ZN B 702 HOH B 900 HOH B 979 CRYST1 86.077 101.162 103.548 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009657 0.00000