HEADER SIGNALING PROTEIN 18-JUN-20 7CD1 TITLE CRYSTAL STRUCTURE OF INHIBITORY SMAD, SMAD7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 7; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SMAD7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SMAD7, MADH7, MADH8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: ESCHERICHIA COLI KEYWDS MH2 DOMAIN, SMAD, TGF-BETA, SIGNAL TRANSDUCTION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MURAYAMA,M.KATO-MURAYAMA,M.SHIROUZU REVDAT 2 29-NOV-23 7CD1 1 REMARK REVDAT 1 17-MAR-21 7CD1 0 JRNL AUTH K.MURAYAMA,M.KATO-MURAYAMA,Y.ITOH,K.MIYAZONO,K.MIYAZAWA, JRNL AUTH 2 M.SHIROUZU JRNL TITL STRUCTURAL BASIS FOR INHIBITORY EFFECTS OF SMAD7 ON TGF-BETA JRNL TITL 2 FAMILY SIGNALING. JRNL REF J.STRUCT.BIOL. V. 212 07661 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 33166654 JRNL DOI 10.1016/J.JSB.2020.107661 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 71091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5000 - 5.6100 1.00 2756 166 0.2014 0.2134 REMARK 3 2 5.6100 - 4.4500 1.00 2645 153 0.1503 0.1638 REMARK 3 3 4.4500 - 3.8900 1.00 2660 132 0.1443 0.1522 REMARK 3 4 3.8900 - 3.5300 1.00 2616 151 0.1472 0.1765 REMARK 3 5 3.5300 - 3.2800 1.00 2623 144 0.1510 0.1573 REMARK 3 6 3.2800 - 3.0900 1.00 2602 141 0.1630 0.1919 REMARK 3 7 3.0900 - 2.9300 1.00 2621 134 0.1784 0.2061 REMARK 3 8 2.9300 - 2.8100 1.00 2612 128 0.1869 0.2001 REMARK 3 9 2.8100 - 2.7000 1.00 2608 138 0.1826 0.2282 REMARK 3 10 2.7000 - 2.6000 1.00 2596 133 0.1905 0.2194 REMARK 3 11 2.6000 - 2.5200 1.00 2608 122 0.1812 0.2009 REMARK 3 12 2.5200 - 2.4500 1.00 2580 149 0.1895 0.2505 REMARK 3 13 2.4500 - 2.3900 1.00 2601 140 0.1842 0.1999 REMARK 3 14 2.3900 - 2.3300 1.00 2563 140 0.1815 0.2303 REMARK 3 15 2.3300 - 2.2800 1.00 2572 138 0.1860 0.2070 REMARK 3 16 2.2800 - 2.2300 1.00 2610 135 0.1833 0.2239 REMARK 3 17 2.2300 - 2.1800 1.00 2594 136 0.1879 0.2424 REMARK 3 18 2.1800 - 2.1400 1.00 2555 135 0.1793 0.2616 REMARK 3 19 2.1400 - 2.1000 1.00 2599 153 0.1864 0.2128 REMARK 3 20 2.1000 - 2.0700 1.00 2560 141 0.1831 0.2198 REMARK 3 21 2.0700 - 2.0300 1.00 2576 125 0.1864 0.2415 REMARK 3 22 2.0300 - 2.0000 1.00 2593 147 0.1913 0.2145 REMARK 3 23 2.0000 - 1.9700 1.00 2524 132 0.1982 0.2143 REMARK 3 24 1.9700 - 1.9500 1.00 2585 165 0.1947 0.2666 REMARK 3 25 1.9500 - 1.9200 1.00 2567 111 0.2204 0.2641 REMARK 3 26 1.9200 - 1.8900 0.95 2473 103 0.2299 0.2677 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.182 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6200 REMARK 3 ANGLE : 0.884 8436 REMARK 3 CHIRALITY : 0.060 865 REMARK 3 PLANARITY : 0.005 1091 REMARK 3 DIHEDRAL : 16.184 2262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KHX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CITRATE, MGSO4, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.61950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.61950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.60250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.71300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.60250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.71300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.61950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.60250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.71300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.61950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.60250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.71300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 240 REMARK 465 SER A 241 REMARK 465 PHE A 242 REMARK 465 THR A 243 REMARK 465 SER A 244 REMARK 465 SER A 245 REMARK 465 GLY A 246 REMARK 465 GLY B 240 REMARK 465 SER B 241 REMARK 465 PHE B 242 REMARK 465 THR B 243 REMARK 465 SER B 244 REMARK 465 SER B 245 REMARK 465 GLY B 246 REMARK 465 GLY C 240 REMARK 465 SER C 241 REMARK 465 PHE C 242 REMARK 465 THR C 243 REMARK 465 SER C 244 REMARK 465 SER C 245 REMARK 465 GLY C 246 REMARK 465 GLY D 240 REMARK 465 SER D 241 REMARK 465 PHE D 242 REMARK 465 THR D 243 REMARK 465 SER D 244 REMARK 465 SER D 245 REMARK 465 GLY D 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 269 -113.88 52.51 REMARK 500 VAL A 400 -48.83 76.16 REMARK 500 GLU B 269 -118.63 57.62 REMARK 500 VAL B 400 -53.11 74.91 REMARK 500 ASP C 248 -46.92 -131.70 REMARK 500 GLU C 269 -114.13 52.24 REMARK 500 ARG C 379 76.68 -120.00 REMARK 500 VAL C 400 -49.01 77.12 REMARK 500 GLU D 269 -116.71 54.70 REMARK 500 VAL D 400 -50.61 74.06 REMARK 500 CYS D 406 -7.34 87.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 503 DBREF 7CD1 A 247 426 UNP O35253 SMAD7_MOUSE 247 426 DBREF 7CD1 B 247 426 UNP O35253 SMAD7_MOUSE 247 426 DBREF 7CD1 C 247 426 UNP O35253 SMAD7_MOUSE 247 426 DBREF 7CD1 D 247 426 UNP O35253 SMAD7_MOUSE 247 426 SEQADV 7CD1 GLY A 240 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER A 241 UNP O35253 EXPRESSION TAG SEQADV 7CD1 PHE A 242 UNP O35253 EXPRESSION TAG SEQADV 7CD1 THR A 243 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER A 244 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER A 245 UNP O35253 EXPRESSION TAG SEQADV 7CD1 GLY A 246 UNP O35253 EXPRESSION TAG SEQADV 7CD1 GLY B 240 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER B 241 UNP O35253 EXPRESSION TAG SEQADV 7CD1 PHE B 242 UNP O35253 EXPRESSION TAG SEQADV 7CD1 THR B 243 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER B 244 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER B 245 UNP O35253 EXPRESSION TAG SEQADV 7CD1 GLY B 246 UNP O35253 EXPRESSION TAG SEQADV 7CD1 GLY C 240 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER C 241 UNP O35253 EXPRESSION TAG SEQADV 7CD1 PHE C 242 UNP O35253 EXPRESSION TAG SEQADV 7CD1 THR C 243 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER C 244 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER C 245 UNP O35253 EXPRESSION TAG SEQADV 7CD1 GLY C 246 UNP O35253 EXPRESSION TAG SEQADV 7CD1 GLY D 240 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER D 241 UNP O35253 EXPRESSION TAG SEQADV 7CD1 PHE D 242 UNP O35253 EXPRESSION TAG SEQADV 7CD1 THR D 243 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER D 244 UNP O35253 EXPRESSION TAG SEQADV 7CD1 SER D 245 UNP O35253 EXPRESSION TAG SEQADV 7CD1 GLY D 246 UNP O35253 EXPRESSION TAG SEQRES 1 A 187 GLY SER PHE THR SER SER GLY SER ASP SER GLN LEU LEU SEQRES 2 A 187 LEU GLU PRO GLY ASP ARG SER HIS TRP CYS VAL VAL ALA SEQRES 3 A 187 TYR TRP GLU GLU LYS THR ARG VAL GLY ARG LEU TYR CYS SEQRES 4 A 187 VAL GLN GLU PRO SER LEU ASP ILE PHE TYR ASP LEU PRO SEQRES 5 A 187 GLN GLY ASN GLY PHE CYS LEU GLY GLN LEU ASN SER ASP SEQRES 6 A 187 ASN LYS SER GLN LEU VAL GLN LYS VAL ARG SER LYS ILE SEQRES 7 A 187 GLY CYS GLY ILE GLN LEU THR ARG GLU VAL ASP GLY VAL SEQRES 8 A 187 TRP VAL TYR ASN ARG SER SER TYR PRO ILE PHE ILE LYS SEQRES 9 A 187 SER ALA THR LEU ASP ASN PRO ASP SER ARG THR LEU LEU SEQRES 10 A 187 VAL HIS LYS VAL PHE PRO GLY PHE SER ILE LYS ALA PHE SEQRES 11 A 187 ASP TYR GLU LYS ALA TYR SER LEU GLN ARG PRO ASN ASP SEQRES 12 A 187 HIS GLU PHE MET GLN GLN PRO TRP THR GLY PHE THR VAL SEQRES 13 A 187 GLN ILE SER PHE VAL LYS GLY TRP GLY GLN CYS TYR THR SEQRES 14 A 187 ARG GLN PHE ILE SER SER CYS PRO CYS TRP LEU GLU VAL SEQRES 15 A 187 ILE PHE ASN SER ARG SEQRES 1 B 187 GLY SER PHE THR SER SER GLY SER ASP SER GLN LEU LEU SEQRES 2 B 187 LEU GLU PRO GLY ASP ARG SER HIS TRP CYS VAL VAL ALA SEQRES 3 B 187 TYR TRP GLU GLU LYS THR ARG VAL GLY ARG LEU TYR CYS SEQRES 4 B 187 VAL GLN GLU PRO SER LEU ASP ILE PHE TYR ASP LEU PRO SEQRES 5 B 187 GLN GLY ASN GLY PHE CYS LEU GLY GLN LEU ASN SER ASP SEQRES 6 B 187 ASN LYS SER GLN LEU VAL GLN LYS VAL ARG SER LYS ILE SEQRES 7 B 187 GLY CYS GLY ILE GLN LEU THR ARG GLU VAL ASP GLY VAL SEQRES 8 B 187 TRP VAL TYR ASN ARG SER SER TYR PRO ILE PHE ILE LYS SEQRES 9 B 187 SER ALA THR LEU ASP ASN PRO ASP SER ARG THR LEU LEU SEQRES 10 B 187 VAL HIS LYS VAL PHE PRO GLY PHE SER ILE LYS ALA PHE SEQRES 11 B 187 ASP TYR GLU LYS ALA TYR SER LEU GLN ARG PRO ASN ASP SEQRES 12 B 187 HIS GLU PHE MET GLN GLN PRO TRP THR GLY PHE THR VAL SEQRES 13 B 187 GLN ILE SER PHE VAL LYS GLY TRP GLY GLN CYS TYR THR SEQRES 14 B 187 ARG GLN PHE ILE SER SER CYS PRO CYS TRP LEU GLU VAL SEQRES 15 B 187 ILE PHE ASN SER ARG SEQRES 1 C 187 GLY SER PHE THR SER SER GLY SER ASP SER GLN LEU LEU SEQRES 2 C 187 LEU GLU PRO GLY ASP ARG SER HIS TRP CYS VAL VAL ALA SEQRES 3 C 187 TYR TRP GLU GLU LYS THR ARG VAL GLY ARG LEU TYR CYS SEQRES 4 C 187 VAL GLN GLU PRO SER LEU ASP ILE PHE TYR ASP LEU PRO SEQRES 5 C 187 GLN GLY ASN GLY PHE CYS LEU GLY GLN LEU ASN SER ASP SEQRES 6 C 187 ASN LYS SER GLN LEU VAL GLN LYS VAL ARG SER LYS ILE SEQRES 7 C 187 GLY CYS GLY ILE GLN LEU THR ARG GLU VAL ASP GLY VAL SEQRES 8 C 187 TRP VAL TYR ASN ARG SER SER TYR PRO ILE PHE ILE LYS SEQRES 9 C 187 SER ALA THR LEU ASP ASN PRO ASP SER ARG THR LEU LEU SEQRES 10 C 187 VAL HIS LYS VAL PHE PRO GLY PHE SER ILE LYS ALA PHE SEQRES 11 C 187 ASP TYR GLU LYS ALA TYR SER LEU GLN ARG PRO ASN ASP SEQRES 12 C 187 HIS GLU PHE MET GLN GLN PRO TRP THR GLY PHE THR VAL SEQRES 13 C 187 GLN ILE SER PHE VAL LYS GLY TRP GLY GLN CYS TYR THR SEQRES 14 C 187 ARG GLN PHE ILE SER SER CYS PRO CYS TRP LEU GLU VAL SEQRES 15 C 187 ILE PHE ASN SER ARG SEQRES 1 D 187 GLY SER PHE THR SER SER GLY SER ASP SER GLN LEU LEU SEQRES 2 D 187 LEU GLU PRO GLY ASP ARG SER HIS TRP CYS VAL VAL ALA SEQRES 3 D 187 TYR TRP GLU GLU LYS THR ARG VAL GLY ARG LEU TYR CYS SEQRES 4 D 187 VAL GLN GLU PRO SER LEU ASP ILE PHE TYR ASP LEU PRO SEQRES 5 D 187 GLN GLY ASN GLY PHE CYS LEU GLY GLN LEU ASN SER ASP SEQRES 6 D 187 ASN LYS SER GLN LEU VAL GLN LYS VAL ARG SER LYS ILE SEQRES 7 D 187 GLY CYS GLY ILE GLN LEU THR ARG GLU VAL ASP GLY VAL SEQRES 8 D 187 TRP VAL TYR ASN ARG SER SER TYR PRO ILE PHE ILE LYS SEQRES 9 D 187 SER ALA THR LEU ASP ASN PRO ASP SER ARG THR LEU LEU SEQRES 10 D 187 VAL HIS LYS VAL PHE PRO GLY PHE SER ILE LYS ALA PHE SEQRES 11 D 187 ASP TYR GLU LYS ALA TYR SER LEU GLN ARG PRO ASN ASP SEQRES 12 D 187 HIS GLU PHE MET GLN GLN PRO TRP THR GLY PHE THR VAL SEQRES 13 D 187 GLN ILE SER PHE VAL LYS GLY TRP GLY GLN CYS TYR THR SEQRES 14 D 187 ARG GLN PHE ILE SER SER CYS PRO CYS TRP LEU GLU VAL SEQRES 15 D 187 ILE PHE ASN SER ARG HET SO4 A 501 5 HET CL A 502 1 HET CL A 503 1 HET CL A 504 1 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 C 501 5 HET SO4 C 502 5 HET SO4 C 503 5 HET SO4 C 504 5 HET CL C 505 1 HET CL C 506 1 HET SO4 D 501 5 HET CL D 502 1 HET CL D 503 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 5 SO4 8(O4 S 2-) FORMUL 6 CL 7(CL 1-) FORMUL 20 HOH *498(H2 O) HELIX 1 AA1 SER A 307 GLY A 318 1 12 HELIX 2 AA2 SER A 344 ASP A 348 5 5 HELIX 3 AA3 ASP A 370 SER A 376 1 7 HELIX 4 AA4 ASP A 382 GLN A 388 1 7 HELIX 5 AA5 PRO A 389 GLY A 392 5 4 HELIX 6 AA6 PHE A 411 CYS A 415 5 5 HELIX 7 AA7 GLY B 299 LEU B 301 5 3 HELIX 8 AA8 SER B 307 GLY B 318 1 12 HELIX 9 AA9 SER B 344 ASP B 348 5 5 HELIX 10 AB1 TYR B 371 SER B 376 1 6 HELIX 11 AB2 ASP B 382 GLN B 388 1 7 HELIX 12 AB3 PRO B 389 GLY B 392 5 4 HELIX 13 AB4 PHE B 411 CYS B 415 5 5 HELIX 14 AB5 ASP C 289 GLY C 293 5 5 HELIX 15 AB6 SER C 307 GLY C 318 1 12 HELIX 16 AB7 SER C 344 ASP C 348 5 5 HELIX 17 AB8 ASP C 370 SER C 376 1 7 HELIX 18 AB9 ASP C 382 GLN C 388 1 7 HELIX 19 AC1 PRO C 389 GLY C 392 5 4 HELIX 20 AC2 PHE C 411 CYS C 415 5 5 HELIX 21 AC3 SER D 307 GLY D 318 1 12 HELIX 22 AC4 SER D 344 ASP D 348 5 5 HELIX 23 AC5 ASP D 370 SER D 376 1 7 HELIX 24 AC6 ASP D 382 GLN D 388 1 7 HELIX 25 AC7 PRO D 389 GLY D 392 5 4 HELIX 26 AC8 PHE D 411 CYS D 415 5 5 SHEET 1 AA1 7 GLY A 256 ASP A 257 0 SHEET 2 AA1 7 THR C 271 VAL C 279 -1 O CYS C 278 N ASP A 257 SHEET 3 AA1 7 CYS C 262 GLU C 268 -1 N GLU C 268 O THR C 271 SHEET 4 AA1 7 TRP C 418 PHE C 423 -1 O TRP C 418 N TRP C 267 SHEET 5 AA1 7 THR C 394 PHE C 399 -1 N VAL C 395 O VAL C 421 SHEET 6 AA1 7 ILE C 340 LYS C 343 -1 N PHE C 341 O SER C 398 SHEET 7 AA1 7 HIS C 358 VAL C 360 -1 O HIS C 358 N ILE C 342 SHEET 1 AA2 6 THR A 271 VAL A 279 0 SHEET 2 AA2 6 CYS A 262 GLU A 268 -1 N GLU A 268 O THR A 271 SHEET 3 AA2 6 TRP A 418 PHE A 423 -1 O TRP A 418 N TRP A 267 SHEET 4 AA2 6 THR A 394 PHE A 399 -1 N VAL A 395 O VAL A 421 SHEET 5 AA2 6 ILE A 340 LYS A 343 -1 N PHE A 341 O SER A 398 SHEET 6 AA2 6 HIS A 358 VAL A 360 -1 O HIS A 358 N ILE A 342 SHEET 1 AA3 5 PHE A 296 CYS A 297 0 SHEET 2 AA3 5 SER A 283 PHE A 287 1 N ASP A 285 O PHE A 296 SHEET 3 AA3 5 ILE A 321 GLU A 326 -1 O LEU A 323 N LEU A 284 SHEET 4 AA3 5 GLY A 329 ASN A 334 -1 O GLY A 329 N GLU A 326 SHEET 5 AA3 5 SER A 365 PHE A 369 -1 O PHE A 369 N VAL A 330 SHEET 1 AA4 4 GLY B 256 ASP B 257 0 SHEET 2 AA4 4 TYR D 277 VAL D 279 -1 O CYS D 278 N ASP B 257 SHEET 3 AA4 4 CYS D 262 GLU D 268 -1 N CYS D 262 O VAL D 279 SHEET 4 AA4 4 THR D 271 ARG D 272 -1 O THR D 271 N GLU D 268 SHEET 1 AA5 7 GLY B 256 ASP B 257 0 SHEET 2 AA5 7 TYR D 277 VAL D 279 -1 O CYS D 278 N ASP B 257 SHEET 3 AA5 7 CYS D 262 GLU D 268 -1 N CYS D 262 O VAL D 279 SHEET 4 AA5 7 TRP D 418 PHE D 423 -1 O ILE D 422 N VAL D 263 SHEET 5 AA5 7 THR D 394 PHE D 399 -1 N VAL D 395 O VAL D 421 SHEET 6 AA5 7 ILE D 340 LYS D 343 -1 N PHE D 341 O SER D 398 SHEET 7 AA5 7 HIS D 358 VAL D 360 -1 O HIS D 358 N ILE D 342 SHEET 1 AA6 6 THR B 271 VAL B 279 0 SHEET 2 AA6 6 CYS B 262 GLU B 268 -1 N TYR B 266 O VAL B 273 SHEET 3 AA6 6 TRP B 418 PHE B 423 -1 O TRP B 418 N TRP B 267 SHEET 4 AA6 6 THR B 394 PHE B 399 -1 N ILE B 397 O LEU B 419 SHEET 5 AA6 6 ILE B 340 LYS B 343 -1 N PHE B 341 O SER B 398 SHEET 6 AA6 6 HIS B 358 VAL B 360 -1 O HIS B 358 N ILE B 342 SHEET 1 AA7 5 PHE B 296 CYS B 297 0 SHEET 2 AA7 5 SER B 283 PHE B 287 1 N ASP B 285 O PHE B 296 SHEET 3 AA7 5 ILE B 321 ARG B 325 -1 O LEU B 323 N LEU B 284 SHEET 4 AA7 5 GLY B 329 ASN B 334 -1 O TRP B 331 N THR B 324 SHEET 5 AA7 5 SER B 365 ASP B 370 -1 O ILE B 366 N VAL B 332 SHEET 1 AA8 5 GLY C 295 CYS C 297 0 SHEET 2 AA8 5 SER C 283 PHE C 287 1 N ASP C 285 O PHE C 296 SHEET 3 AA8 5 ILE C 321 GLU C 326 -1 O ILE C 321 N ILE C 286 SHEET 4 AA8 5 GLY C 329 ASN C 334 -1 O GLY C 329 N GLU C 326 SHEET 5 AA8 5 SER C 365 PHE C 369 -1 O ILE C 366 N VAL C 332 SHEET 1 AA9 5 GLY D 295 CYS D 297 0 SHEET 2 AA9 5 SER D 283 PHE D 287 1 N ASP D 285 O PHE D 296 SHEET 3 AA9 5 ILE D 321 GLU D 326 -1 O ILE D 321 N ILE D 286 SHEET 4 AA9 5 GLY D 329 ASN D 334 -1 O TRP D 331 N THR D 324 SHEET 5 AA9 5 SER D 365 PHE D 369 -1 O ILE D 366 N VAL D 332 SITE 1 AC1 5 GLY A 274 ARG A 275 LEU A 301 HOH A 602 SITE 2 AC1 5 HOH A 633 SITE 1 AC2 2 ARG A 258 HOH A 741 SITE 1 AC3 2 LYS A 359 HOH B 721 SITE 1 AC4 2 GLN A 410 SER A 414 SITE 1 AC5 8 PHE B 341 LYS B 359 TYR B 407 HOH B 619 SITE 2 AC5 8 HOH B 662 HOH B 690 TYR D 407 THR D 408 SITE 1 AC6 7 TYR B 407 THR B 408 ARG B 409 HOH B 631 SITE 2 AC6 7 HOH B 642 LYS D 401 ARG D 409 SITE 1 AC7 4 HOH A 640 GLY C 274 ARG C 275 LEU C 301 SITE 1 AC8 9 LYS A 312 LYS A 316 GLN B 292 SER C 337 SITE 2 AC8 9 TYR C 338 HOH C 641 HOH C 647 HOH C 651 SITE 3 AC8 9 HOH C 678 SITE 1 AC9 5 LYS C 401 THR C 408 ARG C 409 HOH C 601 SITE 2 AC9 5 HOH C 677 SITE 1 AD1 8 SER A 337 TYR A 338 HOH A 650 HOH A 655 SITE 2 AD1 8 PRO C 339 LYS C 359 HOH C 602 HOH C 603 SITE 1 AD2 1 ARG C 258 SITE 1 AD3 2 GLN C 410 SER C 414 SITE 1 AD4 8 LYS B 316 TYR B 338 HOH B 617 THR D 408 SITE 2 AD4 8 ARG D 409 GLN D 410 PHE D 411 SER D 414 SITE 1 AD5 2 ARG D 275 LEU D 301 SITE 1 AD6 3 HOH B 721 ARG D 258 HOH D 657 CRYST1 93.205 117.426 163.239 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010729 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006126 0.00000