HEADER METAL BINDING PROTEIN 19-JUN-20 7CDH TITLE CRYSTAL STRUCTURE OF BETAASPARTYL DIPEPTIDASE FROM THERMOPHILIC TITLE 2 KERATIN DEGRADING FERVIDOBACTERIUM ISLANDICUM-AW-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOASPARTYL DIPEPTIDASE; COMPND 3 CHAIN: X; COMPND 4 EC: 3.4.19.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FERVIDOBACTERIUM ISLANDICUM; SOURCE 3 ORGANISM_TAXID: 2423; SOURCE 4 GENE: NA23_08080; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ASPARTYLDIPEPTIDASE, THERMOPHILIC, FEATHER-DEGRADING BACTERIAL KEYWDS 2 PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.DHANASINGH,J.W.LA,D.W.LEE,S.H.LEE REVDAT 4 03-APR-24 7CDH 1 REMARK REVDAT 3 27-MAR-24 7CDH 1 REMARK REVDAT 2 20-JAN-21 7CDH 1 JRNL REVDAT 1 30-DEC-20 7CDH 0 JRNL AUTH J.W.LA,I.DHANASINGH,H.JANG,S.H.LEE,D.W.LEE JRNL TITL FUNCTIONAL CHARACTERIZATION OF PRIMORDIAL PROTEIN REPAIR JRNL TITL 2 ENZYME M38 METALLO-PEPTIDASE FROM FERVIDOBACTERIUM JRNL TITL 3 ISLANDICUM AW-1. JRNL REF FRONT MOL BIOSCI V. 7 00634 2020 JRNL REFN ESSN 2296-889X JRNL PMID 33392259 JRNL DOI 10.3389/FMOLB.2020.600634 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 18040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 929 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1358 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2927 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2852 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3932 ; 1.680 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6619 ; 1.325 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 7.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;36.497 ;22.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 523 ;17.309 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3181 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 572 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19156 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 22.90 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 24.60 REMARK 200 R MERGE FOR SHELL (I) : 0.82400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 10NW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 1 M REMARK 280 SODIUM FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 71.97000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 71.97000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.78500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 71.97000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 71.97000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 59.78500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 71.97000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 71.97000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 59.78500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 71.97000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 71.97000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 59.78500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 71.97000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.97000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 59.78500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 71.97000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 71.97000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 59.78500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 71.97000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 71.97000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 59.78500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 71.97000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 71.97000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.78500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 49190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 90810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -792.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 621 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 691 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP X 254 REMARK 465 ALA X 255 REMARK 465 GLU X 256 REMARK 465 PHE X 257 REMARK 465 VAL X 258 REMARK 465 ARG X 259 REMARK 465 LEU X 290 REMARK 465 PRO X 291 REMARK 465 LYS X 292 REMARK 465 PHE X 293 REMARK 465 ASP X 294 REMARK 465 ASP X 295 REMARK 465 ASN X 296 REMARK 465 GLY X 297 REMARK 465 ASN X 298 REMARK 465 PHE X 299 REMARK 465 VAL X 300 REMARK 465 GLY X 301 REMARK 465 LEU X 302 REMARK 465 PHE X 387 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU X 233 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN X 7 16.04 80.61 REMARK 500 TYR X 24 -99.52 -102.11 REMARK 500 THR X 36 -58.34 -125.64 REMARK 500 SER X 37 13.58 58.25 REMARK 500 VAL X 38 97.71 -67.36 REMARK 500 PRO X 40 48.18 -79.60 REMARK 500 HIS X 43 143.51 -174.25 REMARK 500 HIS X 61 89.98 -153.43 REMARK 500 SER X 129 -165.61 -165.21 REMARK 500 GLU X 261 -72.02 -81.83 REMARK 500 GLN X 287 -0.64 67.28 REMARK 500 GLU X 319 -8.58 -59.33 REMARK 500 THR X 332 -79.43 -135.75 REMARK 500 GLN X 360 -70.18 -83.01 REMARK 500 LYS X 381 173.13 -56.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 411 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 61 NE2 REMARK 620 2 HIS X 63 NE2 107.0 REMARK 620 3 GLU X 156 OE2 95.0 84.2 REMARK 620 4 ASP X 285 OD1 80.1 84.2 165.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 410 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 156 OE1 REMARK 620 2 HIS X 195 ND1 103.8 REMARK 620 3 HIS X 224 NE2 110.2 90.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG X 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG X 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN X 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN X 411 DBREF1 7CDH X 1 387 UNP A0A1B0VPV0_FERIS DBREF2 7CDH X A0A1B0VPV0 1 387 SEQRES 1 X 387 MET ILE LYS ILE ILE LYS ASN ALA LYS VAL PHE SER PRO SEQRES 2 X 387 GLU TYR ILE GLY LYS LYS ASP VAL ILE PHE TYR HIS LYS SEQRES 3 X 387 VAL ILE HIS VAL GLY GLU GLY VAL ASN THR SER VAL LEU SEQRES 4 X 387 PRO PHE GLU HIS GLU ILE TYR ASP ALA ASN GLY LEU LEU SEQRES 5 X 387 LEU LEU PRO GLY LEU ILE ASP PRO HIS VAL HIS ILE THR SEQRES 6 X 387 GLY GLY GLY GLY GLU GLY GLY PHE GLU THR ARG THR PRO SEQRES 7 X 387 GLU LEU LYS ILE SER ASP CYS ILE ARG SER GLY VAL THR SEQRES 8 X 387 THR VAL VAL GLY CYS LEU GLY THR ASP GLY ILE THR ARG SEQRES 9 X 387 SER LEU GLU ASN LEU TYR ALA LYS ALA LYS SER LEU GLU SEQRES 10 X 387 SER GLU GLY LEU ASN THR PHE ILE TYR THR GLY SER TYR SEQRES 11 X 387 ARG VAL PRO PRO VAL THR PHE THR GLY SER ILE MET ARG SEQRES 12 X 387 ASP ILE VAL LEU ILE ASP LYS VAL ILE GLY VAL GLY GLU SEQRES 13 X 387 ILE ALA ILE SER ASP HIS ARG SER SER GLN PRO THR LEU SEQRES 14 X 387 GLU GLU ILE LEU ARG ILE VAL ALA ASP ILE ARG VAL GLY SEQRES 15 X 387 GLY MET ILE SER GLY LYS ALA GLY ILE VAL ASN PHE HIS SEQRES 16 X 387 VAL GLY SER GLY LYS ARG GLY ILE GLU TYR LEU PHE ASP SEQRES 17 X 387 ILE ILE GLU LYS THR GLU ILE PRO ILE GLN HIS LEU TYR SEQRES 18 X 387 PRO THR HIS MET SER ARG SER ARG LYS LEU PHE GLU GLN SEQRES 19 X 387 GLY LEU GLU PHE ALA LYS ARG GLY GLY THR ILE ASP LEU SEQRES 20 X 387 THR ALA LEU GLN PRO LYS ASP ALA GLU PHE VAL ARG ALA SEQRES 21 X 387 GLU PHE THR THR ILE ASP ALA ILE CYS GLU ALA TYR GLU SEQRES 22 X 387 ASN GLY LEU LEU ASP ASN VAL THR ILE SER SER ASP GLY SEQRES 23 X 387 GLN GLY SER LEU PRO LYS PHE ASP ASP ASN GLY ASN PHE SEQRES 24 X 387 VAL GLY LEU ASP VAL GLY SER VAL SER ALA VAL TRP TYR SEQRES 25 X 387 THR ILE ARG LYS VAL LEU GLU LYS GLY LEU PRO LEU ALA SEQRES 26 X 387 GLU VAL LEU LYS ILE SER THR THR ASN PRO ALA ARG VAL SEQRES 27 X 387 PHE LYS LEU ASN LYS GLY LYS ILE ALA LYS GLY GLN ASP SEQRES 28 X 387 ALA ASP PHE ILE LEU VAL ASP GLU GLN SER PHE GLU ILE SEQRES 29 X 387 VAL SER VAL ILE SER LYS GLY GLU PHE LEU MET LYS ASP SEQRES 30 X 387 GLY VAL MET LYS ASN LEU ASN PHE GLU PHE HET GOL X 401 6 HET GOL X 402 6 HET GOL X 403 6 HET GOL X 404 6 HET GOL X 405 6 HET GOL X 406 6 HET PEG X 407 7 HET GOL X 408 6 HET PEG X 409 7 HET ZN X 410 1 HET ZN X 411 1 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 7(C3 H8 O3) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 11 ZN 2(ZN 2+) FORMUL 13 HOH *195(H2 O) HELIX 1 AA1 GLY X 72 ARG X 76 5 5 HELIX 2 AA2 LYS X 81 ARG X 87 1 7 HELIX 3 AA3 SER X 105 GLU X 119 1 15 HELIX 4 AA4 SER X 140 ILE X 148 1 9 HELIX 5 AA5 THR X 168 GLY X 187 1 20 HELIX 6 AA6 ILE X 203 THR X 213 1 11 HELIX 7 AA7 PRO X 216 GLN X 218 5 3 HELIX 8 AA8 SER X 228 ARG X 241 1 14 HELIX 9 AA9 THR X 263 ASN X 274 1 12 HELIX 10 AB1 LEU X 276 ASP X 278 5 3 HELIX 11 AB2 SER X 308 GLU X 319 1 12 HELIX 12 AB3 PRO X 323 LEU X 328 1 6 HELIX 13 AB4 LYS X 329 SER X 331 5 3 HELIX 14 AB5 THR X 332 LYS X 340 1 9 SHEET 1 AA1 4 VAL X 27 GLY X 31 0 SHEET 2 AA1 4 TYR X 15 PHE X 23 -1 N ASP X 20 O GLY X 31 SHEET 3 AA1 4 ILE X 2 PHE X 11 -1 N ILE X 5 O VAL X 21 SHEET 4 AA1 4 HIS X 43 ASP X 47 1 O TYR X 46 N LYS X 6 SHEET 1 AA2 8 VAL X 27 GLY X 31 0 SHEET 2 AA2 8 TYR X 15 PHE X 23 -1 N ASP X 20 O GLY X 31 SHEET 3 AA2 8 ILE X 2 PHE X 11 -1 N ILE X 5 O VAL X 21 SHEET 4 AA2 8 LEU X 51 PRO X 55 1 O LEU X 53 N PHE X 11 SHEET 5 AA2 8 PHE X 354 ASP X 358 -1 O VAL X 357 N LEU X 52 SHEET 6 AA2 8 ILE X 364 SER X 369 -1 O ILE X 368 N PHE X 354 SHEET 7 AA2 8 GLU X 372 LYS X 376 -1 O MET X 375 N VAL X 367 SHEET 8 AA2 8 VAL X 379 MET X 380 -1 O VAL X 379 N LYS X 376 SHEET 1 AA3 6 LEU X 57 VAL X 62 0 SHEET 2 AA3 6 VAL X 90 GLY X 95 1 O THR X 92 N ASP X 59 SHEET 3 AA3 6 ASN X 122 THR X 127 1 O PHE X 124 N GLY X 95 SHEET 4 AA3 6 VAL X 151 ILE X 159 1 O ILE X 152 N ILE X 125 SHEET 5 AA3 6 ILE X 191 VAL X 196 1 O HIS X 195 N ILE X 159 SHEET 6 AA3 6 LEU X 220 THR X 223 1 O THR X 223 N PHE X 194 SHEET 1 AA4 2 ILE X 245 THR X 248 0 SHEET 2 AA4 2 VAL X 280 SER X 283 1 O SER X 283 N LEU X 247 LINK NE2 HIS X 61 ZN ZN X 411 1555 1555 2.10 LINK NE2 HIS X 63 ZN ZN X 411 1555 1555 2.33 LINK OE1 GLU X 156 ZN ZN X 410 1555 1555 2.25 LINK OE2 GLU X 156 ZN ZN X 411 1555 1555 2.05 LINK ND1 HIS X 195 ZN ZN X 410 1555 1555 2.12 LINK NE2 HIS X 224 ZN ZN X 410 1555 1555 2.33 LINK OD1 ASP X 285 ZN ZN X 411 1555 1555 2.37 CISPEP 1 SER X 12 PRO X 13 0 13.82 CISPEP 2 VAL X 132 PRO X 133 0 2.66 CISPEP 3 GLY X 155 GLU X 156 0 -6.72 SITE 1 AC1 4 LYS X 188 ALA X 189 PHE X 339 LYS X 340 SITE 1 AC2 6 GLY X 199 LYS X 200 LYS X 230 LEU X 231 SITE 2 AC2 6 GLN X 234 HOH X 520 SITE 1 AC3 2 ARG X 315 GLU X 319 SITE 1 AC4 2 LYS X 316 GLU X 319 SITE 1 AC5 3 LEU X 341 ASN X 342 HOH X 608 SITE 1 AC6 6 GLY X 199 LYS X 200 ARG X 201 GLU X 211 SITE 2 AC6 6 THR X 213 GLU X 214 SITE 1 AC7 5 GLY X 321 LEU X 324 PEG X 409 HOH X 508 SITE 2 AC7 5 HOH X 553 SITE 1 AC8 3 THR X 168 LEU X 169 GLU X 170 SITE 1 AC9 9 PHE X 11 TYR X 15 TYR X 272 PRO X 323 SITE 2 AC9 9 LEU X 324 ALA X 325 PEG X 407 HOH X 535 SITE 3 AC9 9 HOH X 621 SITE 1 AD1 6 TYR X 130 GLU X 156 HIS X 195 HIS X 224 SITE 2 AD1 6 ZN X 411 HOH X 516 SITE 1 AD2 6 HIS X 61 HIS X 63 GLU X 156 ASP X 285 SITE 2 AD2 6 ZN X 410 HOH X 516 CRYST1 143.940 143.940 119.570 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008363 0.00000