HEADER BIOSYNTHETIC PROTEIN 24-JUN-20 7CER TITLE CRYSTAL STRUCTURE OF D-CYCLOSERINE-BOUND FORM OF CYSTEINE DESULFURASE TITLE 2 SUFS H121A FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE SUFS; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SUFS, CSD, YURW, BSU32690; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CYSTEINE DESULFURASE, PLP-DEPENDENT ENZYME, CYSTEINE METABOLISM, KEYWDS 2 CYCLOSERINE, INHIBITOR, FE-S CLUSTER BIOSYNTHESIS, BIOSYNTHETIC KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.NAKAMURA,Y.TAKAHASHI,T.FUJISHIRO REVDAT 3 29-NOV-23 7CER 1 REMARK REVDAT 2 27-APR-22 7CER 1 JRNL REVDAT 1 30-JUN-21 7CER 0 JRNL AUTH R.NAKAMURA,S.OGAWA,Y.TAKAHASHI,T.FUJISHIRO JRNL TITL CYCLOSERINE ENANTIOMERS INHIBIT PLP-DEPENDENT CYSTEINE JRNL TITL 2 DESULFURASE SUFS VIA DISTINCT MECHANISMS. JRNL REF FEBS J. 2022 JRNL REFN ISSN 1742-464X JRNL PMID 35395703 JRNL DOI 10.1111/FEBS.16455 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5100 - 4.9600 1.00 2892 153 0.1668 0.1653 REMARK 3 2 4.9500 - 3.9300 1.00 2779 146 0.1489 0.1662 REMARK 3 3 3.9300 - 3.4400 1.00 2729 144 0.1703 0.2288 REMARK 3 4 3.4400 - 3.1200 1.00 2744 144 0.1905 0.2704 REMARK 3 5 3.1200 - 2.9000 1.00 2703 142 0.1924 0.2807 REMARK 3 6 2.9000 - 2.7300 1.00 2692 142 0.2033 0.2717 REMARK 3 7 2.7300 - 2.5900 1.00 2703 142 0.1978 0.2575 REMARK 3 8 2.5900 - 2.4800 1.00 2701 142 0.1905 0.2475 REMARK 3 9 2.4800 - 2.3800 1.00 2685 142 0.2047 0.2602 REMARK 3 10 2.3800 - 2.3000 1.00 2695 142 0.2187 0.2640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2070 16.0246 -13.4967 REMARK 3 T TENSOR REMARK 3 T11: 0.3765 T22: 0.3328 REMARK 3 T33: 0.3406 T12: -0.1366 REMARK 3 T13: 0.0187 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 5.3377 L22: 7.9250 REMARK 3 L33: 2.9431 L12: -0.1530 REMARK 3 L13: 0.6703 L23: 1.3211 REMARK 3 S TENSOR REMARK 3 S11: 0.1284 S12: -0.3144 S13: 0.4010 REMARK 3 S21: 0.3290 S22: -0.0551 S23: -0.7756 REMARK 3 S31: -0.5290 S32: 0.4685 S33: -0.0801 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1906 -8.2944 -17.4559 REMARK 3 T TENSOR REMARK 3 T11: 0.3926 T22: 0.3928 REMARK 3 T33: 0.2371 T12: 0.0468 REMARK 3 T13: -0.0477 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.7648 L22: 6.7619 REMARK 3 L33: 5.1041 L12: -1.7225 REMARK 3 L13: 0.1012 L23: 2.1085 REMARK 3 S TENSOR REMARK 3 S11: 0.2541 S12: -0.0778 S13: -0.3605 REMARK 3 S21: 0.3905 S22: -0.1323 S23: -0.2441 REMARK 3 S31: 0.6772 S32: 0.0801 S33: -0.0857 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.4270 8.4603 -6.2450 REMARK 3 T TENSOR REMARK 3 T11: 0.4010 T22: 0.3666 REMARK 3 T33: 0.4173 T12: -0.0699 REMARK 3 T13: 0.1432 T23: -0.0866 REMARK 3 L TENSOR REMARK 3 L11: 2.6708 L22: 3.2882 REMARK 3 L33: 1.9218 L12: -1.2351 REMARK 3 L13: -0.2226 L23: 0.0935 REMARK 3 S TENSOR REMARK 3 S11: 0.1381 S12: -0.3403 S13: 0.1551 REMARK 3 S21: 0.4448 S22: -0.1426 S23: 0.6312 REMARK 3 S31: -0.2224 S32: -0.3642 S33: 0.0097 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.1796 -6.3835 -13.9272 REMARK 3 T TENSOR REMARK 3 T11: 0.3297 T22: 0.3109 REMARK 3 T33: 0.3838 T12: -0.0569 REMARK 3 T13: 0.0218 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.6444 L22: 3.8161 REMARK 3 L33: 2.8350 L12: 1.0503 REMARK 3 L13: 0.7940 L23: 1.3467 REMARK 3 S TENSOR REMARK 3 S11: 0.1401 S12: -0.0549 S13: -0.2411 REMARK 3 S21: 0.2676 S22: -0.1519 S23: 0.4861 REMARK 3 S31: 0.3079 S32: -0.3598 S33: -0.0028 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.3883 12.8239 -6.7356 REMARK 3 T TENSOR REMARK 3 T11: 0.3741 T22: 0.3565 REMARK 3 T33: 0.2274 T12: -0.0521 REMARK 3 T13: 0.0923 T23: -0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.3470 L22: 7.2338 REMARK 3 L33: 1.6482 L12: 1.5275 REMARK 3 L13: 0.7016 L23: 1.5663 REMARK 3 S TENSOR REMARK 3 S11: 0.2008 S12: -0.3115 S13: 0.3102 REMARK 3 S21: 0.6943 S22: -0.3011 S23: 0.3221 REMARK 3 S31: -0.0648 S32: 0.0061 S33: 0.0996 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.6487 29.2953 -19.7333 REMARK 3 T TENSOR REMARK 3 T11: 0.6925 T22: 0.3577 REMARK 3 T33: 0.4677 T12: -0.0997 REMARK 3 T13: -0.0363 T23: -0.0717 REMARK 3 L TENSOR REMARK 3 L11: 7.2583 L22: 2.6644 REMARK 3 L33: 7.1319 L12: -0.4755 REMARK 3 L13: -4.2872 L23: -3.1327 REMARK 3 S TENSOR REMARK 3 S11: -0.3323 S12: 0.6088 S13: 0.0560 REMARK 3 S21: -0.5164 S22: 0.1978 S23: 0.2807 REMARK 3 S31: -0.3049 S32: -0.4936 S33: 0.1542 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 363 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5202 33.3310 -17.2838 REMARK 3 T TENSOR REMARK 3 T11: 0.7779 T22: 0.4178 REMARK 3 T33: 0.6037 T12: -0.1198 REMARK 3 T13: -0.0065 T23: -0.0574 REMARK 3 L TENSOR REMARK 3 L11: 4.9766 L22: 3.0690 REMARK 3 L33: 1.8889 L12: -0.0709 REMARK 3 L13: 0.2747 L23: 0.0369 REMARK 3 S TENSOR REMARK 3 S11: -0.2930 S12: 0.4572 S13: 1.0869 REMARK 3 S21: -0.2101 S22: 0.1127 S23: 0.0211 REMARK 3 S31: -0.8717 S32: 0.1320 S33: 0.1265 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1300017466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28762 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.794 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.34 REMARK 200 R MERGE FOR SHELL (I) : 0.65500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZS9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 50 MM LITHIUM SULFATE, REMARK 280 50%(V/V) PEG200, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.73333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.46667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.46667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.73333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -42.73333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 47 -37.91 -131.77 REMARK 500 TYR A 48 31.15 -146.68 REMARK 500 HIS A 53 50.57 72.39 REMARK 500 ARG A 54 -38.44 -144.73 REMARK 500 ILE A 116 -168.65 -125.53 REMARK 500 ILE A 125 -58.30 -134.37 REMARK 500 GLU A 252 -26.86 73.28 REMARK 500 ASP A 255 -69.86 -105.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 503 DBREF 7CER A 1 406 UNP O32164 SUFS_BACSU 1 406 SEQADV 7CER MET A -2 UNP O32164 INITIATING METHIONINE SEQADV 7CER GLY A -1 UNP O32164 EXPRESSION TAG SEQADV 7CER HIS A 0 UNP O32164 EXPRESSION TAG SEQADV 7CER ALA A 121 UNP O32164 HIS 121 ENGINEERED MUTATION SEQADV 7CER VAL A 407 UNP O32164 EXPRESSION TAG SEQADV 7CER ASP A 408 UNP O32164 EXPRESSION TAG SEQADV 7CER LEU A 409 UNP O32164 EXPRESSION TAG SEQADV 7CER GLU A 410 UNP O32164 EXPRESSION TAG SEQADV 7CER HIS A 411 UNP O32164 EXPRESSION TAG SEQADV 7CER HIS A 412 UNP O32164 EXPRESSION TAG SEQADV 7CER HIS A 413 UNP O32164 EXPRESSION TAG SEQADV 7CER HIS A 414 UNP O32164 EXPRESSION TAG SEQADV 7CER HIS A 415 UNP O32164 EXPRESSION TAG SEQADV 7CER HIS A 416 UNP O32164 EXPRESSION TAG SEQRES 1 A 419 MET GLY HIS MET ASN ILE THR ASP ILE ARG GLU GLN PHE SEQRES 2 A 419 PRO ILE LEU HIS GLN GLN VAL ASN GLY HIS ASP LEU VAL SEQRES 3 A 419 TYR LEU ASP SER ALA ALA THR SER GLN LYS PRO ARG ALA SEQRES 4 A 419 VAL ILE GLU THR LEU ASP LYS TYR TYR ASN GLN TYR ASN SEQRES 5 A 419 SER ASN VAL HIS ARG GLY VAL HIS THR LEU GLY THR ARG SEQRES 6 A 419 ALA THR ASP GLY TYR GLU GLY ALA ARG GLU LYS VAL ARG SEQRES 7 A 419 LYS PHE ILE ASN ALA LYS SER MET ALA GLU ILE ILE PHE SEQRES 8 A 419 THR LYS GLY THR THR THR SER LEU ASN MET VAL ALA LEU SEQRES 9 A 419 SER TYR ALA ARG ALA ASN LEU LYS PRO GLY ASP GLU VAL SEQRES 10 A 419 VAL ILE THR TYR MET GLU ALA HIS ALA ASN ILE ILE PRO SEQRES 11 A 419 TRP GLN GLN ALA VAL LYS ALA THR GLY ALA THR LEU LYS SEQRES 12 A 419 TYR ILE PRO LEU GLN GLU ASP GLY THR ILE SER LEU GLU SEQRES 13 A 419 ASP VAL ARG GLU THR VAL THR SER ASN THR LYS ILE VAL SEQRES 14 A 419 ALA VAL SER HIS VAL SER ASN VAL LEU GLY THR VAL ASN SEQRES 15 A 419 PRO ILE LYS GLU MET ALA LYS ILE ALA HIS ASP ASN GLY SEQRES 16 A 419 ALA VAL ILE VAL VAL ASP GLY ALA GLN SER THR PRO HIS SEQRES 17 A 419 MET LYS ILE ASP VAL GLN ASP LEU ASP CYS ASP PHE PHE SEQRES 18 A 419 ALA LEU SER SER HIS LYS MET CYS GLY PRO THR GLY VAL SEQRES 19 A 419 GLY VAL LEU TYR GLY LYS LYS ALA LEU LEU GLU ASN MET SEQRES 20 A 419 GLU PRO ALA GLU PHE GLY GLY GLU MET ILE ASP PHE VAL SEQRES 21 A 419 GLY LEU TYR GLU SER THR TRP LYS GLU LEU PRO TRP LYS SEQRES 22 A 419 PHE GLU ALA GLY THR PRO ILE ILE ALA GLY ALA ILE GLY SEQRES 23 A 419 LEU GLY ALA ALA ILE ASP PHE LEU GLU GLU ILE GLY LEU SEQRES 24 A 419 ASP GLU ILE SER ARG HIS GLU HIS LYS LEU ALA ALA TYR SEQRES 25 A 419 ALA LEU GLU ARG PHE ARG GLN LEU ASP GLY VAL THR VAL SEQRES 26 A 419 TYR GLY PRO GLU GLU ARG ALA GLY LEU VAL THR PHE ASN SEQRES 27 A 419 LEU ASP ASP VAL HIS PRO HIS ASP VAL ALA THR VAL LEU SEQRES 28 A 419 ASP ALA GLU GLY ILE ALA VAL ARG ALA GLY HIS HIS CYS SEQRES 29 A 419 ALA GLN PRO LEU MET LYS TRP LEU ASP VAL THR ALA THR SEQRES 30 A 419 ALA ARG ALA SER PHE TYR LEU TYR ASN THR GLU GLU GLU SEQRES 31 A 419 ILE ASP LYS LEU VAL GLU ALA LEU GLN LYS THR LYS GLU SEQRES 32 A 419 TYR PHE THR ASN VAL PHE VAL ASP LEU GLU HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS HET DCS A 501 22 HET PGE A 502 10 HET PEG A 503 7 HETNAM DCS D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 DCS YLMETHYL]-N,O-CYCLOSERYLAMIDE HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN DCS D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE FORMUL 2 DCS C11 H16 N3 O7 P FORMUL 3 PGE C6 H14 O4 FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *137(H2 O) HELIX 1 AA1 ASN A 2 GLU A 8 1 7 HELIX 2 AA2 GLN A 9 HIS A 14 5 6 HELIX 3 AA3 PRO A 34 TYR A 48 1 15 HELIX 4 AA4 HIS A 57 ILE A 78 1 22 HELIX 5 AA5 SER A 82 ALA A 84 5 3 HELIX 6 AA6 GLY A 91 TYR A 103 1 13 HELIX 7 AA7 TYR A 103 LEU A 108 1 6 HELIX 8 AA8 ALA A 121 ASN A 124 5 4 HELIX 9 AA9 ILE A 125 GLY A 136 1 12 HELIX 10 AB1 SER A 151 VAL A 159 1 9 HELIX 11 AB2 PRO A 180 ASN A 191 1 12 HELIX 12 AB3 ASP A 209 ASP A 214 1 6 HELIX 13 AB4 LYS A 237 MET A 244 1 8 HELIX 14 AB5 PRO A 268 GLU A 272 5 5 HELIX 15 AB6 ILE A 277 GLY A 295 1 19 HELIX 16 AB7 GLY A 295 GLN A 316 1 22 HELIX 17 AB8 HIS A 340 GLU A 351 1 12 HELIX 18 AB9 ALA A 362 LEU A 369 1 8 HELIX 19 AC1 THR A 384 LEU A 409 1 26 SHEET 1 AA1 2 GLN A 16 VAL A 17 0 SHEET 2 AA1 2 HIS A 20 ASP A 21 -1 O HIS A 20 N VAL A 17 SHEET 1 AA2 2 VAL A 23 TYR A 24 0 SHEET 2 AA2 2 ILE A 353 ALA A 354 1 O ALA A 354 N VAL A 23 SHEET 1 AA3 7 ILE A 86 THR A 89 0 SHEET 2 AA3 7 GLY A 232 GLY A 236 -1 O GLY A 232 N THR A 89 SHEET 3 AA3 7 PHE A 217 SER A 221 -1 N PHE A 218 O TYR A 235 SHEET 4 AA3 7 VAL A 194 ASP A 198 1 N VAL A 197 O ALA A 219 SHEET 5 AA3 7 THR A 163 SER A 169 1 N VAL A 168 O VAL A 196 SHEET 6 AA3 7 GLU A 113 THR A 117 1 N GLU A 113 O LYS A 164 SHEET 7 AA3 7 THR A 138 ILE A 142 1 O ILE A 142 N ILE A 116 SHEET 1 AA4 2 ILE A 254 VAL A 257 0 SHEET 2 AA4 2 SER A 262 TRP A 264 -1 O THR A 263 N ASP A 255 SHEET 1 AA5 4 VAL A 320 TYR A 323 0 SHEET 2 AA5 4 LEU A 331 LEU A 336 -1 O THR A 333 N TYR A 323 SHEET 3 AA5 4 THR A 374 SER A 378 -1 O ALA A 375 N PHE A 334 SHEET 4 AA5 4 ARG A 356 GLY A 358 -1 N ARG A 356 O ARG A 376 CISPEP 1 LEU A 267 PRO A 268 0 -0.08 SITE 1 AC1 16 ALA A 28 ASN A 51 THR A 92 THR A 93 SITE 2 AC1 16 ASN A 173 ASP A 198 ALA A 200 SER A 221 SITE 3 AC1 16 HIS A 223 LYS A 224 GLY A 274 THR A 275 SITE 4 AC1 16 ARG A 356 ARG A 376 HOH A 603 HOH A 723 SITE 1 AC2 4 HIS A 53 GLU A 252 LYS A 265 TRP A 269 SITE 1 AC3 4 THR A 4 ARG A 7 THR A 384 GLU A 386 CRYST1 92.500 92.500 128.200 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010811 0.006242 0.000000 0.00000 SCALE2 0.000000 0.012483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007800 0.00000