HEADER STRUCTURAL PROTEIN 06-JUL-20 7CHK TITLE CRYO-EM STRUCTURE OF APPLE LATENT SPHERICAL VIRUS (ALSV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP20 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: VP24 PROTEIN; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: VP25 PROTEIN; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APPLE LATENT SPHERICAL VIRUS; SOURCE 3 ORGANISM_TAXID: 101688; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: APPLE LATENT SPHERICAL VIRUS; SOURCE 6 ORGANISM_TAXID: 101688; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: APPLE LATENT SPHERICAL VIRUS; SOURCE 9 ORGANISM_TAXID: 101688 KEYWDS CHERAVIRUS, CAPSID STABILIZATION, GENOME RELEASE, SINGLE PARTICLE KEYWDS 2 CRYO-EM, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR H.NAITOW,T.HAMAGUCHI,S.MAKI-YONEKURA,M.ISOGAI,N.YOSHIKAWA,K.YONEKURA REVDAT 2 27-MAR-24 7CHK 1 REMARK REVDAT 1 04-NOV-20 7CHK 0 JRNL AUTH H.NAITOW,T.HAMAGUCHI,S.MAKI-YONEKURA,M.ISOGAI,N.YOSHIKAWA, JRNL AUTH 2 K.YONEKURA JRNL TITL APPLE LATENT SPHERICAL VIRUS STRUCTURE WITH STABLE CAPSID JRNL TITL 2 FRAME SUPPORTS QUASI-STABLE PROTRUSIONS EXPEDITING GENOME JRNL TITL 3 RELEASE. JRNL REF COMMUN BIOL V. 3 488 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 32887929 JRNL DOI 10.1038/S42003-020-01217-4 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : COOT, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.870 REMARK 3 NUMBER OF PARTICLES : 8018 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7CHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017332. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : APPLE LATENT SPHERICAL VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : ALSV WAS PURIFIED AND ISOLATED REMARK 245 FROM INFECTED CHENOPODIUM QUINOA LEAF. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL CRYO ARM 300 REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 850.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 40000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 0.309017 121.25129 REMARK 350 BIOMT2 2 0.500000 0.309017 -0.809017 317.44000 REMARK 350 BIOMT3 2 0.309017 0.809017 0.500000 -196.18871 REMARK 350 BIOMT1 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 3 0.309017 -0.809017 -0.500000 634.88000 REMARK 350 BIOMT3 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 4 0.500000 0.309017 0.809017 -196.18871 REMARK 350 BIOMT2 4 -0.309017 -0.809017 0.500000 513.62871 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 317.44000 REMARK 350 BIOMT1 5 0.809017 0.500000 0.309017 -196.18871 REMARK 350 BIOMT2 5 -0.500000 0.309017 0.809017 121.25129 REMARK 350 BIOMT3 5 0.309017 -0.809017 0.500000 317.44000 REMARK 350 BIOMT1 6 -0.500000 0.309017 0.809017 121.25129 REMARK 350 BIOMT2 6 0.309017 -0.809017 0.500000 317.44000 REMARK 350 BIOMT3 6 0.809017 0.500000 0.309017 -196.18871 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.500000 0.309017 -0.809017 317.44000 REMARK 350 BIOMT2 8 0.309017 0.809017 0.500000 -196.18871 REMARK 350 BIOMT3 8 0.809017 -0.500000 0.309017 121.25129 REMARK 350 BIOMT1 9 0.309017 -0.809017 -0.500000 634.88000 REMARK 350 BIOMT2 9 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 513.62871 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 317.44000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 -196.18870 REMARK 350 BIOMT1 11 0.309017 -0.809017 -0.500000 634.87999 REMARK 350 BIOMT2 11 -0.809017 -0.500000 0.309017 634.88001 REMARK 350 BIOMT3 11 -0.500000 0.309017 -0.809017 634.88001 REMARK 350 BIOMT1 12 -0.309017 -0.809017 0.500000 513.62870 REMARK 350 BIOMT2 12 -0.809017 0.500000 0.309017 317.44001 REMARK 350 BIOMT3 12 -0.500000 -0.309017 -0.809017 831.06872 REMARK 350 BIOMT1 13 -0.500000 0.309017 0.809017 121.25128 REMARK 350 BIOMT2 13 -0.309017 0.809017 -0.500000 317.44001 REMARK 350 BIOMT3 13 -0.809017 -0.500000 -0.309017 831.06871 REMARK 350 BIOMT1 14 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 14 0.000000 0.000000 -1.000000 634.88001 REMARK 350 BIOMT3 14 -1.000000 0.000000 0.000000 634.88000 REMARK 350 BIOMT1 15 0.500000 0.309017 -0.809017 317.44000 REMARK 350 BIOMT2 15 -0.309017 -0.809017 -0.500000 831.06872 REMARK 350 BIOMT3 15 -0.809017 0.500000 -0.309017 513.62871 REMARK 350 BIOMT1 16 -0.809017 0.500000 -0.309017 513.62870 REMARK 350 BIOMT2 16 0.500000 0.309017 -0.809017 317.44001 REMARK 350 BIOMT3 16 -0.309017 -0.809017 -0.500000 831.06872 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 634.87999 REMARK 350 BIOMT2 17 0.309017 -0.809017 -0.500000 634.88001 REMARK 350 BIOMT3 17 -0.809017 -0.500000 0.309017 634.88001 REMARK 350 BIOMT1 18 -0.500000 -0.309017 -0.809017 831.06871 REMARK 350 BIOMT2 18 -0.309017 -0.809017 0.500000 513.62872 REMARK 350 BIOMT3 18 -0.809017 0.500000 0.309017 317.44001 REMARK 350 BIOMT1 19 -0.809017 -0.500000 -0.309017 831.06871 REMARK 350 BIOMT2 19 -0.500000 0.309017 0.809017 121.25129 REMARK 350 BIOMT3 19 -0.309017 0.809017 -0.500000 317.44001 REMARK 350 BIOMT1 20 -1.000000 0.000000 0.000000 634.87999 REMARK 350 BIOMT2 20 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 0.000000 -1.000000 634.88001 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 634.88000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 634.88000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 -0.309017 0.809017 317.44000 REMARK 350 BIOMT2 22 -0.309017 -0.809017 -0.500000 831.06872 REMARK 350 BIOMT3 22 0.809017 -0.500000 0.309017 121.25130 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 634.88000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 -0.500000 121.25129 REMARK 350 BIOMT2 24 -0.809017 0.500000 0.309017 317.44000 REMARK 350 BIOMT3 24 0.500000 0.309017 0.809017 -196.18871 REMARK 350 BIOMT1 25 0.500000 -0.309017 -0.809017 513.62871 REMARK 350 BIOMT2 25 -0.309017 0.809017 -0.500000 317.44000 REMARK 350 BIOMT3 25 0.809017 0.500000 0.309017 -196.18870 REMARK 350 BIOMT1 26 -0.309017 0.809017 -0.500000 317.44000 REMARK 350 BIOMT2 26 -0.809017 -0.500000 -0.309017 831.06872 REMARK 350 BIOMT3 26 -0.500000 0.309017 0.809017 121.25130 REMARK 350 BIOMT1 27 0.000000 0.000000 -1.000000 634.88000 REMARK 350 BIOMT2 27 -1.000000 0.000000 0.000000 634.88001 REMARK 350 BIOMT3 27 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 -0.309017 -0.809017 -0.500000 831.06871 REMARK 350 BIOMT2 28 -0.809017 0.500000 -0.309017 513.62872 REMARK 350 BIOMT3 28 0.500000 0.309017 -0.809017 317.44001 REMARK 350 BIOMT1 29 -0.809017 -0.500000 0.309017 634.87999 REMARK 350 BIOMT2 29 -0.500000 0.309017 -0.809017 634.88001 REMARK 350 BIOMT3 29 0.309017 -0.809017 -0.500000 634.88001 REMARK 350 BIOMT1 30 -0.809017 0.500000 0.309017 317.44000 REMARK 350 BIOMT2 30 -0.500000 -0.309017 -0.809017 831.06872 REMARK 350 BIOMT3 30 -0.309017 -0.809017 0.500000 513.62872 REMARK 350 BIOMT1 31 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 31 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 31 0.309017 -0.809017 -0.500000 634.88000 REMARK 350 BIOMT1 32 0.809017 -0.500000 -0.309017 317.43999 REMARK 350 BIOMT2 32 0.500000 0.309017 0.809017 -196.18871 REMARK 350 BIOMT3 32 -0.309017 -0.809017 0.500000 513.62871 REMARK 350 BIOMT1 33 0.309017 -0.809017 0.500000 317.44000 REMARK 350 BIOMT2 33 0.809017 0.500000 0.309017 -196.18871 REMARK 350 BIOMT3 33 -0.500000 0.309017 0.809017 121.25129 REMARK 350 BIOMT1 34 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 34 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 34 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 35 0.309017 0.809017 0.500000 -196.18871 REMARK 350 BIOMT2 35 0.809017 -0.500000 0.309017 121.25129 REMARK 350 BIOMT3 35 0.500000 0.309017 -0.809017 317.44000 REMARK 350 BIOMT1 36 -0.500000 -0.309017 0.809017 317.43999 REMARK 350 BIOMT2 36 0.309017 0.809017 0.500000 -196.18871 REMARK 350 BIOMT3 36 -0.809017 0.500000 -0.309017 513.62871 REMARK 350 BIOMT1 37 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 37 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 37 -0.500000 0.309017 -0.809017 634.88000 REMARK 350 BIOMT1 38 0.309017 0.809017 -0.500000 121.25128 REMARK 350 BIOMT2 38 0.809017 -0.500000 -0.309017 317.44001 REMARK 350 BIOMT3 38 -0.500000 -0.309017 -0.809017 831.06871 REMARK 350 BIOMT1 39 0.500000 -0.309017 -0.809017 513.62870 REMARK 350 BIOMT2 39 0.309017 -0.809017 0.500000 317.44001 REMARK 350 BIOMT3 39 -0.809017 -0.500000 -0.309017 831.06872 REMARK 350 BIOMT1 40 0.000000 -1.000000 0.000000 634.87999 REMARK 350 BIOMT2 40 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 40 -1.000000 0.000000 0.000000 634.88001 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 634.88001 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 634.88000 REMARK 350 BIOMT1 42 0.309017 0.809017 0.500000 -196.18871 REMARK 350 BIOMT2 42 -0.809017 0.500000 -0.309017 513.62871 REMARK 350 BIOMT3 42 -0.500000 -0.309017 0.809017 317.44000 REMARK 350 BIOMT1 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 43 -0.500000 0.309017 -0.809017 634.88000 REMARK 350 BIOMT3 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.500000 -0.309017 317.44000 REMARK 350 BIOMT2 44 -0.500000 -0.309017 -0.809017 831.06872 REMARK 350 BIOMT3 44 0.309017 0.809017 -0.500000 121.25130 REMARK 350 BIOMT1 45 0.309017 -0.809017 0.500000 317.44000 REMARK 350 BIOMT2 45 -0.809017 -0.500000 -0.309017 831.06872 REMARK 350 BIOMT3 45 0.500000 -0.309017 -0.809017 513.62871 REMARK 350 BIOMT1 46 0.809017 0.500000 0.309017 -196.18871 REMARK 350 BIOMT2 46 0.500000 -0.309017 -0.809017 513.62871 REMARK 350 BIOMT3 46 -0.309017 0.809017 -0.500000 317.44000 REMARK 350 BIOMT1 47 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 47 0.000000 -1.000000 0.000000 634.88001 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 634.88000 REMARK 350 BIOMT1 48 0.809017 -0.500000 0.309017 121.25128 REMARK 350 BIOMT2 48 -0.500000 -0.309017 0.809017 317.44001 REMARK 350 BIOMT3 48 -0.309017 -0.809017 -0.500000 831.06871 REMARK 350 BIOMT1 49 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 -0.809017 -0.500000 0.309017 634.88000 REMARK 350 BIOMT1 50 0.500000 0.309017 0.809017 -196.18871 REMARK 350 BIOMT2 50 0.309017 0.809017 -0.500000 121.25129 REMARK 350 BIOMT3 50 -0.809017 0.500000 0.309017 317.44000 REMARK 350 BIOMT1 51 -0.500000 0.309017 -0.809017 634.88000 REMARK 350 BIOMT2 51 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 51 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 52 -0.500000 -0.309017 -0.809017 831.06871 REMARK 350 BIOMT2 52 0.309017 0.809017 -0.500000 121.25129 REMARK 350 BIOMT3 52 0.809017 -0.500000 -0.309017 317.44001 REMARK 350 BIOMT1 53 -0.809017 -0.500000 -0.309017 831.06871 REMARK 350 BIOMT2 53 0.500000 -0.309017 -0.809017 513.62872 REMARK 350 BIOMT3 53 0.309017 -0.809017 0.500000 317.44001 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 634.88000 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 634.88001 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 -0.309017 513.62871 REMARK 350 BIOMT2 55 -0.500000 -0.309017 0.809017 317.44000 REMARK 350 BIOMT3 55 0.309017 0.809017 0.500000 -196.18870 REMARK 350 BIOMT1 56 -0.309017 -0.809017 -0.500000 831.06871 REMARK 350 BIOMT2 56 0.809017 -0.500000 0.309017 121.25129 REMARK 350 BIOMT3 56 -0.500000 -0.309017 0.809017 317.44001 REMARK 350 BIOMT1 57 -0.809017 -0.500000 0.309017 634.88000 REMARK 350 BIOMT2 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 57 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 0.500000 0.309017 317.44000 REMARK 350 BIOMT2 58 0.500000 0.309017 0.809017 -196.18871 REMARK 350 BIOMT3 58 0.309017 0.809017 -0.500000 121.25129 REMARK 350 BIOMT1 59 -0.309017 0.809017 -0.500000 317.43999 REMARK 350 BIOMT2 59 0.809017 0.500000 0.309017 -196.18871 REMARK 350 BIOMT3 59 0.500000 -0.309017 -0.809017 513.62871 REMARK 350 BIOMT1 60 0.000000 0.000000 -1.000000 634.87999 REMARK 350 BIOMT2 60 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 60 0.000000 -1.000000 0.000000 634.88001 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 169 REMARK 465 ILE A 170 REMARK 465 GLY A 171 REMARK 465 PRO A 172 REMARK 465 LEU A 173 REMARK 465 VAL A 174 REMARK 465 GLY A 175 REMARK 465 GLU A 176 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 PRO B 4 REMARK 465 PHE B 5 REMARK 465 THR B 41 REMARK 465 LEU B 42 REMARK 465 GLN B 43 REMARK 465 GLY B 44 REMARK 465 GLU B 45 REMARK 465 ALA B 46 REMARK 465 LEU B 47 REMARK 465 VAL B 48 REMARK 465 PHE B 49 REMARK 465 ASN B 50 REMARK 465 ASP B 51 REMARK 465 ALA B 52 REMARK 465 PHE B 53 REMARK 465 VAL B 54 REMARK 465 SER B 55 REMARK 465 ASN B 100 REMARK 465 ASN B 101 REMARK 465 GLU B 102 REMARK 465 SER B 103 REMARK 465 LEU B 104 REMARK 465 PHE B 105 REMARK 465 GLY B 106 REMARK 465 PHE B 107 REMARK 465 ASN B 108 REMARK 465 ASN B 109 REMARK 465 LYS B 110 REMARK 465 PRO B 111 REMARK 465 VAL B 112 REMARK 465 GLY B 113 REMARK 465 ASP B 114 REMARK 465 THR B 115 REMARK 465 GLY B 116 REMARK 465 LYS B 146 REMARK 465 PHE B 147 REMARK 465 ASP B 148 REMARK 465 TYR B 149 REMARK 465 LEU B 150 REMARK 465 ASN B 151 REMARK 465 TYR B 191 REMARK 465 THR B 192 REMARK 465 GLY C 1 REMARK 465 GLN C 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 3 OG1 THR C 5 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 12 57.01 39.57 REMARK 500 CYS A 49 42.90 -140.07 REMARK 500 ASP A 82 18.86 56.17 REMARK 500 GLU B 19 44.51 -81.04 REMARK 500 SER B 20 -40.11 -130.27 REMARK 500 MET B 27 140.39 -172.72 REMARK 500 ASP B 178 52.86 -93.00 REMARK 500 ALA B 182 68.86 -101.26 REMARK 500 ARG B 183 -175.20 -176.45 REMARK 500 LEU C 69 36.35 -97.67 REMARK 500 LYS C 109 117.44 -160.30 REMARK 500 PHE C 137 -11.90 72.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30375 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF APPLE LATENT SPHERICAL VIRUS (ALSV) DBREF 7CHK A 1 176 UNP Q9JGP1 Q9JGP1_9SECO 594 769 DBREF 7CHK B 1 192 UNP Q9JGP1 Q9JGP1_9SECO 770 961 DBREF 7CHK C 1 217 UNP Q9JGP1 Q9JGP1_9SECO 377 593 SEQRES 1 A 176 GLY ALA CYS LEU SER ILE PRO ASN PHE PRO VAL HIS ILE SEQRES 2 A 176 THR GLY LYS THR GLN GLN LEU HIS VAL GLY PRO LYS PRO SEQRES 3 A 176 SER ILE ALA ARG PHE SER PHE ASN PRO PHE ASP LEU GLY SEQRES 4 A 176 THR VAL PHE ASN ARG PHE GLN SER LEU CYS ALA HIS LEU SEQRES 5 A 176 GLU GLY TYR SER GLY ASP LEU ILE VAL ASN TRP LEU VAL SEQRES 6 A 176 THR CYS SER ALA LEU THR ASN ALA ARG LEU TYR ILE ILE SEQRES 7 A 176 PRO VAL TYR ASP ASN TYR SER PHE GLU LYS PHE SER GLU SEQRES 8 A 176 GLU LYS LEU ILE GLN CYS LYS TYR GLU PHE LYS GLN ILE SEQRES 9 A 176 SER LEU VAL ARG LYS GLY THR VAL HIS ILE PRO PHE VAL SEQRES 10 A 176 ASN TRP PHE GLY SER TYR SER ARG THR ARG PHE PRO LYS SEQRES 11 A 176 LEU LEU PHE TYR PHE PRO ASN GLY VAL SER GLY PRO SER SEQRES 12 A 176 GLY GLU LYS ILE HIS VAL THR VAL GLN LEU ASP ARG ILE SEQRES 13 A 176 LEU ASN PHE SER GLY LEU GLY HIS ARG LEU PHE LYS GLU SEQRES 14 A 176 ILE GLY PRO LEU VAL GLY GLU SEQRES 1 B 192 GLY SER ASP PRO PHE SER PHE LEU LEU ASN TYR SER HIS SEQRES 2 B 192 CYS GLY THR LEU VAL GLU SER SER LEU ASN LYS GLY GLY SEQRES 3 B 192 MET TRP CYS VAL PRO VAL SER PRO VAL ASN LEU ALA ALA SEQRES 4 B 192 TYR THR LEU GLN GLY GLU ALA LEU VAL PHE ASN ASP ALA SEQRES 5 B 192 PHE VAL SER LYS THR HIS ASN TRP LEU HIS PHE MET ALA SEQRES 6 B 192 SER THR THR ALA TYR TRP ARG GLY THR LEU HIS TYR GLN SEQRES 7 B 192 MET ARG VAL THR TYR LYS ASP ARG ASN ALA ALA CYS ARG SEQRES 8 B 192 ASN LEU VAL ALA PHE TYR THR THR ASN ASN GLU SER LEU SEQRES 9 B 192 PHE GLY PHE ASN ASN LYS PRO VAL GLY ASP THR GLY ILE SEQRES 10 B 192 SER SER VAL MET GLY ASP SER PHE SER VAL ASP ILE THR SEQRES 11 B 192 VAL PRO PHE LEU ILE PRO THR CYS TYR LEU GLN THR ILE SEQRES 12 B 192 ARG GLY LYS PHE ASP TYR LEU ASN SER CYS ASN GLY CYS SEQRES 13 B 192 ILE TYR PHE HIS LEU PRO THR LYS SER ALA THR SER VAL SEQRES 14 B 192 GLN LEU TRP VAL ARG PRO GLY GLN ASP PHE ASP PHE ALA SEQRES 15 B 192 ARG PHE ARG LEU LEU LYS ALA GLY TYR THR SEQRES 1 C 217 GLY PRO ASP PHE THR LYS ILE ILE TRP PRO THR VAL VAL SEQRES 2 C 217 GLU ARG ASN PHE SER ASN PRO GLN SER GLU ILE THR THR SEQRES 3 C 217 THR LEU GLN GLU LEU TYR GLY ASP THR PHE GLU THR VAL SEQRES 4 C 217 SER ILE CYS PRO PRO GLN SER TYR GLY GLY GLU LEU LEU SEQRES 5 C 217 LYS GLY LYS ILE PHE PHE SER SER THR PRO GLU PHE THR SEQRES 6 C 217 ARG GLU ASP LEU VAL GLU GLY LYS ILE LEU ALA SER PHE SEQRES 7 C 217 LYS LEU ASP GLU VAL LEU SER GLY LEU GLY MET GLY ALA SEQRES 8 C 217 MET LEU MET THR GLN ILE MET SER GLY HIS ALA THR ILE SEQRES 9 C 217 ARG VAL SER ALA LYS VAL MET LEU SER LYS PHE CYS SER SEQRES 10 C 217 PHE ALA LEU LYS LEU VAL TYR ASP GLU LEU MET GLN LEU SEQRES 11 C 217 ASN SER ASP THR THR ASP PHE GLY LYS ILE SER VAL LEU SEQRES 12 C 217 PRO GLY ALA ILE PHE SER THR GLN GLU GLU GLU PHE SER SEQRES 13 C 217 PHE ASP PHE GLU LEU PHE SER PRO GLY VAL HIS LEU LYS SEQRES 14 C 217 PHE ASP ASN ASN LYS LEU LEU GLY LYS VAL HIS LEU ALA SEQRES 15 C 217 ALA LEU SER ALA PRO ASN LEU THR GLU ASN MET PRO GLU SEQRES 16 C 217 SER PHE SER CYS THR PHE ASN PHE SER ILE VAL ASP VAL SEQRES 17 C 217 LYS THR THR PHE TYR ASN ILE GLY GLN HELIX 1 AA1 ASN A 43 ALA A 50 1 8 HELIX 2 AA2 SER A 90 CYS A 97 1 8 HELIX 3 AA3 ASN B 36 TYR B 40 5 5 HELIX 4 AA4 ASN B 59 THR B 67 1 9 HELIX 5 AA5 ASP B 85 ALA B 89 5 5 HELIX 6 AA6 LEU C 28 TYR C 32 5 5 HELIX 7 AA7 GLY C 48 LEU C 52 5 5 HELIX 8 AA8 GLU C 67 LEU C 69 5 3 HELIX 9 AA9 LEU C 80 LEU C 84 1 5 HELIX 10 AB1 GLY C 88 LEU C 93 1 6 HELIX 11 AB2 PHE C 137 LEU C 143 1 7 SHEET 1 AA1 3 LEU A 4 THR A 14 0 SHEET 2 AA1 3 LYS A 146 LEU A 162 -1 O PHE A 159 N ILE A 6 SHEET 3 AA1 3 GLN A 18 HIS A 21 -1 N GLN A 18 O VAL A 149 SHEET 1 AA2 5 LEU A 4 THR A 14 0 SHEET 2 AA2 5 LYS A 146 LEU A 162 -1 O PHE A 159 N ILE A 6 SHEET 3 AA2 5 GLY A 54 THR A 66 -1 N ASP A 58 O LEU A 157 SHEET 4 AA2 5 LYS A 109 ILE A 114 -1 O ILE A 114 N LEU A 59 SHEET 5 AA2 5 ASP C 34 THR C 38 1 O THR C 35 N THR A 111 SHEET 1 AA3 4 SER A 27 SER A 32 0 SHEET 2 AA3 4 LYS A 130 PHE A 135 -1 O PHE A 133 N ALA A 29 SHEET 3 AA3 4 ARG A 74 VAL A 80 -1 N TYR A 76 O TYR A 134 SHEET 4 AA3 4 LYS A 102 GLN A 103 -1 O LYS A 102 N LEU A 75 SHEET 1 AA4 4 SER B 12 THR B 16 0 SHEET 2 AA4 4 ALA B 166 ARG B 174 -1 O VAL B 173 N SER B 12 SHEET 3 AA4 4 LEU B 75 TYR B 83 -1 N THR B 82 O THR B 167 SHEET 4 AA4 4 SER B 126 VAL B 131 -1 O VAL B 131 N LEU B 75 SHEET 1 AA5 4 TRP B 28 PRO B 31 0 SHEET 2 AA5 4 CYS B 156 PHE B 159 -1 O ILE B 157 N VAL B 30 SHEET 3 AA5 4 VAL B 94 THR B 98 -1 N PHE B 96 O TYR B 158 SHEET 4 AA5 4 SER B 118 MET B 121 -1 O SER B 118 N TYR B 97 SHEET 1 AA6 2 TYR B 70 TRP B 71 0 SHEET 2 AA6 2 LEU B 140 GLN B 141 -1 O LEU B 140 N TRP B 71 SHEET 1 AA7 4 ILE C 56 SER C 60 0 SHEET 2 AA7 4 SER C 196 TYR C 213 -1 O PHE C 201 N SER C 60 SHEET 3 AA7 4 ILE C 97 VAL C 110 -1 N LYS C 109 O THR C 200 SHEET 4 AA7 4 PHE C 155 GLU C 160 -1 O PHE C 155 N ALA C 108 SHEET 1 AA8 4 GLU C 63 THR C 65 0 SHEET 2 AA8 4 SER C 196 TYR C 213 -1 O PHE C 197 N PHE C 64 SHEET 3 AA8 4 ILE C 97 VAL C 110 -1 N LYS C 109 O THR C 200 SHEET 4 AA8 4 LEU C 168 LYS C 169 -1 O LEU C 168 N GLY C 100 SHEET 1 AA9 4 ILE C 74 LYS C 79 0 SHEET 2 AA9 4 LYS C 178 ALA C 183 -1 O LEU C 181 N LEU C 75 SHEET 3 AA9 4 ALA C 119 ASP C 125 -1 N LYS C 121 O ALA C 182 SHEET 4 AA9 4 GLY C 145 SER C 149 -1 O PHE C 148 N LEU C 120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000