HEADER IMMUNOSUPPRESSANT 06-JUL-20 7CHY TITLE CRYSTAL STRUCTURE OF HUMAN IL-1BETA IN COMPLEX WITH ANTIBODY BINDING TITLE 2 FRAGMENT OF IGG26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN OF ANTIBODY BINDING FRAGMENT OF IGG26; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF ANTIBODY BINDING FRAGMENT OF IGG26; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERLEUKIN-1 BETA; COMPND 11 CHAIN: I; COMPND 12 SYNONYM: IL-1 BETA,CATABOLIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: IL1B, IL1F2; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, ANTIBODY, INTERLEUKIN-1BETA, IMMUNOSUPPRESSANT EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LEE,A.H.J.WANG,W.C.KUO REVDAT 4 16-OCT-24 7CHY 1 REMARK REVDAT 3 29-NOV-23 7CHY 1 REMARK REVDAT 2 27-JAN-21 7CHY 1 JRNL REVDAT 1 13-JAN-21 7CHY 0 JRNL AUTH W.C.KUO,C.C.LEE,Y.W.CHANG,W.PANG,H.S.CHEN,S.C.HOU,S.Y.LO, JRNL AUTH 2 A.S.YANG,A.H.WANG JRNL TITL STRUCTURE-BASED DEVELOPMENT OF HUMAN INTERLEUKIN-1 JRNL TITL 2 BETA-SPECIFIC ANTIBODY THAT SIMULTANEOUSLY INHIBITS BINDING JRNL TITL 3 TO BOTH IL-1RI AND IL-1RACP. JRNL REF J.MOL.BIOL. V. 433 66766 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 33359099 JRNL DOI 10.1016/J.JMB.2020.166766 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 18103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.320 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.41700 REMARK 3 B22 (A**2) : -2.81500 REMARK 3 B33 (A**2) : 0.24500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.88200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.366 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4536 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4069 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6160 ; 1.264 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9509 ; 1.106 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 569 ; 7.079 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;35.821 ;23.725 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 747 ;14.438 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.349 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.042 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5054 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 919 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 692 ; 0.165 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 67 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2086 ; 0.156 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2288 ; 1.402 ; 3.191 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2287 ; 1.402 ; 3.189 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2853 ; 2.606 ; 4.775 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2854 ; 2.606 ; 4.777 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2248 ; 0.744 ; 3.271 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2248 ; 0.744 ; 3.271 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3307 ; 1.541 ; 4.834 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3308 ; 1.540 ; 4.835 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 211 REMARK 3 ORIGIN FOR THE GROUP (A): 47.6062 -15.6055 -0.7125 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: 0.8552 REMARK 3 T33: 0.4358 T12: -0.1918 REMARK 3 T13: -0.0474 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.5856 L22: 4.2211 REMARK 3 L33: 0.9215 L12: 1.3640 REMARK 3 L13: 0.1655 L23: 1.3250 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.3219 S13: 0.1588 REMARK 3 S21: 0.3030 S22: -0.0287 S23: 0.2205 REMARK 3 S31: 0.2469 S32: -0.6634 S33: 0.0155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 3 H 220 REMARK 3 ORIGIN FOR THE GROUP (A): 65.5399 -9.8946 0.1532 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.5678 REMARK 3 T33: 0.2285 T12: -0.0551 REMARK 3 T13: -0.0833 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.4148 L22: 1.4159 REMARK 3 L33: 2.0293 L12: 0.3220 REMARK 3 L13: -0.2368 L23: 1.2326 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: 0.2142 S13: 0.1278 REMARK 3 S21: 0.1394 S22: 0.2115 S23: 0.0819 REMARK 3 S31: 0.2446 S32: -0.3014 S33: -0.1244 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 119 I 268 REMARK 3 ORIGIN FOR THE GROUP (A): 54.8516 28.7484 25.2921 REMARK 3 T TENSOR REMARK 3 T11: 0.3692 T22: 0.3524 REMARK 3 T33: 0.3790 T12: 0.1413 REMARK 3 T13: 0.1883 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.1529 L22: 4.5983 REMARK 3 L33: 1.0582 L12: -1.0116 REMARK 3 L13: 0.4234 L23: 0.1515 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0170 S13: 0.1657 REMARK 3 S21: 0.6402 S22: 0.1166 S23: 0.3149 REMARK 3 S31: -0.0466 S32: 0.0732 S33: -0.0858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7CHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 3.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 19.763 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2I1B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% (W/V) PEG 3350, 10% (V/V) REMARK 280 GLYCEROL, AND 0.1 M CITRIC ACID AT PH 3.8., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.17200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.17200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 GLU H 1 REMARK 465 VAL H 2 REMARK 465 SER H 135 REMARK 465 LYS H 136 REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 139 REMARK 465 GLY H 140 REMARK 465 LYS H 221 REMARK 465 SER H 222 REMARK 465 CYS H 223 REMARK 465 ASP H 224 REMARK 465 LYS H 225 REMARK 465 LEU H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 LEU I 113 REMARK 465 GLY I 114 REMARK 465 SER I 115 REMARK 465 ARG I 116 REMARK 465 ALA I 117 REMARK 465 PRO I 118 REMARK 465 SER I 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -122.38 61.99 REMARK 500 LEU L 47 -67.65 -121.02 REMARK 500 THR L 51 -55.19 76.96 REMARK 500 SER L 67 45.71 -151.81 REMARK 500 SER L 121 161.11 -49.63 REMARK 500 ASN L 138 78.31 43.50 REMARK 500 ASN L 158 29.83 -147.70 REMARK 500 TYR H 54 -75.19 -49.89 REMARK 500 ASN H 77 42.79 38.34 REMARK 500 TYR H 105 77.10 -103.10 REMARK 500 THR H 167 -48.27 -132.78 REMARK 500 SER I 159 70.90 -105.60 REMARK 500 ASN I 182 33.20 70.48 REMARK 500 LYS I 190 -62.72 -130.25 REMARK 500 ASP I 191 54.06 -111.30 REMARK 500 ASN I 223 -125.11 -113.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 360 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH L 361 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH L 362 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH L 363 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH H 470 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH H 471 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH H 472 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH H 473 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH I 342 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH I 343 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH I 344 DISTANCE = 7.36 ANGSTROMS DBREF 7CHY L 1 214 PDB 7CHY 7CHY 1 214 DBREF 7CHY H 1 234 PDB 7CHY 7CHY 1 234 DBREF 7CHY I 117 269 UNP P01584 IL1B_HUMAN 117 269 SEQADV 7CHY LEU I 113 UNP P01584 EXPRESSION TAG SEQADV 7CHY GLY I 114 UNP P01584 EXPRESSION TAG SEQADV 7CHY SER I 115 UNP P01584 EXPRESSION TAG SEQADV 7CHY ARG I 116 UNP P01584 EXPRESSION TAG SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN ASP VAL SER TRP GLY VAL ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER THR ALA SEQRES 5 L 214 SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 SER ASN PHE PRO ILE THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 234 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 234 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 234 PHE THR ILE ASN GLY TYR SER ILE HIS TRP VAL ARG GLN SEQRES 4 H 234 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE TRP SEQRES 5 H 234 PRO TYR GLY GLY PHE THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 234 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 H 234 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 234 ALA VAL TYR TYR CYS ALA ARG PHE ASN GLY TYR TRP ASN SEQRES 9 H 234 TYR ILE MET ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 234 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 234 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 234 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 234 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 234 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 234 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 234 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 234 PRO SER ASN THR LYS VAL ASP LYS LYS ALA GLU PRO LYS SEQRES 18 H 234 SER CYS ASP LYS LEU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 I 157 LEU GLY SER ARG ALA PRO VAL ARG SER LEU ASN CYS THR SEQRES 2 I 157 LEU ARG ASP SER GLN GLN LYS SER LEU VAL MET SER GLY SEQRES 3 I 157 PRO TYR GLU LEU LYS ALA LEU HIS LEU GLN GLY GLN ASP SEQRES 4 I 157 MET GLU GLN GLN VAL VAL PHE SER MET SER PHE VAL GLN SEQRES 5 I 157 GLY GLU GLU SER ASN ASP LYS ILE PRO VAL ALA LEU GLY SEQRES 6 I 157 LEU LYS GLU LYS ASN LEU TYR LEU SER CYS VAL LEU LYS SEQRES 7 I 157 ASP ASP LYS PRO THR LEU GLN LEU GLU SER VAL ASP PRO SEQRES 8 I 157 LYS ASN TYR PRO LYS LYS LYS MET GLU LYS ARG PHE VAL SEQRES 9 I 157 PHE ASN LYS ILE GLU ILE ASN ASN LYS LEU GLU PHE GLU SEQRES 10 I 157 SER ALA GLN PHE PRO ASN TRP TYR ILE SER THR SER GLN SEQRES 11 I 157 ALA GLU ASN MET PRO VAL PHE LEU GLY GLY THR LYS GLY SEQRES 12 I 157 GLY GLN ASP ILE THR ASP PHE THR MET GLN PHE VAL SER SEQRES 13 I 157 SER FORMUL 4 HOH *279(H2 O) HELIX 1 AA1 GLU L 123 SER L 127 5 5 HELIX 2 AA2 LYS L 183 GLU L 187 1 5 HELIX 3 AA3 THR H 28 TYR H 32 5 5 HELIX 4 AA4 THR H 74 LYS H 76 5 3 HELIX 5 AA5 ARG H 87 THR H 91 5 5 HELIX 6 AA6 SER H 163 ALA H 165 5 3 HELIX 7 AA7 SER H 194 THR H 198 5 5 HELIX 8 AA8 LYS H 208 ASN H 211 5 4 HELIX 9 AA9 GLN I 148 GLN I 155 5 8 HELIX 10 AB1 GLU I 212 PHE I 215 5 4 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AA2 6 SER L 10 SER L 14 0 SHEET 2 AA2 6 THR L 102 LYS L 107 1 O LYS L 103 N LEU L 11 SHEET 3 AA2 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA2 6 VAL L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA2 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AA2 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA3 4 SER L 10 SER L 14 0 SHEET 2 AA3 4 THR L 102 LYS L 107 1 O LYS L 103 N LEU L 11 SHEET 3 AA3 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AA5 3 LYS L 145 VAL L 150 0 SHEET 2 AA5 3 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 3 AA5 3 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 AA6 4 LEU H 4 SER H 7 0 SHEET 2 AA6 4 LEU H 18 ALA H 24 -1 O ALA H 23 N VAL H 5 SHEET 3 AA6 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA6 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA7 6 GLY H 10 VAL H 12 0 SHEET 2 AA7 6 THR H 114 VAL H 118 1 O LEU H 115 N GLY H 10 SHEET 3 AA7 6 ALA H 92 ASN H 100 -1 N ALA H 92 O VAL H 116 SHEET 4 AA7 6 SER H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA7 6 GLU H 46 TRP H 52 -1 O VAL H 48 N TRP H 36 SHEET 6 AA7 6 PHE H 57 TYR H 60 -1 O PHE H 57 N TRP H 52 SHEET 1 AA8 4 GLY H 10 VAL H 12 0 SHEET 2 AA8 4 THR H 114 VAL H 118 1 O LEU H 115 N GLY H 10 SHEET 3 AA8 4 ALA H 92 ASN H 100 -1 N ALA H 92 O VAL H 116 SHEET 4 AA8 4 TYR H 105 TRP H 110 -1 O TYR H 105 N ASN H 100 SHEET 1 AA9 4 SER H 127 LEU H 131 0 SHEET 2 AA9 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AA9 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AA9 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AB1 4 SER H 127 LEU H 131 0 SHEET 2 AB1 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AB1 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AB1 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AB2 3 THR H 158 TRP H 161 0 SHEET 2 AB2 3 ILE H 202 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AB2 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SHEET 1 AB3 6 GLU I 229 SER I 230 0 SHEET 2 AB3 6 PHE I 217 ILE I 220 -1 N ASN I 218 O GLU I 229 SHEET 3 AB3 6 LYS I 171 ALA I 175 -1 N ILE I 172 O LYS I 219 SHEET 4 AB3 6 PHE I 158 PHE I 162 -1 N SER I 161 O ALA I 175 SHEET 5 AB3 6 SER I 121 ASP I 128 -1 N CYS I 124 O PHE I 158 SHEET 6 AB3 6 PHE I 262 VAL I 267 -1 O THR I 263 N ARG I 127 SHEET 1 AB4 3 SER I 133 MET I 136 0 SHEET 2 AB4 3 LEU I 142 LEU I 145 -1 O LYS I 143 N VAL I 135 SHEET 3 AB4 3 MET I 246 PRO I 247 -1 O MET I 246 N ALA I 144 SHEET 1 AB5 2 LEU I 183 LEU I 189 0 SHEET 2 AB5 2 PRO I 194 SER I 200 -1 O GLN I 197 N SER I 186 SHEET 1 AB6 2 TYR I 237 SER I 239 0 SHEET 2 AB6 2 PHE I 249 GLY I 251 -1 O PHE I 249 N SER I 239 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.07 SSBOND 4 CYS H 147 CYS H 203 1555 1555 2.06 CISPEP 1 SER L 7 PRO L 8 0 -10.82 CISPEP 2 PHE L 94 PRO L 95 0 0.39 CISPEP 3 TYR L 140 PRO L 141 0 7.54 CISPEP 4 PHE H 153 PRO H 154 0 -10.86 CISPEP 5 GLU H 155 PRO H 156 0 -2.78 CISPEP 6 TYR I 206 PRO I 207 0 4.36 CRYST1 156.344 112.240 38.577 90.00 94.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006396 0.000000 0.000542 0.00000 SCALE2 0.000000 0.008909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026015 0.00000