HEADER HYDROLASE 07-JUL-20 7CIE TITLE CRYSTAL STRUCTURE OF P.AERUGINOSA LPXC IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE,UDP-3-O-[R-3- COMPND 5 HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 6 EC: 3.5.1.108; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: LPXC, ENVA, PA4406; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE, ENVA, LPXC, PSEUDOMONAS KEYWDS 2 AERUGINOSA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.BAKER,M.MIMA,A.SURGENOR,A.ROBERTSON REVDAT 3 29-NOV-23 7CIE 1 REMARK REVDAT 2 23-DEC-20 7CIE 1 JRNL REVDAT 1 02-DEC-20 7CIE 0 JRNL AUTH Y.YAMADA,H.TAKASHIMA,D.L.WALMSLEY,F.USHIYAMA,Y.MATSUDA, JRNL AUTH 2 H.KANAZAWA,T.YAMAGUCHI-SASAKI,N.TANAKA-YAMAMOTO,J.YAMAGISHI, JRNL AUTH 3 R.KURIMOTO-TSURUTA,Y.OGATA,N.OHTAKE,H.ANGOVE,L.BAKER, JRNL AUTH 4 R.HARRIS,A.MACIAS,A.ROBERTSON,A.SURGENOR,H.WATANABE, JRNL AUTH 5 K.NAKANO,M.MIMA,K.IWAMOTO,A.OKADA,I.TAKATA,K.HITAKA, JRNL AUTH 6 A.TANAKA,K.FUJITA,H.SUGIYAMA,R.E.HUBBARD JRNL TITL FRAGMENT-BASED DISCOVERY OF NOVEL NON-HYDROXAMATE LPXC JRNL TITL 2 INHIBITORS WITH ANTIBACTERIAL ACTIVITY. JRNL REF J.MED.CHEM. V. 63 14805 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 33210531 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01215 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 31104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.62000 REMARK 3 B13 (A**2) : -0.82000 REMARK 3 B23 (A**2) : -0.57000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.313 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.840 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.849 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4532 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4284 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6124 ; 1.710 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9886 ; 1.298 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 8.800 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;34.432 ;22.181 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 776 ;18.917 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5097 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 978 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2280 ; 2.207 ; 2.545 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2279 ; 2.200 ; 2.544 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2843 ; 3.492 ; 3.806 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2844 ; 3.492 ; 3.808 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2252 ; 2.404 ; 2.854 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2252 ; 2.404 ; 2.854 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3282 ; 3.843 ; 4.172 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5022 ; 5.852 ;29.999 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5011 ; 5.847 ;29.973 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7CIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER TURBO X-RAY SOURCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 70.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.240 REMARK 200 R MERGE (I) : 0.12960 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.08 REMARK 200 R MERGE FOR SHELL (I) : 0.48030 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3UHM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PACT PREMIER HT-96 F5 (20% PEG3350; REMARK 280 0.2M SODIUM NITRATE; 0.1M BIS-TRIS PROPANE PH 6.5), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 59 REMARK 465 THR A 60 REMARK 465 ASP A 288 REMARK 465 ALA A 289 REMARK 465 ARG A 290 REMARK 465 THR A 291 REMARK 465 ALA A 292 REMARK 465 PRO A 293 REMARK 465 ILE A 294 REMARK 465 SER A 295 REMARK 465 TYR A 296 REMARK 465 MET A 297 REMARK 465 ARG A 298 REMARK 465 PRO A 299 REMARK 465 GLU B 59 REMARK 465 THR B 60 REMARK 465 ALA B 289 REMARK 465 ARG B 290 REMARK 465 THR B 291 REMARK 465 ALA B 292 REMARK 465 PRO B 293 REMARK 465 ILE B 294 REMARK 465 SER B 295 REMARK 465 TYR B 296 REMARK 465 MET B 297 REMARK 465 ARG B 298 REMARK 465 PRO B 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 62 CG SD CE REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 MET B 62 CG SD CE REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 445 O HOH A 500 2.02 REMARK 500 O HOH B 471 O HOH B 482 2.18 REMARK 500 O HOH A 461 O HOH A 487 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 163 N PRO A 163 CA 0.215 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 163 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 PRO A 163 CA - N - CD ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 -167.51 -125.64 REMARK 500 ASP A 45 98.14 -170.19 REMARK 500 MET A 103 -132.48 49.54 REMARK 500 SER A 106 -164.38 -120.64 REMARK 500 ALA A 124 141.19 -170.84 REMARK 500 THR A 169 131.52 -37.88 REMARK 500 SER A 178 -60.77 -94.41 REMARK 500 ASN A 220 -50.53 -122.11 REMARK 500 ASN A 224 61.98 -119.77 REMARK 500 MET B 103 -123.14 53.36 REMARK 500 SER B 106 -167.43 -121.75 REMARK 500 SER B 178 -77.69 -133.15 REMARK 500 VAL B 185 -41.59 -132.67 REMARK 500 ASP B 218 -169.14 -79.65 REMARK 500 ASN B 220 -51.62 -127.43 REMARK 500 ASN B 224 70.41 -110.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 522 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 237 NE2 95.0 REMARK 620 3 ASP A 241 OD1 110.4 99.6 REMARK 620 4 FZ6 A 301 O10 84.1 84.3 164.4 REMARK 620 5 FZ6 A 301 N16 110.5 146.2 92.1 76.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 HIS B 237 NE2 106.7 REMARK 620 3 ASP B 241 OD1 113.5 93.0 REMARK 620 4 FZ6 B 301 O10 86.5 85.5 159.4 REMARK 620 5 FZ6 B 301 N16 104.5 137.5 100.3 68.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FZ6 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FZ6 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 DBREF 7CIE A 1 299 UNP P47205 LPXC_PSEAE 1 299 DBREF 7CIE B 1 299 UNP P47205 LPXC_PSEAE 1 299 SEQADV 7CIE SER A 40 UNP P47205 CYS 40 ENGINEERED MUTATION SEQADV 7CIE SER B 40 UNP P47205 CYS 40 ENGINEERED MUTATION SEQRES 1 A 299 MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG ALA SEQRES 2 A 299 THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR LEU SEQRES 3 A 299 THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL PHE SEQRES 4 A 299 SER ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO ALA SEQRES 5 A 299 ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR THR SEQRES 6 A 299 LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU HIS SEQRES 7 A 299 LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN ALA SEQRES 8 A 299 TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET ASP SEQRES 9 A 299 GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER ALA SEQRES 10 A 299 GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE ARG SEQRES 11 A 299 ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS ARG SEQRES 12 A 299 ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER PHE SEQRES 13 A 299 GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG THR SEQRES 14 A 299 GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE VAL SEQRES 15 A 299 LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET ARG SEQRES 16 A 299 ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU GLY SEQRES 17 A 299 GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN ARG SEQRES 18 A 299 VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU PHE SEQRES 19 A 299 VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU TYR SEQRES 20 A 299 LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY PHE SEQRES 21 A 299 LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG THR SEQRES 22 A 299 LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR PHE SEQRES 23 A 299 GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG PRO SEQRES 1 B 299 MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG ALA SEQRES 2 B 299 THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR LEU SEQRES 3 B 299 THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL PHE SEQRES 4 B 299 SER ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO ALA SEQRES 5 B 299 ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR THR SEQRES 6 B 299 LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU HIS SEQRES 7 B 299 LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN ALA SEQRES 8 B 299 TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET ASP SEQRES 9 B 299 GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER ALA SEQRES 10 B 299 GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE ARG SEQRES 11 B 299 ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS ARG SEQRES 12 B 299 ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER PHE SEQRES 13 B 299 GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG THR SEQRES 14 B 299 GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE VAL SEQRES 15 B 299 LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET ARG SEQRES 16 B 299 ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU GLY SEQRES 17 B 299 GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN ARG SEQRES 18 B 299 VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU PHE SEQRES 19 B 299 VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU TYR SEQRES 20 B 299 LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY PHE SEQRES 21 B 299 LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG THR SEQRES 22 B 299 LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR PHE SEQRES 23 B 299 GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG PRO HET FZ6 A 301 18 HET ZN A 302 1 HET FZ6 B 301 18 HET ZN B 302 1 HETNAM FZ6 (2R)-2-AZANYL-3-OXIDANYL-N-[3-(TRIFLUOROMETHYLOXY) HETNAM 2 FZ6 PHENYL]PROPANAMIDE HETNAM ZN ZINC ION FORMUL 3 FZ6 2(C10 H11 F3 N2 O3) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *220(H2 O) HELIX 1 AA1 ARG A 53 VAL A 57 5 5 HELIX 2 AA2 VAL A 76 LEU A 86 1 11 HELIX 3 AA3 ALA A 107 GLY A 118 1 12 HELIX 4 AA4 HIS A 162 ARG A 166 5 5 HELIX 5 AA5 SER A 180 VAL A 185 1 6 HELIX 6 AA6 MET A 194 GLN A 203 1 10 HELIX 7 AA7 ASN A 224 LEU A 228 5 5 HELIX 8 AA8 ASP A 232 TYR A 247 1 16 HELIX 9 AA9 LEU A 248 GLY A 250 5 3 HELIX 10 AB1 GLY A 263 ASP A 277 1 15 HELIX 11 AB2 ARG B 53 VAL B 57 5 5 HELIX 12 AB3 VAL B 76 LEU B 86 1 11 HELIX 13 AB4 ALA B 107 GLY B 118 1 12 HELIX 14 AB5 HIS B 162 ARG B 166 5 5 HELIX 15 AB6 SER B 180 VAL B 185 1 6 HELIX 16 AB7 MET B 194 GLN B 203 1 10 HELIX 17 AB8 ASN B 224 LEU B 228 5 5 HELIX 18 AB9 ASP B 232 TYR B 247 1 16 HELIX 19 AC1 LEU B 248 GLY B 250 5 3 HELIX 20 AC2 GLY B 263 ASP B 277 1 15 SHEET 1 AA1 2 LYS A 3 LEU A 7 0 SHEET 2 AA1 2 LEU A 119 ALA A 125 -1 O GLN A 120 N THR A 6 SHEET 1 AA2 5 ILE A 11 VAL A 16 0 SHEET 2 AA2 5 LYS A 23 PRO A 30 -1 O LEU A 28 N ILE A 11 SHEET 3 AA2 5 ALA A 91 LEU A 95 -1 O GLU A 94 N THR A 27 SHEET 4 AA2 5 ILE A 37 ARG A 41 1 N SER A 40 O VAL A 93 SHEET 5 AA2 5 VAL A 48 PRO A 51 -1 O ILE A 50 N PHE A 39 SHEET 1 AA3 2 LEU A 66 LYS A 68 0 SHEET 2 AA3 2 VAL A 71 VAL A 73 -1 O VAL A 71 N LYS A 68 SHEET 1 AA4 5 VAL A 135 GLU A 139 0 SHEET 2 AA4 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA4 5 LEU A 253 PHE A 260 -1 O GLU A 256 N VAL A 147 SHEET 4 AA4 5 PHE A 152 ILE A 158 1 N LYS A 153 O PHE A 257 SHEET 5 AA4 5 GLN A 170 ASP A 175 -1 O ALA A 172 N PHE A 156 SHEET 1 AA5 5 VAL A 135 GLU A 139 0 SHEET 2 AA5 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA5 5 LEU A 253 PHE A 260 -1 O GLU A 256 N VAL A 147 SHEET 4 AA5 5 PHE A 128 ILE A 131 1 N ILE A 129 O ILE A 254 SHEET 5 AA5 5 TRP A 281 VAL A 284 -1 O VAL A 284 N PHE A 128 SHEET 1 AA6 2 PHE A 191 PHE A 193 0 SHEET 2 AA6 2 ILE A 215 VAL A 217 1 O VAL A 217 N GLY A 192 SHEET 1 AA7 2 LYS B 3 LEU B 7 0 SHEET 2 AA7 2 LEU B 119 ALA B 125 -1 O GLN B 120 N THR B 6 SHEET 1 AA8 5 ILE B 11 VAL B 16 0 SHEET 2 AA8 5 LYS B 23 LYS B 29 -1 O LEU B 26 N ALA B 13 SHEET 3 AA8 5 ALA B 91 LEU B 95 -1 O GLU B 94 N THR B 27 SHEET 4 AA8 5 ILE B 37 ARG B 41 1 N SER B 40 O VAL B 93 SHEET 5 AA8 5 VAL B 48 PRO B 51 -1 O ILE B 50 N PHE B 39 SHEET 1 AA9 2 LEU B 66 LYS B 68 0 SHEET 2 AA9 2 VAL B 71 VAL B 73 -1 O VAL B 73 N LEU B 66 SHEET 1 AB1 5 VAL B 135 GLU B 139 0 SHEET 2 AB1 5 LYS B 142 VAL B 147 -1 O PHE B 146 N VAL B 135 SHEET 3 AB1 5 SER B 252 PHE B 260 -1 O GLU B 256 N VAL B 147 SHEET 4 AB1 5 PHE B 152 ILE B 158 1 N SER B 155 O GLY B 259 SHEET 5 AB1 5 GLN B 170 ASP B 175 -1 O VAL B 174 N VAL B 154 SHEET 1 AB2 5 VAL B 135 GLU B 139 0 SHEET 2 AB2 5 LYS B 142 VAL B 147 -1 O PHE B 146 N VAL B 135 SHEET 3 AB2 5 SER B 252 PHE B 260 -1 O GLU B 256 N VAL B 147 SHEET 4 AB2 5 PHE B 128 ILE B 131 1 N ILE B 131 O ILE B 254 SHEET 5 AB2 5 TRP B 281 VAL B 284 -1 O GLU B 282 N ARG B 130 SHEET 1 AB3 2 PHE B 191 PHE B 193 0 SHEET 2 AB3 2 ILE B 215 VAL B 217 1 O ILE B 215 N GLY B 192 LINK NE2 HIS A 78 ZN ZN A 302 1555 1555 2.20 LINK NE2 HIS A 237 ZN ZN A 302 1555 1555 1.96 LINK OD1 ASP A 241 ZN ZN A 302 1555 1555 2.09 LINK O10 FZ6 A 301 ZN ZN A 302 1555 1555 2.33 LINK N16 FZ6 A 301 ZN ZN A 302 1555 1555 2.02 LINK NE2 HIS B 78 ZN ZN B 302 1555 1555 1.99 LINK NE2 HIS B 237 ZN ZN B 302 1555 1555 1.99 LINK OD1 ASP B 241 ZN ZN B 302 1555 1555 2.10 LINK O10 FZ6 B 301 ZN ZN B 302 1555 1555 2.41 LINK N16 FZ6 B 301 ZN ZN B 302 1555 1555 2.32 CISPEP 1 ASP A 45 PRO A 46 0 9.70 CISPEP 2 ASP B 45 PRO B 46 0 9.17 SITE 1 AC1 13 LEU A 18 MET A 62 GLU A 77 HIS A 78 SITE 2 AC1 13 THR A 190 GLY A 192 ILE A 197 ASN A 213 SITE 3 AC1 13 ALA A 214 HIS A 237 ASP A 241 HIS A 264 SITE 4 AC1 13 ZN A 302 SITE 1 AC2 4 HIS A 78 HIS A 237 ASP A 241 FZ6 A 301 SITE 1 AC3 13 LEU B 18 MET B 62 GLU B 77 HIS B 78 SITE 2 AC3 13 THR B 190 ILE B 197 ASN B 213 ALA B 214 SITE 3 AC3 13 HIS B 237 ASP B 241 HIS B 264 ZN B 302 SITE 4 AC3 13 HOH B 428 SITE 1 AC4 4 HIS B 78 HIS B 237 ASP B 241 FZ6 B 301 CRYST1 50.118 50.153 73.305 74.86 78.03 63.24 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019953 -0.010061 -0.002343 0.00000 SCALE2 0.000000 0.022330 -0.004371 0.00000 SCALE3 0.000000 0.000000 0.014210 0.00000