HEADER ISOMERASE 12-JUL-20 7CJP TITLE CRYSTAL STRUCTURE OF METAL-FREE STATE OF GLUCOSE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929 KEYWDS GLUCOSE ISOMERASE, METAL-FREE STATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.H.NAM REVDAT 3 29-NOV-23 7CJP 1 REMARK REVDAT 2 25-JAN-23 7CJP 1 JRNL REVDAT 1 14-JUL-21 7CJP 0 JRNL AUTH K.H.NAM JRNL TITL CRYSTAL STRUCTURE OF THE METAL-FREE STATE OF GLUCOSE JRNL TITL 2 ISOMERASE REVEALS ITS MINIMAL OPEN CONFIGURATION FOR METAL JRNL TITL 3 BINDING. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 547 69 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 33610042 JRNL DOI 10.1016/J.BBRC.2021.02.026 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 125957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.580 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4600 - 3.6300 1.00 9318 150 0.1535 0.1590 REMARK 3 2 3.6300 - 2.8800 1.00 9007 144 0.1350 0.1337 REMARK 3 3 2.8800 - 2.5100 1.00 8945 149 0.1308 0.1458 REMARK 3 4 2.5100 - 2.2800 1.00 8922 141 0.1246 0.1536 REMARK 3 5 2.2800 - 2.1200 1.00 8885 141 0.1280 0.1498 REMARK 3 6 2.1200 - 2.0000 1.00 8876 143 0.1362 0.1765 REMARK 3 7 2.0000 - 1.9000 1.00 8806 142 0.1465 0.1774 REMARK 3 8 1.9000 - 1.8100 1.00 8842 139 0.1529 0.1715 REMARK 3 9 1.8100 - 1.7400 1.00 8814 152 0.1561 0.1623 REMARK 3 10 1.7400 - 1.6800 1.00 8850 134 0.1674 0.1974 REMARK 3 11 1.6800 - 1.6300 1.00 8789 149 0.1808 0.2052 REMARK 3 12 1.6300 - 1.5800 1.00 8812 141 0.1901 0.2025 REMARK 3 13 1.5800 - 1.5400 1.00 8770 143 0.2072 0.2448 REMARK 3 14 1.5400 - 1.5000 0.94 8325 128 0.2238 0.2644 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1300017727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6IRK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, AMMONIUM SULFATE, MAGNESIUM REMARK 280 SULFATE, PH 7.0, BATCH MODE, TEMPERATURE 298.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.14400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.50450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.14400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.50450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 93.00900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 388 REMARK 465 MET B 1 REMARK 465 GLY B 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 205 O1 EDO A 410 1.39 REMARK 500 O HOH A 651 O HOH A 660 1.88 REMARK 500 O HOH A 607 O HOH A 767 1.89 REMARK 500 O HOH B 968 O HOH B 994 1.90 REMARK 500 O HOH B 717 O HOH B 933 1.93 REMARK 500 O HOH B 709 O HOH B 845 1.94 REMARK 500 O HOH A 738 O HOH B 922 1.94 REMARK 500 O HOH B 966 O HOH B 967 1.96 REMARK 500 O HOH A 780 O HOH B 961 1.96 REMARK 500 O HOH A 781 O HOH A 797 1.97 REMARK 500 O HOH A 739 O HOH A 770 1.97 REMARK 500 O HOH A 779 O HOH A 794 1.98 REMARK 500 O HOH A 784 O HOH B 857 2.00 REMARK 500 O HOH A 775 O HOH A 793 2.01 REMARK 500 O HOH A 668 O HOH A 787 2.01 REMARK 500 O HOH B 889 O HOH B 969 2.02 REMARK 500 O HOH A 715 O HOH A 727 2.02 REMARK 500 O HOH B 955 O HOH B 1012 2.02 REMARK 500 O HOH B 859 O HOH B 920 2.04 REMARK 500 O HOH A 710 O HOH A 782 2.05 REMARK 500 O HOH A 501 O HOH A 504 2.05 REMARK 500 O HOH A 729 O HOH A 747 2.06 REMARK 500 O HOH B 981 O HOH B 999 2.07 REMARK 500 OD1 ASP A 255 O HOH A 501 2.07 REMARK 500 O HOH B 870 O HOH B 955 2.08 REMARK 500 O HOH A 544 O HOH A 704 2.11 REMARK 500 O HOH A 529 O HOH A 674 2.11 REMARK 500 O HOH A 515 O HOH A 634 2.11 REMARK 500 O HOH B 964 O HOH B 984 2.11 REMARK 500 O HOH B 715 O HOH B 829 2.12 REMARK 500 O HOH B 877 O HOH B 959 2.13 REMARK 500 O HOH B 706 O HOH B 797 2.14 REMARK 500 OE2 GLU B 217 O HOH B 701 2.14 REMARK 500 O HOH A 738 O HOH B 772 2.15 REMARK 500 O HOH A 721 O HOH A 770 2.16 REMARK 500 O HOH A 806 O HOH A 820 2.16 REMARK 500 OE2 GLU A 217 O HOH A 502 2.17 REMARK 500 OD1 ASP B 255 O HOH B 702 2.17 REMARK 500 NH2 ARG A 205 O1 EDO A 410 2.18 REMARK 500 O1 EDO B 608 O HOH B 703 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 316 O LEU A 384 2565 1.56 REMARK 500 O HOH B 896 O HOH B 960 2565 1.99 REMARK 500 O HOH A 652 O HOH A 776 2565 1.99 REMARK 500 O HOH A 712 O HOH A 811 2565 2.05 REMARK 500 O HOH B 706 O HOH B 961 4555 2.19 REMARK 500 O HOH A 772 O HOH A 790 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 220 CE1 HIS A 220 NE2 -0.107 REMARK 500 HIS A 220 NE2 HIS A 220 CD2 -0.073 REMARK 500 HIS B 220 CE1 HIS B 220 NE2 -0.109 REMARK 500 HIS B 220 NE2 HIS B 220 CD2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 55 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 336 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -75.92 -85.39 REMARK 500 PHE A 94 -25.34 -142.85 REMARK 500 GLU A 186 104.40 82.02 REMARK 500 ASN A 247 -168.24 -170.23 REMARK 500 LYS A 253 -172.69 -175.65 REMARK 500 LYS A 253 -170.52 -172.12 REMARK 500 ALA A 343 61.84 -153.83 REMARK 500 PHE A 357 -75.65 -153.98 REMARK 500 THR B 17 -74.23 -87.65 REMARK 500 PHE B 94 -22.71 -141.50 REMARK 500 GLU B 186 105.57 82.18 REMARK 500 ASN B 247 -169.04 -167.92 REMARK 500 LYS B 253 -171.54 -171.56 REMARK 500 ALA B 343 59.25 -150.97 REMARK 500 PHE B 357 -74.34 -152.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 610 DBREF 7CJP A 1 388 UNP P24300 XYLA_STRRU 1 388 DBREF 7CJP B 1 388 UNP P24300 XYLA_STRRU 1 388 SEQRES 1 A 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 A 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 A 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 A 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 A 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 A 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 A 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 A 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 A 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 A 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 A 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 A 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 A 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 A 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 A 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 A 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 A 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 A 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 A 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 A 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 A 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 A 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 A 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 A 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 A 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 A 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 A 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 A 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 A 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 A 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY SEQRES 1 B 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 B 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 B 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 B 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 B 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 B 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 B 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 B 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 B 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 B 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 B 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 B 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 B 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 B 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 B 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 B 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 B 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 B 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 B 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 B 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 B 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 B 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 B 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 B 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 B 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 B 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 B 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 B 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 B 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 B 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET EDO A 401 10 HET EDO A 402 10 HET EDO A 403 10 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET EDO A 408 10 HET EDO A 409 10 HET EDO A 410 10 HET EDO A 411 10 HET EDO A 412 10 HET EDO A 413 10 HET EDO B 601 10 HET EDO B 602 10 HET EDO B 603 10 HET EDO B 604 10 HET EDO B 605 10 HET EDO B 606 10 HET EDO B 607 10 HET EDO B 608 10 HET EDO B 609 10 HET EDO B 610 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 23(C2 H6 O2) FORMUL 26 HOH *634(H2 O) HELIX 1 AA1 THR A 6 ASP A 9 5 4 HELIX 2 AA2 LEU A 15 GLY A 19 1 5 HELIX 3 AA3 ASP A 35 LEU A 46 1 12 HELIX 4 AA4 ASP A 55 ILE A 59 1 5 HELIX 5 AA5 SER A 64 GLY A 83 1 20 HELIX 6 AA6 HIS A 96 LYS A 100 5 5 HELIX 7 AA7 ASP A 108 GLY A 130 1 23 HELIX 8 AA8 ASP A 150 GLY A 173 1 24 HELIX 9 AA9 THR A 195 GLU A 204 1 10 HELIX 10 AB1 ARG A 208 GLU A 210 5 3 HELIX 11 AB2 GLU A 217 MET A 223 1 7 HELIX 12 AB3 ASN A 227 ALA A 238 1 12 HELIX 13 AB4 ASP A 264 ALA A 278 1 15 HELIX 14 AB5 ASP A 295 ASP A 323 1 29 HELIX 15 AB6 ASP A 323 SER A 333 1 11 HELIX 16 AB7 ARG A 334 ALA A 339 1 6 HELIX 17 AB8 GLY A 346 ASP A 352 1 7 HELIX 18 AB9 ASP A 353 PHE A 357 5 5 HELIX 19 AC1 ASP A 361 ALA A 367 1 7 HELIX 20 AC2 ALA A 371 GLY A 385 1 15 HELIX 21 AC3 THR B 6 ASP B 9 5 4 HELIX 22 AC4 LEU B 15 GLY B 19 1 5 HELIX 23 AC5 ASP B 35 GLY B 47 1 13 HELIX 24 AC6 ASP B 55 ILE B 59 1 5 HELIX 25 AC7 SER B 64 GLY B 83 1 20 HELIX 26 AC8 HIS B 96 LYS B 100 5 5 HELIX 27 AC9 ASP B 108 GLY B 130 1 23 HELIX 28 AD1 ASP B 150 GLY B 173 1 24 HELIX 29 AD2 THR B 195 GLU B 204 1 10 HELIX 30 AD3 ARG B 208 GLU B 210 5 3 HELIX 31 AD4 GLU B 217 MET B 223 1 7 HELIX 32 AD5 ASN B 227 GLY B 239 1 13 HELIX 33 AD6 ASP B 264 GLY B 279 1 16 HELIX 34 AD7 ASP B 295 ASP B 323 1 29 HELIX 35 AD8 ASP B 323 SER B 333 1 11 HELIX 36 AD9 ASP B 336 ARG B 340 5 5 HELIX 37 AE1 GLY B 346 ASP B 353 1 8 HELIX 38 AE2 ARG B 354 PHE B 357 5 4 HELIX 39 AE3 ASP B 361 ALA B 367 1 7 HELIX 40 AE4 ALA B 371 LEU B 384 1 14 SHEET 1 AA1 8 TYR A 212 VAL A 214 0 SHEET 2 AA1 8 ARG A 177 ILE A 180 1 N ILE A 180 O GLY A 213 SHEET 3 AA1 8 THR A 133 ALA A 136 1 N TYR A 134 O ARG A 177 SHEET 4 AA1 8 LYS A 85 THR A 90 1 N ALA A 89 O VAL A 135 SHEET 5 AA1 8 GLY A 50 HIS A 54 1 N VAL A 51 O LYS A 85 SHEET 6 AA1 8 PHE A 11 GLY A 14 1 N PHE A 13 O THR A 52 SHEET 7 AA1 8 ARG A 284 PHE A 286 1 O PHE A 286 N THR A 12 SHEET 8 AA1 8 ASP A 245 LEU A 246 1 N LEU A 246 O HIS A 285 SHEET 1 AA2 2 GLY A 142 ALA A 143 0 SHEET 2 AA2 2 ASP A 190 ILE A 191 -1 O ASP A 190 N ALA A 143 SHEET 1 AA3 8 TYR B 212 VAL B 214 0 SHEET 2 AA3 8 ARG B 177 ILE B 180 1 N ILE B 180 O GLY B 213 SHEET 3 AA3 8 THR B 133 ALA B 136 1 N TYR B 134 O ARG B 177 SHEET 4 AA3 8 LYS B 85 THR B 90 1 N ALA B 89 O VAL B 135 SHEET 5 AA3 8 GLY B 50 HIS B 54 1 N VAL B 51 O LYS B 85 SHEET 6 AA3 8 PHE B 11 GLY B 14 1 N PHE B 13 O THR B 52 SHEET 7 AA3 8 ARG B 284 PHE B 286 1 O PHE B 286 N THR B 12 SHEET 8 AA3 8 ASP B 245 LEU B 246 1 N LEU B 246 O HIS B 285 SHEET 1 AA4 2 GLY B 142 ALA B 143 0 SHEET 2 AA4 2 ASP B 190 ILE B 191 -1 O ASP B 190 N ALA B 143 CISPEP 1 GLU A 186 PRO A 187 0 18.68 CISPEP 2 GLU B 186 PRO B 187 0 16.70 SITE 1 AC1 7 HIS A 230 GLN A 234 HOH A 648 LEU B 193 SITE 2 AC1 7 PRO B 194 HIS B 198 HOH B 821 SITE 1 AC2 7 PRO A 97 VAL A 98 LYS A 100 ASP A 108 SITE 2 AC2 7 ALA B 365 ARG B 368 MET B 370 SITE 1 AC3 3 ARG A 23 ASP A 28 ALA A 29 SITE 1 AC4 6 GLU A 128 LEU A 129 GLN A 327 ARG A 331 SITE 2 AC4 6 HOH A 572 HOH A 663 SITE 1 AC5 9 LEU A 93 GLY A 103 PHE A 104 ALA A 136 SITE 2 AC5 9 TRP A 137 GLY A 138 GLU A 141 HOH A 678 SITE 3 AC5 9 HOH A 679 SITE 1 AC6 3 ASP A 295 PHE A 296 ASP A 297 SITE 1 AC7 8 GLU A 8 ASP A 353 SER A 355 ALA A 356 SITE 2 AC7 8 HOH A 535 ARG B 109 ASP B 110 ARG B 113 SITE 1 AC8 7 ASP A 9 GLU A 276 ARG A 284 TYR A 310 SITE 2 AC8 7 LYS A 314 HOH A 509 HOH A 742 SITE 1 AC9 5 HIS A 54 ASP A 57 ASN A 92 THR A 95 SITE 2 AC9 5 HOH A 655 SITE 1 AD1 3 ARG A 205 HOH A 575 TRP B 237 SITE 1 AD2 5 ASP A 150 ARG A 152 EDO A 412 EDO A 413 SITE 2 AD2 5 SER B 277 SITE 1 AD3 4 GLY A 146 GLY A 147 EDO A 411 ARG B 321 SITE 1 AD4 7 LYS A 149 ASP A 150 VAL A 151 EDO A 411 SITE 2 AD4 7 HOH A 511 PRO B 229 HIS B 230 SITE 1 AD5 7 ALA A 365 ARG A 368 MET A 370 PRO B 97 SITE 2 AD5 7 VAL B 98 LYS B 100 ASP B 108 SITE 1 AD6 6 PRO A 229 HIS A 230 LYS B 149 VAL B 151 SITE 2 AD6 6 HOH B 922 HOH B 934 SITE 1 AD7 3 TRP A 237 ARG B 205 HOH B 707 SITE 1 AD8 8 ASP B 9 GLU B 276 ARG B 284 TYR B 310 SITE 2 AD8 8 LYS B 314 HOH B 717 HOH B 719 HOH B 933 SITE 1 AD9 4 TRP B 20 GLN B 21 GLY B 22 ARG B 23 SITE 1 AE1 10 LEU B 93 GLY B 103 PHE B 104 ALA B 136 SITE 2 AE1 10 TRP B 137 GLY B 138 GLU B 141 MET B 158 SITE 3 AE1 10 HOH B 783 HOH B 916 SITE 1 AE2 5 ARG A 321 LEU A 330 GLY B 146 GLY B 147 SITE 2 AE2 5 LYS B 149 SITE 1 AE3 7 ARG A 113 THR B 6 GLU B 8 ASP B 353 SITE 2 AE3 7 SER B 355 ALA B 356 HOH B 703 SITE 1 AE4 4 ARG B 42 GLU B 45 TRP B 300 HOH B 940 SITE 1 AE5 7 LYS A 100 THR B 30 ARG B 292 GLU B 294 SITE 2 AE5 7 ASP B 295 ALA B 367 HOH B 704 CRYST1 86.288 93.009 98.914 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010110 0.00000