HEADER TRANSFERASE 05-AUG-20 7COV TITLE POTATO D-ENZYME, NATIVE (SUBSTRATE FREE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-ALPHA-GLUCANOTRANSFERASE, CHLOROPLASTIC/AMYLOPLASTIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMYLOMALTASE,DISPROPORTIONATING ENZYME,D-ENZYME; COMPND 5 EC: 2.4.1.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; SOURCE 3 ORGANISM_COMMON: POTATO; SOURCE 4 ORGANISM_TAXID: 4113; SOURCE 5 GENE: DPEP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS D-ENZYME, DISPROPORTIONATING ENZYME, POTATO, CYCLOAMYLOSE, SOLANUM KEYWDS 2 TUBEROSUM, PLANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.UNNO,K.IMAMURA REVDAT 3 27-MAR-24 7COV 1 REMARK REVDAT 2 30-DEC-20 7COV 1 JRNL REVDAT 1 26-AUG-20 7COV 0 JRNL AUTH K.IMAMURA,T.MATSUURA,A.NAKAGAWA,S.KITAMURA,M.KUSUNOKI, JRNL AUTH 2 T.TAKAHA,H.UNNO JRNL TITL STRUCTURAL ANALYSIS AND REACTION MECHANISM OF THE JRNL TITL 2 DISPROPORTIONATING ENZYME (D-ENZYME) FROM POTATO. JRNL REF PROTEIN SCI. V. 29 2085 2020 JRNL REFN ESSN 1469-896X JRNL PMID 32808707 JRNL DOI 10.1002/PRO.3932 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 49547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.052 REMARK 3 FREE R VALUE TEST SET COUNT : 2503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 605 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00300 REMARK 3 B22 (A**2) : 0.00500 REMARK 3 B33 (A**2) : -0.00200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4387 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4023 ; 0.034 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5941 ; 1.803 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9357 ; 2.474 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 522 ; 6.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;33.442 ;22.449 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 726 ;13.773 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4870 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 940 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1002 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 72 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2195 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 507 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2097 ; 3.034 ; 2.507 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2090 ; 3.000 ; 2.507 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2612 ; 4.365 ; 3.745 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2613 ; 4.366 ; 3.746 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2290 ; 3.760 ; 2.905 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2291 ; 3.759 ; 2.907 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3329 ; 5.758 ; 4.183 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3330 ; 5.757 ; 4.185 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7COV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300017991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49562 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 100 MM HEPES (PH 7.6), REMARK 280 100 MM CACL2, VAPOR DIFFUSION, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.93450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.26750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.93450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.26750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.19050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.93450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.26750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.19050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.93450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.26750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.19050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -51 REMARK 465 ALA A -50 REMARK 465 ILE A -49 REMARK 465 HIS A -48 REMARK 465 THR A -47 REMARK 465 CYS A -46 REMARK 465 PHE A -45 REMARK 465 SER A -44 REMARK 465 LEU A -43 REMARK 465 ILE A -42 REMARK 465 PRO A -41 REMARK 465 SER A -40 REMARK 465 SER A -39 REMARK 465 PHE A -38 REMARK 465 SER A -37 REMARK 465 SER A -36 REMARK 465 PRO A -35 REMARK 465 LYS A -34 REMARK 465 LEU A -33 REMARK 465 PRO A -32 REMARK 465 TYR A -31 REMARK 465 PRO A -30 REMARK 465 LYS A -29 REMARK 465 ASN A -28 REMARK 465 THR A -27 REMARK 465 THR A -26 REMARK 465 PHE A -25 REMARK 465 GLN A -24 REMARK 465 SER A -23 REMARK 465 PRO A -22 REMARK 465 ILE A -21 REMARK 465 PRO A -20 REMARK 465 LYS A -19 REMARK 465 LEU A -18 REMARK 465 SER A -17 REMARK 465 ARG A -16 REMARK 465 PRO A -15 REMARK 465 THR A -14 REMARK 465 PHE A -13 REMARK 465 MET A -12 REMARK 465 PHE A -11 REMARK 465 ASP A -10 REMARK 465 ARG A -9 REMARK 465 LYS A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 ASN A -3 REMARK 465 GLY A -2 REMARK 465 THR A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 451 CB GLU A 451 CG 0.135 REMARK 500 PRO A 487 N PRO A 487 CA 0.221 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 194 CB - CG - CD ANGL. DEV. = 22.4 DEGREES REMARK 500 ARG A 194 CB - CG - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 GLU A 451 CA - CB - CG ANGL. DEV. = 22.7 DEGREES REMARK 500 PRO A 487 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO A 487 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 -178.06 -66.35 REMARK 500 LEU A 46 32.20 -89.16 REMARK 500 ASP A 80 107.46 -45.48 REMARK 500 PRO A 116 127.39 -35.08 REMARK 500 SER A 280 52.84 33.88 REMARK 500 GLU A 281 -78.10 56.98 REMARK 500 SER A 398 -111.74 -128.76 REMARK 500 THR A 419 -168.06 -102.73 REMARK 500 LEU A 444 36.69 -85.30 REMARK 500 PRO A 487 -34.50 -36.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 180 OD1 REMARK 620 2 HOH A2122 O 87.7 REMARK 620 3 HOH A2151 O 172.3 88.6 REMARK 620 4 HOH A2307 O 89.4 147.8 90.2 REMARK 620 5 HOH A2440 O 84.2 134.3 103.2 77.1 REMARK 620 6 HOH A2462 O 90.3 77.0 82.3 71.0 147.6 REMARK 620 7 HOH A2561 O 88.4 75.1 97.2 136.9 59.8 152.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X1N RELATED DB: PDB DBREF 7COV A -51 524 UNP Q06801 DPEP_SOLTU 1 576 SEQRES 1 A 576 MET ALA ILE HIS THR CYS PHE SER LEU ILE PRO SER SER SEQRES 2 A 576 PHE SER SER PRO LYS LEU PRO TYR PRO LYS ASN THR THR SEQRES 3 A 576 PHE GLN SER PRO ILE PRO LYS LEU SER ARG PRO THR PHE SEQRES 4 A 576 MET PHE ASP ARG LYS GLY SER PHE GLN ASN GLY THR ALA SEQRES 5 A 576 ALA VAL PRO ALA VAL GLY GLU ASP PHE PRO ILE ASP TYR SEQRES 6 A 576 ALA ASP TRP LEU PRO LYS ARG ASP PRO ASN ASP ARG ARG SEQRES 7 A 576 ARG ALA GLY ILE LEU LEU HIS PRO THR SER PHE PRO GLY SEQRES 8 A 576 PRO TYR GLY ILE GLY ASP LEU GLY PRO GLN ALA PHE LYS SEQRES 9 A 576 PHE LEU ASP TRP LEU HIS LEU ALA GLY CYS SER LEU TRP SEQRES 10 A 576 GLN VAL LEU PRO LEU VAL PRO PRO GLY LYS ARG GLY ASN SEQRES 11 A 576 GLU ASP GLY SER PRO TYR SER GLY GLN ASP ALA ASN CYS SEQRES 12 A 576 GLY ASN THR LEU LEU ILE SER LEU GLU GLU LEU VAL ASP SEQRES 13 A 576 ASP GLY LEU LEU LYS MET GLU GLU LEU PRO GLU PRO LEU SEQRES 14 A 576 PRO THR ASP ARG VAL ASN TYR SER THR ILE SER GLU ILE SEQRES 15 A 576 LYS ASP PRO LEU ILE THR LYS ALA ALA LYS ARG LEU LEU SEQRES 16 A 576 SER SER GLU GLY GLU LEU LYS ASP GLN LEU GLU ASN PHE SEQRES 17 A 576 ARG ARG ASP PRO ASN ILE SER SER TRP LEU GLU ASP ALA SEQRES 18 A 576 ALA TYR PHE ALA ALA ILE ASP ASN SER VAL ASN THR ILE SEQRES 19 A 576 SER TRP TYR ASP TRP PRO GLU PRO LEU LYS ASN ARG HIS SEQRES 20 A 576 LEU ALA ALA LEU GLU GLU VAL TYR GLN SER GLU LYS ASP SEQRES 21 A 576 PHE ILE ASP ILE PHE ILE ALA GLN GLN PHE LEU PHE GLN SEQRES 22 A 576 ARG GLN TRP LYS LYS VAL ARG ASP TYR ALA ARG SER LYS SEQRES 23 A 576 GLY ILE SER ILE MET GLY ASP MET PRO ILE TYR VAL GLY SEQRES 24 A 576 TYR HIS SER ALA ASP VAL TRP ALA ASN LYS LYS GLN PHE SEQRES 25 A 576 LEU LEU ASN ARG LYS GLY PHE PRO LEU ILE VAL SER GLY SEQRES 26 A 576 VAL PRO PRO ASP ALA PHE SER GLU THR GLY GLN LEU TRP SEQRES 27 A 576 GLY SER PRO LEU TYR ASP TRP LYS ALA MET GLU LYS ASP SEQRES 28 A 576 GLY PHE SER TRP TRP VAL ARG ARG ILE GLN ARG ALA THR SEQRES 29 A 576 ASP LEU PHE ASP GLU PHE ARG ILE ASP HIS PHE ARG GLY SEQRES 30 A 576 PHE ALA GLY PHE TRP ALA VAL PRO SER GLU GLU LYS ILE SEQRES 31 A 576 ALA ILE LEU GLY ARG TRP LYS VAL GLY PRO GLY LYS PRO SEQRES 32 A 576 LEU PHE ASP ALA ILE LEU GLN ALA VAL GLY LYS ILE ASN SEQRES 33 A 576 ILE ILE ALA GLU ASP LEU GLY VAL ILE THR GLU ASP VAL SEQRES 34 A 576 VAL GLN LEU ARG LYS SER ILE GLU ALA PRO GLY MET ALA SEQRES 35 A 576 VAL LEU GLN PHE ALA PHE GLY SER ASP ALA GLU ASN PRO SEQRES 36 A 576 HIS LEU PRO HIS ASN HIS GLU GLN ASN GLN VAL VAL TYR SEQRES 37 A 576 THR GLY THR HIS ASP ASN ASP THR ILE ARG GLY TRP TRP SEQRES 38 A 576 ASP THR LEU PRO GLN GLU GLU LYS SER ASN VAL LEU LYS SEQRES 39 A 576 TYR LEU SER ASN ILE GLU GLU GLU GLU ILE SER ARG GLY SEQRES 40 A 576 LEU ILE GLU GLY ALA VAL SER SER VAL ALA ARG ILE ALA SEQRES 41 A 576 ILE ILE PRO MET GLN ASP VAL LEU GLY LEU GLY SER ASP SEQRES 42 A 576 SER ARG MET ASN ILE PRO ALA THR GLN PHE GLY ASN TRP SEQRES 43 A 576 SER TRP ARG ILE PRO SER SER THR SER PHE ASP ASN LEU SEQRES 44 A 576 ASP ALA GLU ALA LYS LYS LEU ARG ASP ILE LEU ALA THR SEQRES 45 A 576 TYR GLY ARG LEU HET CA A2001 1 HET GOL A2002 6 HET GOL A2003 6 HET GOL A2004 6 HET GOL A2005 6 HET GOL A2006 6 HET GOL A2007 6 HET GOL A2008 6 HET GOL A2009 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *605(H2 O) HELIX 1 AA1 ASP A 12 TRP A 16 5 5 HELIX 2 AA2 ASP A 21 ARG A 25 5 5 HELIX 3 AA3 HIS A 33 PHE A 37 5 5 HELIX 4 AA4 GLY A 47 ALA A 60 1 14 HELIX 5 AA5 ASN A 93 ILE A 97 5 5 HELIX 6 AA6 SER A 98 ASP A 105 1 8 HELIX 7 AA7 LYS A 109 LEU A 113 5 5 HELIX 8 AA8 THR A 126 SER A 145 1 20 HELIX 9 AA9 GLY A 147 ARG A 158 1 12 HELIX 10 AB1 ASP A 159 ASN A 180 1 22 HELIX 11 AB2 SER A 183 TRP A 187 5 5 HELIX 12 AB3 PRO A 188 ASN A 193 1 6 HELIX 13 AB4 HIS A 195 GLU A 206 1 12 HELIX 14 AB5 GLU A 206 LYS A 234 1 29 HELIX 15 AB6 SER A 250 ALA A 255 1 6 HELIX 16 AB7 ASN A 256 PHE A 260 5 5 HELIX 17 AB8 ASP A 292 ASP A 299 1 8 HELIX 18 AB9 PHE A 301 PHE A 315 1 15 HELIX 19 AC1 HIS A 322 PHE A 326 5 5 HELIX 20 AC2 GLY A 349 GLY A 361 1 13 HELIX 21 AC3 THR A 374 ILE A 384 1 11 HELIX 22 AC4 GLN A 393 ALA A 395 5 3 HELIX 23 AC5 LEU A 405 HIS A 409 5 5 HELIX 24 AC6 THR A 424 THR A 431 1 8 HELIX 25 AC7 PRO A 433 LEU A 444 1 12 HELIX 26 AC8 GLU A 448 GLU A 450 5 3 HELIX 27 AC9 GLU A 451 SER A 462 1 12 HELIX 28 AD1 MET A 472 LEU A 476 1 5 HELIX 29 AD2 GLY A 479 ARG A 483 5 5 HELIX 30 AD3 SER A 503 ASN A 506 5 4 HELIX 31 AD4 LEU A 507 TYR A 521 1 15 SHEET 1 AA1 8 ASN A 364 ALA A 367 0 SHEET 2 AA1 8 GLU A 317 ASP A 321 1 N PHE A 318 O ILE A 366 SHEET 3 AA1 8 SER A 237 PRO A 243 1 N GLY A 240 O GLU A 317 SHEET 4 AA1 8 LEU A 64 GLN A 66 1 N TRP A 65 O MET A 239 SHEET 5 AA1 8 ARG A 27 LEU A 31 1 N ILE A 30 O GLN A 66 SHEET 6 AA1 8 ILE A 467 PRO A 471 1 O ALA A 468 N GLY A 29 SHEET 7 AA1 8 GLN A 413 TYR A 416 1 N VAL A 415 O ILE A 467 SHEET 8 AA1 8 GLY A 388 VAL A 391 1 N ALA A 390 O TYR A 416 SHEET 1 AA2 3 ILE A 270 GLY A 273 0 SHEET 2 AA2 3 GLY A 328 PRO A 333 -1 O VAL A 332 N VAL A 271 SHEET 3 AA2 3 ARG A 343 VAL A 346 -1 O LYS A 345 N PHE A 329 LINK OD1 ASN A 180 CA CA A2001 1555 1555 2.26 LINK CA CA A2001 O HOH A2122 1555 8455 2.48 LINK CA CA A2001 O HOH A2151 1555 1555 2.39 LINK CA CA A2001 O HOH A2307 1555 1555 2.47 LINK CA CA A2001 O HOH A2440 1555 1555 2.48 LINK CA CA A2001 O HOH A2462 1555 8455 2.49 LINK CA CA A2001 O HOH A2561 1555 1555 2.46 CRYST1 69.869 120.535 174.381 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014312 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005735 0.00000