HEADER TRANSFERASE 05-AUG-20 7COZ TITLE CRYSTAL STRUCTURE OF DOUBLE MUTANT Y115E Y117E HUMAN SECRETORY TITLE 2 GLUTAMINYL CYCLASE IN COMPLEX WITH LSB-41 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: GLUTAMINYL CYCLASE,SQC,GLUTAMINYL-TRNA CYCLOTRANSFERASE, COMPND 5 GLUTAMYL CYCLASE,EC; COMPND 6 EC: 2.3.2.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CPD-41 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: QPCT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE, SQC, ALZHEIMER'S DISEASE, KEYWDS 2 PYROGLUTAMATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.V.DILEEP,K.IHARA,N.SAKAI,M.SHIROZU,K.Y.J.ZHANG REVDAT 3 29-NOV-23 7COZ 1 REMARK REVDAT 2 20-JAN-21 7COZ 1 JRNL REVDAT 1 13-JAN-21 7COZ 0 JRNL AUTH K.V.DILEEP,N.SAKAI,K.IHARA,M.KATO-MURAYAMA,A.NAKATA,A.ITO, JRNL AUTH 2 D.M.SIVARAMAN,J.W.SHIN,M.YOSHIDA,M.SHIROUZU,K.Y.J.ZHANG JRNL TITL PIPERIDINE-4-CARBOXAMIDE AS A NEW SCAFFOLD FOR DESIGNING JRNL TITL 2 SECRETORY GLUTAMINYL CYCLASE INHIBITORS. JRNL REF INT.J.BIOL.MACROMOL. V. 170 415 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 33373636 JRNL DOI 10.1016/J.IJBIOMAC.2020.12.118 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 101696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5289 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2557 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3285 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 776 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.230 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7COZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300017948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 43.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 4YWY REMARK 200 REMARK 200 REMARK: HEXAGONAL PLATE LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES BUFFER PH 6.0-6.5, 46-67 MM REMARK 280 NAOH, 100 MM AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.11450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.68300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.11450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 74.68300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 720 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 746 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 757 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 188 REMARK 465 LYS B 188 REMARK 465 LYS C 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 TRP A 149 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 149 CZ3 CH2 REMARK 470 ASN A 150 CG OD1 ND2 REMARK 470 ASN A 151 CG OD1 ND2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 ASP A 186 CG OD1 OD2 REMARK 470 HIS A 206 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 233 CZ NH1 NH2 REMARK 470 LEU A 289 CG CD1 CD2 REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLU B 64 OE1 OE2 REMARK 470 GLN B 93 CG CD OE1 NE2 REMARK 470 TRP B 149 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 149 CZ3 CH2 REMARK 470 ASN B 150 CG OD1 ND2 REMARK 470 ASN B 151 CG OD1 ND2 REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 ASP B 186 CG OD1 OD2 REMARK 470 HIS B 206 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 233 CZ NH1 NH2 REMARK 470 LEU B 289 CG CD1 CD2 REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 GLN C 93 CG CD OE1 NE2 REMARK 470 TRP C 149 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 149 CZ3 CH2 REMARK 470 ASN C 150 CG OD1 ND2 REMARK 470 ASN C 151 CG OD1 ND2 REMARK 470 LYS C 176 CG CD CE NZ REMARK 470 ASP C 186 CG OD1 OD2 REMARK 470 HIS C 206 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 289 CG CD1 CD2 REMARK 470 GLU C 337 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 115 CB PHE C 204 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 77 44.57 -149.13 REMARK 500 LEU A 205 -100.13 -116.93 REMARK 500 SER A 212 165.44 176.68 REMARK 500 SER A 298 -158.26 -102.18 REMARK 500 SER A 298 -159.67 -100.24 REMARK 500 ARG B 77 44.88 -151.22 REMARK 500 ASN B 150 -120.30 57.90 REMARK 500 SER B 192 -159.59 -147.21 REMARK 500 LEU B 205 -84.64 -120.49 REMARK 500 SER B 298 -159.60 -105.11 REMARK 500 SER B 298 -159.87 -104.75 REMARK 500 ARG C 77 44.67 -148.83 REMARK 500 ASN C 150 -119.51 50.09 REMARK 500 LEU C 205 -85.96 -119.01 REMARK 500 ASP C 211 69.22 -118.65 REMARK 500 SER C 212 158.99 179.10 REMARK 500 SER C 298 -154.19 -102.53 REMARK 500 SER C 298 -153.52 -103.37 REMARK 500 ASP C 305 -179.75 -170.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 759 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B 750 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 751 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH C 761 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH C 762 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH C 763 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH C 764 DISTANCE = 7.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 159 OD2 REMARK 620 2 GLU A 202 OE2 104.1 REMARK 620 3 HIS A 330 NE2 109.6 123.5 REMARK 620 4 Q39 A 402 O1 104.0 111.4 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 159 OD2 REMARK 620 2 GLU B 202 OE2 103.0 REMARK 620 3 HIS B 330 NE2 108.1 123.7 REMARK 620 4 Q39 B 402 O1 110.0 114.8 97.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 159 OD2 REMARK 620 2 GLU C 202 OE2 102.5 REMARK 620 3 HIS C 330 NE2 108.2 125.8 REMARK 620 4 Q39 C 404 O1 109.2 113.7 96.8 REMARK 620 N 1 2 3 DBREF 7COZ A 35 361 UNP Q16769 QPCT_HUMAN 35 361 DBREF 7COZ B 35 361 UNP Q16769 QPCT_HUMAN 35 361 DBREF 7COZ C 35 361 UNP Q16769 QPCT_HUMAN 35 361 SEQADV 7COZ GLU A 115 UNP Q16769 TYR 115 ENGINEERED MUTATION SEQADV 7COZ GLU A 117 UNP Q16769 TYR 117 ENGINEERED MUTATION SEQADV 7COZ GLU B 115 UNP Q16769 TYR 115 ENGINEERED MUTATION SEQADV 7COZ GLU B 117 UNP Q16769 TYR 117 ENGINEERED MUTATION SEQADV 7COZ GLU C 115 UNP Q16769 TYR 115 ENGINEERED MUTATION SEQADV 7COZ GLU C 117 UNP Q16769 TYR 117 ENGINEERED MUTATION SEQRES 1 A 327 ALA TRP PRO GLU GLU LYS ASN TYR HIS GLN PRO ALA ILE SEQRES 2 A 327 LEU ASN SER SER ALA LEU ARG GLN ILE ALA GLU GLY THR SEQRES 3 A 327 SER ILE SER GLU MET TRP GLN ASN ASP LEU GLN PRO LEU SEQRES 4 A 327 LEU ILE GLU ARG TYR PRO GLY SER PRO GLY SER TYR ALA SEQRES 5 A 327 ALA ARG GLN HIS ILE MET GLN ARG ILE GLN ARG LEU GLN SEQRES 6 A 327 ALA ASP TRP VAL LEU GLU ILE ASP THR PHE LEU SER GLN SEQRES 7 A 327 THR PRO GLU GLY GLU ARG SER PHE SER ASN ILE ILE SER SEQRES 8 A 327 THR LEU ASN PRO THR ALA LYS ARG HIS LEU VAL LEU ALA SEQRES 9 A 327 CYS HIS TYR ASP SER LYS TYR PHE SER HIS TRP ASN ASN SEQRES 10 A 327 ARG VAL PHE VAL GLY ALA THR ASP SER ALA VAL PRO CYS SEQRES 11 A 327 ALA MET MET LEU GLU LEU ALA ARG ALA LEU ASP LYS LYS SEQRES 12 A 327 LEU LEU SER LEU LYS THR VAL SER ASP SER LYS PRO ASP SEQRES 13 A 327 LEU SER LEU GLN LEU ILE PHE PHE ASP GLY GLU GLU ALA SEQRES 14 A 327 PHE LEU HIS TRP SER PRO GLN ASP SER LEU TYR GLY SER SEQRES 15 A 327 ARG HIS LEU ALA ALA LYS MET ALA SER THR PRO HIS PRO SEQRES 16 A 327 PRO GLY ALA ARG GLY THR SER GLN LEU HIS GLY MET ASP SEQRES 17 A 327 LEU LEU VAL LEU LEU ASP LEU ILE GLY ALA PRO ASN PRO SEQRES 18 A 327 THR PHE PRO ASN PHE PHE PRO ASN SER ALA ARG TRP PHE SEQRES 19 A 327 GLU ARG LEU GLN ALA ILE GLU HIS GLU LEU HIS GLU LEU SEQRES 20 A 327 GLY LEU LEU LYS ASP HIS SER LEU GLU GLY ARG TYR PHE SEQRES 21 A 327 GLN ASN TYR SER TYR GLY GLY VAL ILE GLN ASP ASP HIS SEQRES 22 A 327 ILE PRO PHE LEU ARG ARG GLY VAL PRO VAL LEU HIS LEU SEQRES 23 A 327 ILE PRO SER PRO PHE PRO GLU VAL TRP HIS THR MET ASP SEQRES 24 A 327 ASP ASN GLU GLU ASN LEU ASP GLU SER THR ILE ASP ASN SEQRES 25 A 327 LEU ASN LYS ILE LEU GLN VAL PHE VAL LEU GLU TYR LEU SEQRES 26 A 327 HIS LEU SEQRES 1 B 327 ALA TRP PRO GLU GLU LYS ASN TYR HIS GLN PRO ALA ILE SEQRES 2 B 327 LEU ASN SER SER ALA LEU ARG GLN ILE ALA GLU GLY THR SEQRES 3 B 327 SER ILE SER GLU MET TRP GLN ASN ASP LEU GLN PRO LEU SEQRES 4 B 327 LEU ILE GLU ARG TYR PRO GLY SER PRO GLY SER TYR ALA SEQRES 5 B 327 ALA ARG GLN HIS ILE MET GLN ARG ILE GLN ARG LEU GLN SEQRES 6 B 327 ALA ASP TRP VAL LEU GLU ILE ASP THR PHE LEU SER GLN SEQRES 7 B 327 THR PRO GLU GLY GLU ARG SER PHE SER ASN ILE ILE SER SEQRES 8 B 327 THR LEU ASN PRO THR ALA LYS ARG HIS LEU VAL LEU ALA SEQRES 9 B 327 CYS HIS TYR ASP SER LYS TYR PHE SER HIS TRP ASN ASN SEQRES 10 B 327 ARG VAL PHE VAL GLY ALA THR ASP SER ALA VAL PRO CYS SEQRES 11 B 327 ALA MET MET LEU GLU LEU ALA ARG ALA LEU ASP LYS LYS SEQRES 12 B 327 LEU LEU SER LEU LYS THR VAL SER ASP SER LYS PRO ASP SEQRES 13 B 327 LEU SER LEU GLN LEU ILE PHE PHE ASP GLY GLU GLU ALA SEQRES 14 B 327 PHE LEU HIS TRP SER PRO GLN ASP SER LEU TYR GLY SER SEQRES 15 B 327 ARG HIS LEU ALA ALA LYS MET ALA SER THR PRO HIS PRO SEQRES 16 B 327 PRO GLY ALA ARG GLY THR SER GLN LEU HIS GLY MET ASP SEQRES 17 B 327 LEU LEU VAL LEU LEU ASP LEU ILE GLY ALA PRO ASN PRO SEQRES 18 B 327 THR PHE PRO ASN PHE PHE PRO ASN SER ALA ARG TRP PHE SEQRES 19 B 327 GLU ARG LEU GLN ALA ILE GLU HIS GLU LEU HIS GLU LEU SEQRES 20 B 327 GLY LEU LEU LYS ASP HIS SER LEU GLU GLY ARG TYR PHE SEQRES 21 B 327 GLN ASN TYR SER TYR GLY GLY VAL ILE GLN ASP ASP HIS SEQRES 22 B 327 ILE PRO PHE LEU ARG ARG GLY VAL PRO VAL LEU HIS LEU SEQRES 23 B 327 ILE PRO SER PRO PHE PRO GLU VAL TRP HIS THR MET ASP SEQRES 24 B 327 ASP ASN GLU GLU ASN LEU ASP GLU SER THR ILE ASP ASN SEQRES 25 B 327 LEU ASN LYS ILE LEU GLN VAL PHE VAL LEU GLU TYR LEU SEQRES 26 B 327 HIS LEU SEQRES 1 C 327 ALA TRP PRO GLU GLU LYS ASN TYR HIS GLN PRO ALA ILE SEQRES 2 C 327 LEU ASN SER SER ALA LEU ARG GLN ILE ALA GLU GLY THR SEQRES 3 C 327 SER ILE SER GLU MET TRP GLN ASN ASP LEU GLN PRO LEU SEQRES 4 C 327 LEU ILE GLU ARG TYR PRO GLY SER PRO GLY SER TYR ALA SEQRES 5 C 327 ALA ARG GLN HIS ILE MET GLN ARG ILE GLN ARG LEU GLN SEQRES 6 C 327 ALA ASP TRP VAL LEU GLU ILE ASP THR PHE LEU SER GLN SEQRES 7 C 327 THR PRO GLU GLY GLU ARG SER PHE SER ASN ILE ILE SER SEQRES 8 C 327 THR LEU ASN PRO THR ALA LYS ARG HIS LEU VAL LEU ALA SEQRES 9 C 327 CYS HIS TYR ASP SER LYS TYR PHE SER HIS TRP ASN ASN SEQRES 10 C 327 ARG VAL PHE VAL GLY ALA THR ASP SER ALA VAL PRO CYS SEQRES 11 C 327 ALA MET MET LEU GLU LEU ALA ARG ALA LEU ASP LYS LYS SEQRES 12 C 327 LEU LEU SER LEU LYS THR VAL SER ASP SER LYS PRO ASP SEQRES 13 C 327 LEU SER LEU GLN LEU ILE PHE PHE ASP GLY GLU GLU ALA SEQRES 14 C 327 PHE LEU HIS TRP SER PRO GLN ASP SER LEU TYR GLY SER SEQRES 15 C 327 ARG HIS LEU ALA ALA LYS MET ALA SER THR PRO HIS PRO SEQRES 16 C 327 PRO GLY ALA ARG GLY THR SER GLN LEU HIS GLY MET ASP SEQRES 17 C 327 LEU LEU VAL LEU LEU ASP LEU ILE GLY ALA PRO ASN PRO SEQRES 18 C 327 THR PHE PRO ASN PHE PHE PRO ASN SER ALA ARG TRP PHE SEQRES 19 C 327 GLU ARG LEU GLN ALA ILE GLU HIS GLU LEU HIS GLU LEU SEQRES 20 C 327 GLY LEU LEU LYS ASP HIS SER LEU GLU GLY ARG TYR PHE SEQRES 21 C 327 GLN ASN TYR SER TYR GLY GLY VAL ILE GLN ASP ASP HIS SEQRES 22 C 327 ILE PRO PHE LEU ARG ARG GLY VAL PRO VAL LEU HIS LEU SEQRES 23 C 327 ILE PRO SER PRO PHE PRO GLU VAL TRP HIS THR MET ASP SEQRES 24 C 327 ASP ASN GLU GLU ASN LEU ASP GLU SER THR ILE ASP ASN SEQRES 25 C 327 LEU ASN LYS ILE LEU GLN VAL PHE VAL LEU GLU TYR LEU SEQRES 26 C 327 HIS LEU HET ZN A 400 1 HET SO4 A 401 5 HET Q39 A 402 24 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET ZN B 400 1 HET SO4 B 401 5 HET Q39 B 402 24 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET EDO B 407 4 HET EDO B 408 4 HET EDO B 409 4 HET EDO C 401 4 HET ZN C 402 1 HET SO4 C 403 5 HET Q39 C 404 24 HET EDO C 405 4 HET EDO C 406 4 HET EDO C 407 4 HET EDO C 408 4 HET EDO C 409 4 HET EDO C 410 4 HET EDO C 411 4 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM Q39 1-[3-(2-METHYL-4-THIOPHEN-2-YL-1,3-THIAZOL-5-YL) HETNAM 2 Q39 PROPANOYL]PIPERIDINE-4-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN 3(ZN 2+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 6 Q39 3(C17 H21 N3 O2 S2) FORMUL 7 EDO 21(C2 H6 O2) FORMUL 34 HOH *776(H2 O) HELIX 1 AA1 ALA A 35 PRO A 37 5 3 HELIX 2 AA2 GLU A 38 HIS A 43 1 6 HELIX 3 AA3 ASN A 49 THR A 60 1 12 HELIX 4 AA4 SER A 61 ASP A 69 1 9 HELIX 5 AA5 LEU A 70 LEU A 74 5 5 HELIX 6 AA6 SER A 81 ARG A 97 1 17 HELIX 7 AA7 SER A 160 LEU A 174 1 15 HELIX 8 AA8 LEU A 174 SER A 180 1 7 HELIX 9 AA9 LEU A 181 THR A 183 5 3 HELIX 10 AB1 LEU A 213 THR A 226 1 14 HELIX 11 AB2 SER A 236 GLY A 240 1 5 HELIX 12 AB3 PHE A 261 ASN A 263 5 3 HELIX 13 AB4 SER A 264 LEU A 281 1 18 HELIX 14 AB5 HIS A 307 ARG A 312 1 6 HELIX 15 AB6 ASN A 335 LEU A 339 5 5 HELIX 16 AB7 ASP A 340 HIS A 360 1 21 HELIX 17 AB8 ALA B 35 PRO B 37 5 3 HELIX 18 AB9 GLU B 38 HIS B 43 1 6 HELIX 19 AC1 ASN B 49 THR B 60 1 12 HELIX 20 AC2 SER B 61 ASP B 69 1 9 HELIX 21 AC3 LEU B 70 LEU B 74 5 5 HELIX 22 AC4 SER B 81 ARG B 97 1 17 HELIX 23 AC5 SER B 160 LEU B 174 1 15 HELIX 24 AC6 LEU B 174 SER B 180 1 7 HELIX 25 AC7 LEU B 181 THR B 183 5 3 HELIX 26 AC8 LEU B 213 SER B 225 1 13 HELIX 27 AC9 PHE B 261 ASN B 263 5 3 HELIX 28 AD1 SER B 264 LEU B 281 1 18 HELIX 29 AD2 HIS B 307 ARG B 312 1 6 HELIX 30 AD3 ASN B 335 LEU B 339 5 5 HELIX 31 AD4 ASP B 340 HIS B 360 1 21 HELIX 32 AD5 ALA C 35 PRO C 37 5 3 HELIX 33 AD6 GLU C 38 HIS C 43 1 6 HELIX 34 AD7 ASN C 49 THR C 60 1 12 HELIX 35 AD8 SER C 61 ASP C 69 1 9 HELIX 36 AD9 LEU C 70 LEU C 74 5 5 HELIX 37 AE1 SER C 81 ARG C 97 1 17 HELIX 38 AE2 SER C 160 LEU C 174 1 15 HELIX 39 AE3 LEU C 174 SER C 180 1 7 HELIX 40 AE4 LEU C 181 THR C 183 5 3 HELIX 41 AE5 LEU C 213 SER C 225 1 13 HELIX 42 AE6 SER C 236 GLY C 240 1 5 HELIX 43 AE7 PHE C 261 ASN C 263 5 3 HELIX 44 AE8 SER C 264 LEU C 281 1 18 HELIX 45 AE9 HIS C 307 ARG C 312 1 6 HELIX 46 AF1 ASN C 335 LEU C 339 5 5 HELIX 47 AF2 ASP C 340 HIS C 360 1 21 SHEET 1 AA1 6 VAL A 103 SER A 111 0 SHEET 2 AA1 6 ARG A 118 THR A 126 -1 O ILE A 124 N GLU A 105 SHEET 3 AA1 6 LEU A 191 PHE A 198 -1 O LEU A 195 N SER A 125 SHEET 4 AA1 6 ARG A 133 HIS A 140 1 N CYS A 139 O PHE A 198 SHEET 5 AA1 6 MET A 241 LEU A 247 1 O VAL A 245 N VAL A 136 SHEET 6 AA1 6 VAL A 317 LEU A 320 1 O LEU A 318 N LEU A 244 SHEET 1 AA2 6 VAL B 103 SER B 111 0 SHEET 2 AA2 6 ARG B 118 THR B 126 -1 O ILE B 124 N GLU B 105 SHEET 3 AA2 6 LEU B 191 PHE B 198 -1 O LEU B 195 N SER B 125 SHEET 4 AA2 6 ARG B 133 HIS B 140 1 N CYS B 139 O PHE B 198 SHEET 5 AA2 6 MET B 241 LEU B 247 1 O VAL B 245 N VAL B 136 SHEET 6 AA2 6 VAL B 317 LEU B 320 1 O LEU B 318 N LEU B 244 SHEET 1 AA3 6 VAL C 103 SER C 111 0 SHEET 2 AA3 6 ARG C 118 THR C 126 -1 O ILE C 124 N GLU C 105 SHEET 3 AA3 6 LEU C 191 PHE C 198 -1 O LEU C 195 N SER C 125 SHEET 4 AA3 6 ARG C 133 HIS C 140 1 N CYS C 139 O PHE C 198 SHEET 5 AA3 6 MET C 241 LEU C 247 1 O VAL C 245 N VAL C 136 SHEET 6 AA3 6 VAL C 317 LEU C 320 1 O LEU C 318 N LEU C 244 LINK OD2 ASP A 159 ZN ZN A 400 1555 1555 1.87 LINK OE2 GLU A 202 ZN ZN A 400 1555 1555 1.96 LINK NE2 HIS A 330 ZN ZN A 400 1555 1555 2.10 LINK ZN ZN A 400 O1 Q39 A 402 1555 1555 2.18 LINK OD2 ASP B 159 ZN ZN B 400 1555 1555 1.85 LINK OE2 GLU B 202 ZN ZN B 400 1555 1555 1.93 LINK NE2 HIS B 330 ZN ZN B 400 1555 1555 2.05 LINK ZN ZN B 400 O1 Q39 B 402 1555 1555 2.07 LINK OD2 ASP C 159 ZN ZN C 402 1555 1555 1.95 LINK OE2 GLU C 202 ZN ZN C 402 1555 1555 1.91 LINK NE2 HIS C 330 ZN ZN C 402 1555 1555 2.14 LINK ZN ZN C 402 O1 Q39 C 404 1555 1555 2.15 CISPEP 1 ASP A 159 SER A 160 0 -3.19 CISPEP 2 HIS A 228 PRO A 229 0 -5.46 CISPEP 3 SER A 323 PRO A 324 0 5.06 CISPEP 4 ASP B 159 SER B 160 0 -5.36 CISPEP 5 HIS B 228 PRO B 229 0 -6.16 CISPEP 6 SER B 323 PRO B 324 0 5.79 CISPEP 7 ASP C 159 SER C 160 0 -4.19 CISPEP 8 HIS C 228 PRO C 229 0 -5.26 CISPEP 9 SER C 323 PRO C 324 0 3.40 CRYST1 86.229 149.366 95.377 90.00 97.34 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011597 0.000000 0.001494 0.00000 SCALE2 0.000000 0.006695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010571 0.00000