HEADER TRANSFERASE 10-AUG-20 7CQE TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTO-ONCOGENE TITLE 2 TYROSINE-PROTEIN KINASE MER IN COMPLEX WITH AZD-7762 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE MER; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: PROTO-ONCOGENE C-MER,RECEPTOR TYROSINE KINASE MERTK; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MERTK, MER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSFERASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.H.PARK,B.I.LEE REVDAT 3 29-NOV-23 7CQE 1 REMARK REVDAT 2 11-NOV-20 7CQE 1 JRNL REVDAT 1 04-NOV-20 7CQE 0 JRNL AUTH T.H.PARK,S.H.BAE,S.M.BONG,S.E.RYU,H.JANG,B.I.LEE JRNL TITL CRYSTAL STRUCTURE OF THE KINASE DOMAIN OF MERTK IN COMPLEX JRNL TITL 2 WITH AZD7762 PROVIDES CLUES FOR STRUCTURE-BASED DRUG JRNL TITL 3 DEVELOPMENT. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 33114206 JRNL DOI 10.3390/IJMS21217878 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 14760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1652 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 655 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.264 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4081 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3901 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5511 ; 1.660 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9036 ; 1.264 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 6.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;37.037 ;22.060 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 739 ;18.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.896 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4397 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 840 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 578 861 C 578 861 7544 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17283 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.687 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.333 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MH7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 40MG/ML IN 20MM TRIS-CL, PH REMARK 280 8.0, 500MM SODIUM CHLORIDE, 2MM DTT. INHIBITOR (5 MM FINAL REMARK 280 CONCENTRATION) OVERNIGHT, MIXED 1:1 WITH CRYSTALLIZATION REMARK 280 SOLUTION (100MM TRIS-CL, PH 8.5, 4M SODIUM CHLORIDE), VAPOR REMARK 280 DIFFUSION, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.05900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.60150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.05900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.60150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 571 REMARK 465 GLU A 572 REMARK 465 LEU A 573 REMARK 465 GLN A 574 REMARK 465 ASN A 575 REMARK 465 LYS A 576 REMARK 465 LEU A 577 REMARK 465 GLU A 597 REMARK 465 PHE A 598 REMARK 465 LEU A 623 REMARK 465 ASP A 624 REMARK 465 ASN A 625 REMARK 465 SER A 626 REMARK 465 SER A 627 REMARK 465 GLN A 628 REMARK 465 SER A 660 REMARK 465 SER A 661 REMARK 465 GLN A 662 REMARK 465 GLY A 663 REMARK 465 LEU A 744 REMARK 465 SER A 745 REMARK 465 LYS A 746 REMARK 465 LYS A 747 REMARK 465 ILE A 748 REMARK 465 TYR A 749 REMARK 465 SER A 750 REMARK 465 GLY A 751 REMARK 465 ASP A 752 REMARK 465 TYR A 753 REMARK 465 TYR A 754 REMARK 465 ARG A 755 REMARK 465 GLN A 756 REMARK 465 GLY A 757 REMARK 465 ARG A 758 REMARK 465 ILE A 759 REMARK 465 ALA A 760 REMARK 465 LYS A 761 REMARK 465 MET A 762 REMARK 465 PRO A 862 REMARK 465 ASP A 863 REMARK 465 VAL A 864 REMARK 465 GLU C 571 REMARK 465 GLU C 572 REMARK 465 LEU C 573 REMARK 465 GLN C 574 REMARK 465 ASN C 575 REMARK 465 LYS C 576 REMARK 465 LEU C 577 REMARK 465 GLY C 594 REMARK 465 GLU C 595 REMARK 465 GLY C 596 REMARK 465 GLU C 597 REMARK 465 PHE C 598 REMARK 465 MET C 621 REMARK 465 LYS C 622 REMARK 465 LEU C 623 REMARK 465 ASP C 624 REMARK 465 ASN C 625 REMARK 465 SER C 626 REMARK 465 SER C 627 REMARK 465 GLN C 628 REMARK 465 ARG C 629 REMARK 465 GLU C 630 REMARK 465 ILE C 631 REMARK 465 GLU C 632 REMARK 465 GLU C 633 REMARK 465 GLU C 658 REMARK 465 MET C 659 REMARK 465 SER C 660 REMARK 465 SER C 661 REMARK 465 GLN C 662 REMARK 465 GLY C 663 REMARK 465 ILE C 664 REMARK 465 PRO C 665 REMARK 465 LEU C 744 REMARK 465 SER C 745 REMARK 465 LYS C 746 REMARK 465 LYS C 747 REMARK 465 ILE C 748 REMARK 465 TYR C 749 REMARK 465 SER C 750 REMARK 465 GLY C 751 REMARK 465 ASP C 752 REMARK 465 TYR C 753 REMARK 465 TYR C 754 REMARK 465 ARG C 755 REMARK 465 GLN C 756 REMARK 465 GLY C 757 REMARK 465 ARG C 758 REMARK 465 ILE C 759 REMARK 465 ALA C 760 REMARK 465 LYS C 761 REMARK 465 MET C 762 REMARK 465 PRO C 862 REMARK 465 ASP C 863 REMARK 465 VAL C 864 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 775 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 775 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 722 -1.87 84.53 REMARK 500 ASP A 723 45.59 -155.97 REMARK 500 ALA A 773 -79.48 -66.54 REMARK 500 CYS A 825 127.66 -38.83 REMARK 500 SER A 860 32.22 -98.75 REMARK 500 ARG C 722 6.41 82.96 REMARK 500 ASP C 723 35.93 -159.38 REMARK 500 ALA C 773 -79.44 -64.47 REMARK 500 SER C 860 33.55 -99.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDJ A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDJ C 902 DBREF 7CQE A 571 864 UNP Q12866 MERTK_HUMAN 571 864 DBREF 7CQE C 571 864 UNP Q12866 MERTK_HUMAN 571 864 SEQRES 1 A 294 GLU GLU LEU GLN ASN LYS LEU GLU ASP VAL VAL ILE ASP SEQRES 2 A 294 ARG ASN LEU LEU ILE LEU GLY LYS ILE LEU GLY GLU GLY SEQRES 3 A 294 GLU PHE GLY SER VAL MET GLU GLY ASN LEU LYS GLN GLU SEQRES 4 A 294 ASP GLY THR SER LEU LYS VAL ALA VAL LYS THR MET LYS SEQRES 5 A 294 LEU ASP ASN SER SER GLN ARG GLU ILE GLU GLU PHE LEU SEQRES 6 A 294 SER GLU ALA ALA CYS MET LYS ASP PHE SER HIS PRO ASN SEQRES 7 A 294 VAL ILE ARG LEU LEU GLY VAL CYS ILE GLU MET SER SER SEQRES 8 A 294 GLN GLY ILE PRO LYS PRO MET VAL ILE LEU PRO PHE MET SEQRES 9 A 294 LYS TYR GLY ASP LEU HIS THR TYR LEU LEU TYR SER ARG SEQRES 10 A 294 LEU GLU THR GLY PRO LYS HIS ILE PRO LEU GLN THR LEU SEQRES 11 A 294 LEU LYS PHE MET VAL ASP ILE ALA LEU GLY MET GLU TYR SEQRES 12 A 294 LEU SER ASN ARG ASN PHE LEU HIS ARG ASP LEU ALA ALA SEQRES 13 A 294 ARG ASN CYS MET LEU ARG ASP ASP MET THR VAL CYS VAL SEQRES 14 A 294 ALA ASP PHE GLY LEU SER LYS LYS ILE TYR SER GLY ASP SEQRES 15 A 294 TYR TYR ARG GLN GLY ARG ILE ALA LYS MET PRO VAL LYS SEQRES 16 A 294 TRP ILE ALA ILE GLU SER LEU ALA ASP ARG VAL TYR THR SEQRES 17 A 294 SER LYS SER ASP VAL TRP ALA PHE GLY VAL THR MET TRP SEQRES 18 A 294 GLU ILE ALA THR ARG GLY MET THR PRO TYR PRO GLY VAL SEQRES 19 A 294 GLN ASN HIS GLU MET TYR ASP TYR LEU LEU HIS GLY HIS SEQRES 20 A 294 ARG LEU LYS GLN PRO GLU ASP CYS LEU ASP GLU LEU TYR SEQRES 21 A 294 GLU ILE MET TYR SER CYS TRP ARG THR ASP PRO LEU ASP SEQRES 22 A 294 ARG PRO THR PHE SER VAL LEU ARG LEU GLN LEU GLU LYS SEQRES 23 A 294 LEU LEU GLU SER LEU PRO ASP VAL SEQRES 1 C 294 GLU GLU LEU GLN ASN LYS LEU GLU ASP VAL VAL ILE ASP SEQRES 2 C 294 ARG ASN LEU LEU ILE LEU GLY LYS ILE LEU GLY GLU GLY SEQRES 3 C 294 GLU PHE GLY SER VAL MET GLU GLY ASN LEU LYS GLN GLU SEQRES 4 C 294 ASP GLY THR SER LEU LYS VAL ALA VAL LYS THR MET LYS SEQRES 5 C 294 LEU ASP ASN SER SER GLN ARG GLU ILE GLU GLU PHE LEU SEQRES 6 C 294 SER GLU ALA ALA CYS MET LYS ASP PHE SER HIS PRO ASN SEQRES 7 C 294 VAL ILE ARG LEU LEU GLY VAL CYS ILE GLU MET SER SER SEQRES 8 C 294 GLN GLY ILE PRO LYS PRO MET VAL ILE LEU PRO PHE MET SEQRES 9 C 294 LYS TYR GLY ASP LEU HIS THR TYR LEU LEU TYR SER ARG SEQRES 10 C 294 LEU GLU THR GLY PRO LYS HIS ILE PRO LEU GLN THR LEU SEQRES 11 C 294 LEU LYS PHE MET VAL ASP ILE ALA LEU GLY MET GLU TYR SEQRES 12 C 294 LEU SER ASN ARG ASN PHE LEU HIS ARG ASP LEU ALA ALA SEQRES 13 C 294 ARG ASN CYS MET LEU ARG ASP ASP MET THR VAL CYS VAL SEQRES 14 C 294 ALA ASP PHE GLY LEU SER LYS LYS ILE TYR SER GLY ASP SEQRES 15 C 294 TYR TYR ARG GLN GLY ARG ILE ALA LYS MET PRO VAL LYS SEQRES 16 C 294 TRP ILE ALA ILE GLU SER LEU ALA ASP ARG VAL TYR THR SEQRES 17 C 294 SER LYS SER ASP VAL TRP ALA PHE GLY VAL THR MET TRP SEQRES 18 C 294 GLU ILE ALA THR ARG GLY MET THR PRO TYR PRO GLY VAL SEQRES 19 C 294 GLN ASN HIS GLU MET TYR ASP TYR LEU LEU HIS GLY HIS SEQRES 20 C 294 ARG LEU LYS GLN PRO GLU ASP CYS LEU ASP GLU LEU TYR SEQRES 21 C 294 GLU ILE MET TYR SER CYS TRP ARG THR ASP PRO LEU ASP SEQRES 22 C 294 ARG PRO THR PHE SER VAL LEU ARG LEU GLN LEU GLU LYS SEQRES 23 C 294 LEU LEU GLU SER LEU PRO ASP VAL HET CL A 901 1 HET CL A 902 1 HET CL A 903 1 HET CL A 904 1 HET CL A 905 1 HET YDJ A 906 25 HET CL C 901 1 HET YDJ C 902 25 HETNAM CL CHLORIDE ION HETNAM YDJ 5-(3-FLUOROPHENYL)-N-[(3S)-3-PIPERIDYL]-3-UREIDO- HETNAM 2 YDJ THIOPHENE-2-CARBOXAMIDE FORMUL 3 CL 6(CL 1-) FORMUL 8 YDJ 2(C17 H19 F N4 O2 S) FORMUL 11 HOH *20(H2 O) HELIX 1 AA1 ASP A 583 ASN A 585 5 3 HELIX 2 AA2 GLU A 630 LYS A 642 1 13 HELIX 3 AA3 ASP A 678 ARG A 687 1 10 HELIX 4 AA4 PRO A 696 ARG A 717 1 22 HELIX 5 AA5 ALA A 725 ARG A 727 5 3 HELIX 6 AA6 PRO A 763 ILE A 767 5 5 HELIX 7 AA7 ALA A 768 ARG A 775 1 8 HELIX 8 AA8 THR A 778 THR A 795 1 18 HELIX 9 AA9 GLN A 805 HIS A 807 5 3 HELIX 10 AB1 GLU A 808 HIS A 815 1 8 HELIX 11 AB2 LEU A 826 CYS A 836 1 11 HELIX 12 AB3 ASP A 840 ARG A 844 5 5 HELIX 13 AB4 THR A 846 SER A 860 1 15 HELIX 14 AB5 ASP C 583 ASN C 585 5 3 HELIX 15 AB6 LEU C 635 LYS C 642 1 8 HELIX 16 AB7 ASP C 678 ARG C 687 1 10 HELIX 17 AB8 PRO C 696 ARG C 717 1 22 HELIX 18 AB9 ALA C 725 ARG C 727 5 3 HELIX 19 AC1 PRO C 763 ILE C 767 5 5 HELIX 20 AC2 ALA C 768 ARG C 775 1 8 HELIX 21 AC3 THR C 778 THR C 795 1 18 HELIX 22 AC4 GLN C 805 HIS C 807 5 3 HELIX 23 AC5 GLU C 808 HIS C 815 1 8 HELIX 24 AC6 LEU C 826 CYS C 836 1 11 HELIX 25 AC7 ASP C 840 ARG C 844 5 5 HELIX 26 AC8 THR C 846 SER C 860 1 15 SHEET 1 AA1 5 LEU A 587 GLY A 594 0 SHEET 2 AA1 5 VAL A 601 LYS A 607 -1 O VAL A 601 N LEU A 593 SHEET 3 AA1 5 SER A 613 THR A 620 -1 O VAL A 618 N MET A 602 SHEET 4 AA1 5 LYS A 666 PRO A 672 -1 O VAL A 669 N LYS A 619 SHEET 5 AA1 5 GLY A 654 GLU A 658 -1 N GLU A 658 O LYS A 666 SHEET 1 AA2 2 CYS A 729 LEU A 731 0 SHEET 2 AA2 2 VAL A 737 VAL A 739 -1 O CYS A 738 N MET A 730 SHEET 1 AA3 5 LEU C 587 ILE C 592 0 SHEET 2 AA3 5 VAL C 601 LYS C 607 -1 O GLU C 603 N GLY C 590 SHEET 3 AA3 5 SER C 613 LYS C 619 -1 O LEU C 614 N LEU C 606 SHEET 4 AA3 5 MET C 668 PRO C 672 -1 O VAL C 669 N LYS C 619 SHEET 5 AA3 5 GLY C 654 CYS C 656 -1 N GLY C 654 O ILE C 670 SHEET 1 AA4 2 CYS C 729 LEU C 731 0 SHEET 2 AA4 2 VAL C 737 VAL C 739 -1 O CYS C 738 N MET C 730 SITE 1 AC1 2 ARG A 584 LEU A 589 SITE 1 AC2 2 LEU A 819 LYS A 820 SITE 1 AC3 1 ARG A 818 SITE 1 AC4 2 GLN A 821 THR C 690 SITE 1 AC5 11 LEU A 593 ALA A 617 PRO A 672 PHE A 673 SITE 2 AC5 11 MET A 674 LYS A 675 ARG A 727 ASN A 728 SITE 3 AC5 11 MET A 730 ASP A 741 HOH A1004 SITE 1 AC6 3 PRO C 802 LEU C 819 LYS C 820 SITE 1 AC7 12 VAL C 601 ALA C 617 LYS C 619 PRO C 672 SITE 2 AC7 12 PHE C 673 MET C 674 LYS C 675 ARG C 727 SITE 3 AC7 12 ASN C 728 MET C 730 ASP C 741 HOH C1005 CRYST1 116.118 69.203 92.606 90.00 118.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008612 0.000000 0.004661 0.00000 SCALE2 0.000000 0.014450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012278 0.00000