HEADER IMMUNE SYSTEM 14-AUG-20 7CRV TITLE CRYSTAL STRUCTURE OF RNLRP1-FIIND COMPND MOL_ID: 1; COMPND 2 MOLECULE: NLR FAMILY PROTEIN 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: ZU5 DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NLR FAMILY PROTEIN 1; COMPND 8 CHAIN: D, B; COMPND 9 FRAGMENT: UPA DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: NLRP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: NLRP1; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.H.HUANG,X.X.ZHANG,J.WANG,J.J.CHAI REVDAT 4 29-NOV-23 7CRV 1 REMARK REVDAT 3 12-MAY-21 7CRV 1 JRNL REVDAT 2 31-MAR-21 7CRV 1 JRNL REMARK REVDAT 1 24-MAR-21 7CRV 0 JRNL AUTH M.HUANG,X.ZHANG,G.A.TOH,Q.GONG,J.WANG,Z.HAN,B.WU,F.ZHONG, JRNL AUTH 2 J.CHAI JRNL TITL STRUCTURAL AND BIOCHEMICAL MECHANISMS OF NLRP1 INHIBITION BY JRNL TITL 2 DPP9. JRNL REF NATURE V. 592 773 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 33731929 JRNL DOI 10.1038/S41586-021-03320-W REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7600 - 5.0400 1.00 2781 150 0.1773 0.2184 REMARK 3 2 5.0300 - 4.0000 1.00 2649 154 0.1617 0.1614 REMARK 3 3 4.0000 - 3.4900 1.00 2574 188 0.1945 0.2505 REMARK 3 4 3.4900 - 3.1800 1.00 2650 122 0.2235 0.2399 REMARK 3 5 3.1700 - 2.9500 1.00 2618 135 0.2509 0.3238 REMARK 3 6 2.9500 - 2.7700 1.00 2576 137 0.2681 0.3295 REMARK 3 7 2.7700 - 2.6400 1.00 2627 104 0.2788 0.3066 REMARK 3 8 2.6400 - 2.5200 1.00 2579 136 0.2768 0.3085 REMARK 3 9 2.5200 - 2.4200 1.00 2589 149 0.2682 0.3043 REMARK 3 10 2.4200 - 2.3400 1.00 2552 133 0.2716 0.2973 REMARK 3 11 2.3400 - 2.2700 1.00 2588 124 0.2717 0.3328 REMARK 3 12 2.2700 - 2.2000 1.00 2556 159 0.2796 0.3370 REMARK 3 13 2.2000 - 2.1400 1.00 2577 119 0.2661 0.3437 REMARK 3 14 2.1400 - 2.0900 1.00 2563 120 0.2782 0.3685 REMARK 3 15 2.0900 - 2.0400 1.00 2560 147 0.2892 0.3485 REMARK 3 16 2.0400 - 2.0000 0.99 2550 117 0.2934 0.3558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.265 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.648 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4671 REMARK 3 ANGLE : 1.386 6361 REMARK 3 CHIRALITY : 0.162 711 REMARK 3 PLANARITY : 0.010 816 REMARK 3 DIHEDRAL : 15.828 616 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43870 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.18.2-3874 REMARK 200 STARTING MODEL: 3G5B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PH 5.5, 1% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.18133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.36267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.36267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.18133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 ILE A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 TRP A 13 REMARK 465 MET A 14 REMARK 465 SER A 15 REMARK 465 HIS A 16 REMARK 465 MET A 17 REMARK 465 THR A 18 REMARK 465 MET A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 ASN A 23 REMARK 465 THR A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 SER A 29 REMARK 465 LEU A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 LYS A 34 REMARK 465 GLN A 35 REMARK 465 GLN A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 GLN A 39 REMARK 465 SER A 40 REMARK 465 GLY A 41 REMARK 465 ASP A 42 REMARK 465 LYS A 43 REMARK 465 HIS A 44 REMARK 465 MET A 45 REMARK 465 GLU A 46 REMARK 465 PRO A 47 REMARK 465 ARG D 334 REMARK 465 MET D 335 REMARK 465 ALA D 336 REMARK 465 SER D 337 REMARK 465 ALA D 338 REMARK 465 PRO D 339 REMARK 465 LYS D 340 REMARK 465 ASP D 341 REMARK 465 THR C 2 REMARK 465 LYS C 3 REMARK 465 ASN C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 6 REMARK 465 LEU C 7 REMARK 465 PHE C 8 REMARK 465 ILE C 9 REMARK 465 SER C 10 REMARK 465 SER C 11 REMARK 465 THR C 12 REMARK 465 TRP C 13 REMARK 465 MET C 14 REMARK 465 SER C 15 REMARK 465 HIS C 16 REMARK 465 MET C 17 REMARK 465 THR C 18 REMARK 465 MET C 19 REMARK 465 PRO C 20 REMARK 465 THR C 21 REMARK 465 GLU C 22 REMARK 465 ASN C 23 REMARK 465 THR C 24 REMARK 465 ASP C 25 REMARK 465 GLY C 26 REMARK 465 GLU C 27 REMARK 465 GLU C 28 REMARK 465 SER C 29 REMARK 465 LEU C 30 REMARK 465 THR C 31 REMARK 465 SER C 32 REMARK 465 SER C 33 REMARK 465 LYS C 34 REMARK 465 GLN C 35 REMARK 465 GLN C 36 REMARK 465 GLN C 37 REMARK 465 GLN C 38 REMARK 465 GLN C 39 REMARK 465 SER C 40 REMARK 465 GLY C 41 REMARK 465 ASP C 42 REMARK 465 LYS C 43 REMARK 465 HIS C 44 REMARK 465 PRO B 330 REMARK 465 ALA B 331 REMARK 465 LEU B 332 REMARK 465 PRO B 333 REMARK 465 ARG B 334 REMARK 465 MET B 335 REMARK 465 ALA B 336 REMARK 465 SER B 337 REMARK 465 ALA B 338 REMARK 465 PRO B 339 REMARK 465 LYS B 340 REMARK 465 ASP B 341 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 48 CG CD1 CD2 REMARK 470 ARG B 329 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 285 O SER B 290 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 46 CD GLU C 46 OE1 0.101 REMARK 500 GLU C 46 CD GLU C 46 OE2 0.088 REMARK 500 ARG C 68 CZ ARG C 68 NH1 0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 101 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG D 264 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLU C 46 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 GLU C 46 CG - CD - OE1 ANGL. DEV. = -14.4 DEGREES REMARK 500 GLU C 46 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 LEU C 48 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU C 48 CB - CG - CD2 ANGL. DEV. = 28.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 58 38.11 -94.54 REMARK 500 ASP A 164 -50.81 -14.86 REMARK 500 LEU D 218 -151.25 59.89 REMARK 500 SER D 269 -154.69 -159.57 REMARK 500 PRO D 330 170.48 -50.45 REMARK 500 SER C 58 31.53 -93.31 REMARK 500 PHE B 203 73.86 -102.71 REMARK 500 LEU B 218 -127.16 61.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU C 46 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7CRV A 2 187 UNP D9I2G3 D9I2G3_RAT 783 968 DBREF 7CRV D 188 341 UNP D9I2G3 D9I2G3_RAT 969 1122 DBREF 7CRV C 2 187 UNP D9I2G3 D9I2G3_RAT 783 968 DBREF 7CRV B 188 341 UNP D9I2G3 D9I2G3_RAT 969 1122 SEQRES 1 A 186 THR LYS ASN PRO LYS LEU PHE ILE SER SER THR TRP MET SEQRES 2 A 186 SER HIS MET THR MET PRO THR GLU ASN THR ASP GLY GLU SEQRES 3 A 186 GLU SER LEU THR SER SER LYS GLN GLN GLN GLN GLN SER SEQRES 4 A 186 GLY ASP LYS HIS MET GLU PRO LEU GLY THR ASP ASP ASP SEQRES 5 A 186 PHE TRP GLY PRO SER GLY PRO VAL SER THR GLU VAL VAL SEQRES 6 A 186 ASP ARG GLU ARG ASN LEU TYR ARG VAL ARG LEU PRO MET SEQRES 7 A 186 ALA GLY SER TYR HIS CYS PRO SER THR GLY LEU HIS PHE SEQRES 8 A 186 VAL VAL THR ARG ALA VAL THR ILE GLU ILE GLY PHE CYS SEQRES 9 A 186 ALA TRP SER GLN PHE LEU HIS GLU THR PRO LEU GLN HIS SEQRES 10 A 186 SER HIS MET VAL ALA GLY PRO LEU PHE ASP ILE LYS ALA SEQRES 11 A 186 GLU HIS GLY ALA VAL THR ALA VAL CYS LEU PRO HIS PHE SEQRES 12 A 186 VAL SER LEU GLN GLU GLY LYS VAL ASP SER SER LEU PHE SEQRES 13 A 186 HIS VAL ALA HIS PHE GLN ASP HIS GLY MET VAL LEU GLU SEQRES 14 A 186 THR PRO ALA ARG VAL GLU PRO HIS PHE ALA VAL LEU GLU SEQRES 15 A 186 ASN PRO SER PHE SEQRES 1 D 154 SER PRO MET GLY VAL LEU LEU ARG MET ILE PRO ALA VAL SEQRES 2 D 154 GLY HIS PHE ILE PRO ILE THR SER ILE THR LEU ILE TYR SEQRES 3 D 154 TYR ARG LEU TYR LEU GLU ASP ILE THR PHE HIS LEU TYR SEQRES 4 D 154 LEU VAL PRO ASN ASP CYS THR ILE ARG LYS ALA ILE ASP SEQRES 5 D 154 GLU GLU GLU LEU LYS PHE GLN PHE VAL ARG ILE ASN LYS SEQRES 6 D 154 PRO PRO PRO VAL ASP ALA LEU TYR VAL GLY SER ARG TYR SEQRES 7 D 154 ILE VAL SER SER SER LYS GLU VAL GLU ILE LEU PRO LYS SEQRES 8 D 154 GLU LEU GLU LEU CYS TYR ARG SER PRO ARG GLU SER GLN SEQRES 9 D 154 LEU PHE SER GLU ILE TYR VAL GLY ASN ILE GLY SER GLY SEQRES 10 D 154 ILE ASN LEU GLN LEU THR ASP LYS LYS TYR MET ASN LEU SEQRES 11 D 154 ILE TRP GLU ALA LEU LEU LYS PRO GLY ASP LEU ARG PRO SEQRES 12 D 154 ALA LEU PRO ARG MET ALA SER ALA PRO LYS ASP SEQRES 1 C 186 THR LYS ASN PRO LYS LEU PHE ILE SER SER THR TRP MET SEQRES 2 C 186 SER HIS MET THR MET PRO THR GLU ASN THR ASP GLY GLU SEQRES 3 C 186 GLU SER LEU THR SER SER LYS GLN GLN GLN GLN GLN SER SEQRES 4 C 186 GLY ASP LYS HIS MET GLU PRO LEU GLY THR ASP ASP ASP SEQRES 5 C 186 PHE TRP GLY PRO SER GLY PRO VAL SER THR GLU VAL VAL SEQRES 6 C 186 ASP ARG GLU ARG ASN LEU TYR ARG VAL ARG LEU PRO MET SEQRES 7 C 186 ALA GLY SER TYR HIS CYS PRO SER THR GLY LEU HIS PHE SEQRES 8 C 186 VAL VAL THR ARG ALA VAL THR ILE GLU ILE GLY PHE CYS SEQRES 9 C 186 ALA TRP SER GLN PHE LEU HIS GLU THR PRO LEU GLN HIS SEQRES 10 C 186 SER HIS MET VAL ALA GLY PRO LEU PHE ASP ILE LYS ALA SEQRES 11 C 186 GLU HIS GLY ALA VAL THR ALA VAL CYS LEU PRO HIS PHE SEQRES 12 C 186 VAL SER LEU GLN GLU GLY LYS VAL ASP SER SER LEU PHE SEQRES 13 C 186 HIS VAL ALA HIS PHE GLN ASP HIS GLY MET VAL LEU GLU SEQRES 14 C 186 THR PRO ALA ARG VAL GLU PRO HIS PHE ALA VAL LEU GLU SEQRES 15 C 186 ASN PRO SER PHE SEQRES 1 B 154 SER PRO MET GLY VAL LEU LEU ARG MET ILE PRO ALA VAL SEQRES 2 B 154 GLY HIS PHE ILE PRO ILE THR SER ILE THR LEU ILE TYR SEQRES 3 B 154 TYR ARG LEU TYR LEU GLU ASP ILE THR PHE HIS LEU TYR SEQRES 4 B 154 LEU VAL PRO ASN ASP CYS THR ILE ARG LYS ALA ILE ASP SEQRES 5 B 154 GLU GLU GLU LEU LYS PHE GLN PHE VAL ARG ILE ASN LYS SEQRES 6 B 154 PRO PRO PRO VAL ASP ALA LEU TYR VAL GLY SER ARG TYR SEQRES 7 B 154 ILE VAL SER SER SER LYS GLU VAL GLU ILE LEU PRO LYS SEQRES 8 B 154 GLU LEU GLU LEU CYS TYR ARG SER PRO ARG GLU SER GLN SEQRES 9 B 154 LEU PHE SER GLU ILE TYR VAL GLY ASN ILE GLY SER GLY SEQRES 10 B 154 ILE ASN LEU GLN LEU THR ASP LYS LYS TYR MET ASN LEU SEQRES 11 B 154 ILE TRP GLU ALA LEU LEU LYS PRO GLY ASP LEU ARG PRO SEQRES 12 B 154 ALA LEU PRO ARG MET ALA SER ALA PRO LYS ASP HELIX 1 AA1 GLY A 49 ASP A 53 5 5 HELIX 2 AA2 ALA A 106 PHE A 110 5 5 HELIX 3 AA3 LEU A 116 HIS A 118 5 3 HELIX 4 AA4 ASP A 153 SER A 155 5 3 HELIX 5 AA5 ASP D 231 LYS D 244 1 14 HELIX 6 AA6 LYS D 324 LEU D 328 5 5 HELIX 7 AA7 THR C 114 HIS C 118 5 5 HELIX 8 AA8 ASP C 153 SER C 155 5 3 HELIX 9 AA9 ASP B 231 PHE B 245 1 15 HELIX 10 AB1 LYS B 324 LEU B 328 5 5 SHEET 1 AA1 2 PHE A 54 GLY A 56 0 SHEET 2 AA1 2 GLY A 59 VAL A 61 -1 O VAL A 61 N PHE A 54 SHEET 1 AA2 6 GLU A 64 ASP A 67 0 SHEET 2 AA2 6 LEU A 72 LEU A 77 -1 O ARG A 74 N GLU A 64 SHEET 3 AA2 6 VAL A 98 CYS A 105 -1 O ILE A 102 N TYR A 73 SHEET 4 AA2 6 LEU A 126 LYS A 130 -1 O LYS A 130 N GLU A 101 SHEET 5 AA2 6 PRO B 189 ARG B 195 -1 O MET B 190 N PHE A 127 SHEET 6 AA2 6 HIS A 120 VAL A 122 -1 N MET A 121 O LEU B 194 SHEET 1 AA3 7 GLU A 64 ASP A 67 0 SHEET 2 AA3 7 LEU A 72 LEU A 77 -1 O ARG A 74 N GLU A 64 SHEET 3 AA3 7 VAL A 98 CYS A 105 -1 O ILE A 102 N TYR A 73 SHEET 4 AA3 7 LEU A 126 LYS A 130 -1 O LYS A 130 N GLU A 101 SHEET 5 AA3 7 PRO B 189 ARG B 195 -1 O MET B 190 N PHE A 127 SHEET 6 AA3 7 PHE A 157 GLN A 163 -1 N HIS A 158 O LEU B 193 SHEET 7 AA3 7 GLY A 166 GLU A 170 -1 O VAL A 168 N HIS A 161 SHEET 1 AA4 5 GLY A 81 HIS A 84 0 SHEET 2 AA4 5 HIS A 91 VAL A 94 -1 O PHE A 92 N TYR A 83 SHEET 3 AA4 5 VAL A 136 PRO A 142 -1 O CYS A 140 N HIS A 91 SHEET 4 AA4 5 PHE A 179 GLU A 183 -1 O ALA A 180 N LEU A 141 SHEET 5 AA4 5 ARG A 174 VAL A 175 -1 N ARG A 174 O VAL A 181 SHEET 1 AA5 6 GLU C 64 ASP C 67 0 SHEET 2 AA5 6 LEU C 72 LEU C 77 -1 O ARG C 74 N GLU C 64 SHEET 3 AA5 6 VAL C 98 CYS C 105 -1 O ILE C 100 N VAL C 75 SHEET 4 AA5 6 LEU C 126 ALA C 131 -1 O ASP C 128 N GLY C 103 SHEET 5 AA5 6 PRO D 189 ARG D 195 -1 N MET D 190 O PHE C 127 SHEET 6 AA5 6 HIS C 120 VAL C 122 -1 O MET C 121 N LEU D 194 SHEET 1 AA6 7 GLU C 64 ASP C 67 0 SHEET 2 AA6 7 LEU C 72 LEU C 77 -1 O ARG C 74 N GLU C 64 SHEET 3 AA6 7 VAL C 98 CYS C 105 -1 O ILE C 100 N VAL C 75 SHEET 4 AA6 7 LEU C 126 ALA C 131 -1 O ASP C 128 N GLY C 103 SHEET 5 AA6 7 PRO D 189 ARG D 195 -1 N MET D 190 O PHE C 127 SHEET 6 AA6 7 PHE C 157 GLN C 163 -1 O ALA C 160 N GLY D 191 SHEET 7 AA6 7 GLY C 166 GLU C 170 -1 O VAL C 168 N HIS C 161 SHEET 1 AA7 2 PRO D 205 ILE D 206 0 SHEET 2 AA7 2 LEU D 259 TYR D 260 -1 O LEU D 259 N ILE D 206 SHEET 1 AA8 5 VAL D 248 ILE D 250 0 SHEET 2 AA8 5 SER D 208 TYR D 217 -1 N ILE D 212 O ILE D 250 SHEET 3 AA8 5 ASP D 220 PRO D 229 -1 O ASP D 220 N TYR D 217 SHEET 4 AA8 5 SER D 294 VAL D 298 -1 O ILE D 296 N PHE D 223 SHEET 5 AA8 5 VAL D 273 LEU D 276 -1 N LEU D 276 O GLU D 295 SHEET 1 AA9 4 GLU D 279 GLU D 281 0 SHEET 2 AA9 4 ARG D 264 SER D 268 -1 N TYR D 265 O LEU D 280 SHEET 3 AA9 4 ILE D 305 ASP D 311 -1 O THR D 310 N ILE D 266 SHEET 4 AA9 4 LEU D 317 LEU D 323 -1 O LEU D 323 N ILE D 305 SHEET 1 AB1 2 PHE C 54 GLY C 56 0 SHEET 2 AB1 2 GLY C 59 VAL C 61 -1 O VAL C 61 N PHE C 54 SHEET 1 AB2 5 GLY C 81 HIS C 84 0 SHEET 2 AB2 5 HIS C 91 VAL C 94 -1 O PHE C 92 N TYR C 83 SHEET 3 AB2 5 VAL C 136 PRO C 142 -1 O THR C 137 N VAL C 93 SHEET 4 AB2 5 PHE C 179 GLU C 183 -1 O ALA C 180 N LEU C 141 SHEET 5 AB2 5 ARG C 174 VAL C 175 -1 N ARG C 174 O VAL C 181 SHEET 1 AB3 2 PRO B 205 ILE B 206 0 SHEET 2 AB3 2 LEU B 259 TYR B 260 -1 O LEU B 259 N ILE B 206 SHEET 1 AB4 5 VAL B 248 ILE B 250 0 SHEET 2 AB4 5 SER B 208 TYR B 217 -1 N ILE B 212 O ILE B 250 SHEET 3 AB4 5 ASP B 220 PRO B 229 -1 O VAL B 228 N ILE B 209 SHEET 4 AB4 5 PHE B 293 GLY B 299 -1 O ILE B 296 N PHE B 223 SHEET 5 AB4 5 GLU B 274 LEU B 276 -1 N LEU B 276 O GLU B 295 SHEET 1 AB5 4 GLU B 279 GLU B 281 0 SHEET 2 AB5 4 ARG B 264 SER B 269 -1 N TYR B 265 O LEU B 280 SHEET 3 AB5 4 ILE B 305 ASP B 311 -1 O GLN B 308 N SER B 268 SHEET 4 AB5 4 LEU B 317 LEU B 323 -1 O LEU B 323 N ILE B 305 CISPEP 1 LEU D 276 PRO D 277 0 -8.68 CISPEP 2 LEU B 276 PRO B 277 0 -8.00 CRYST1 83.955 83.955 156.544 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011911 0.006877 0.000000 0.00000 SCALE2 0.000000 0.013754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006388 0.00000 TER 1093 PHE A 187 TER 2276 PRO D 333 TER 3396 PHE C 187 TER 4546 ARG B 329 MASTER 437 0 0 10 62 0 0 6 4542 4 0 54 END