HEADER HYDROLASE 19-AUG-20 7CTL TITLE CRYSTAL STRUCTURE OF NADH BOUND HOLO FORM OF ALPHA-GLUCURONIDASE TITLE 2 (TM0752) FROM THERMOTOGA MARITIMA AT 1.97 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TM_0752; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMH2T7 KEYWDS GLYCOSYL HYDROLASE FAMILY 4, NAD(P)-BINDING ROSSMANN-FOLD DOMAIN, LDH KEYWDS 2 C-TERMINAL DOMAIN-LIKE, HYDROLASE ACTIVITY, ALPHA-GLUCURONIDASE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MANOJ,B.S.MOHAPATRA REVDAT 3 29-NOV-23 7CTL 1 REMARK REVDAT 2 14-SEP-22 7CTL 1 JRNL REVDAT 1 01-SEP-21 7CTL 0 JRNL AUTH S.B.MOHAPATRA,N.MANOJ JRNL TITL STRUCTURAL BASIS OF CATALYSIS AND SUBSTRATE RECOGNITION BY JRNL TITL 2 THE NAD(H)-DEPENDENT ALPHA-D-GLUCURONIDASE FROM THE JRNL TITL 3 GLYCOSIDE HYDROLASE FAMILY 4. JRNL REF BIOCHEM.J. V. 478 943 2021 JRNL REFN ESSN 1470-8728 JRNL PMID 33565573 JRNL DOI 10.1042/BCJ20200824 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6500 - 4.6268 1.00 2662 145 0.1501 0.1843 REMARK 3 2 4.6268 - 3.6746 1.00 2632 143 0.1273 0.1676 REMARK 3 3 3.6746 - 3.2107 1.00 2588 161 0.1545 0.2103 REMARK 3 4 3.2107 - 2.9174 1.00 2628 138 0.1853 0.2536 REMARK 3 5 2.9174 - 2.7085 1.00 2588 128 0.1920 0.2332 REMARK 3 6 2.7085 - 2.5489 1.00 2620 141 0.1781 0.2341 REMARK 3 7 2.5489 - 2.4213 1.00 2593 143 0.1822 0.2220 REMARK 3 8 2.4213 - 2.3159 1.00 2614 125 0.1921 0.2520 REMARK 3 9 2.3159 - 2.2268 1.00 2618 130 0.2293 0.2933 REMARK 3 10 2.2268 - 2.1500 1.00 2563 153 0.2251 0.2687 REMARK 3 11 2.1500 - 2.0828 1.00 2594 135 0.2313 0.2452 REMARK 3 12 2.0828 - 2.0233 1.00 2588 117 0.2449 0.3067 REMARK 3 13 2.0233 - 1.9700 1.00 2672 124 0.2827 0.3173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3935 REMARK 3 ANGLE : 0.804 5357 REMARK 3 CHIRALITY : 0.049 572 REMARK 3 PLANARITY : 0.005 686 REMARK 3 DIHEDRAL : 11.201 2332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4960 4.5343 89.1574 REMARK 3 T TENSOR REMARK 3 T11: 0.6227 T22: 0.4494 REMARK 3 T33: 0.2224 T12: 0.0273 REMARK 3 T13: -0.0093 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.2125 L22: 1.4319 REMARK 3 L33: 1.4396 L12: -0.0693 REMARK 3 L13: 0.3796 L23: -0.0940 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.5450 S13: 0.1078 REMARK 3 S21: -0.7232 S22: -0.0197 S23: 0.1588 REMARK 3 S31: -0.3075 S32: -0.0286 S33: 0.0128 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5369 -4.8263 114.0280 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.1630 REMARK 3 T33: 0.1735 T12: -0.0021 REMARK 3 T13: -0.0450 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.8754 L22: 1.7695 REMARK 3 L33: 1.1707 L12: -0.2134 REMARK 3 L13: 0.1279 L23: 0.0156 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.0887 S13: -0.1055 REMARK 3 S21: -0.3221 S22: -0.0146 S23: 0.1989 REMARK 3 S31: 0.0207 S32: -0.0895 S33: -0.0176 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5643 -9.3452 90.4665 REMARK 3 T TENSOR REMARK 3 T11: 0.7393 T22: 0.6191 REMARK 3 T33: 0.4496 T12: -0.0506 REMARK 3 T13: -0.1230 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 0.0925 L22: 0.3092 REMARK 3 L33: 1.0373 L12: -0.0195 REMARK 3 L13: -0.1685 L23: 0.2293 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.3799 S13: -0.1300 REMARK 3 S21: -0.4569 S22: 0.1320 S23: 0.2840 REMARK 3 S31: 0.3619 S32: -0.1541 S33: -0.0414 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 346 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2888 0.8884 117.2164 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.1725 REMARK 3 T33: 0.1974 T12: 0.0037 REMARK 3 T13: 0.0332 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.8790 L22: 1.1768 REMARK 3 L33: 1.6161 L12: -0.1253 REMARK 3 L13: 0.0918 L23: -0.1389 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: 0.0940 S13: 0.0500 REMARK 3 S21: -0.3029 S22: -0.0733 S23: -0.0619 REMARK 3 S31: -0.1612 S32: 0.0292 S33: -0.0326 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35756 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 29.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.27200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14 % PEG 3350, 0.2 M TRILITHIUM REMARK 280 CITRATE, 0.1 M IMIDAZOLE WITH PH 5.8, 2-PROPANOL, 7 MM NADH, 7 REMARK 280 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.36000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.36000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 12.52186 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 260.12532 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLU A 469 REMARK 465 LYS A 470 REMARK 465 LEU A 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 LYS A 104 CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 234 CD CE NZ REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 315 CE NZ REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 GLN A 322 CG CD OE1 NE2 REMARK 470 LYS A 327 NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 338 CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 GLN A 449 OE1 NE2 REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 468 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 210 O HOH A 604 1.54 REMARK 500 OD2 ASP A 373 HZ2 LYS A 405 1.60 REMARK 500 O HOH A 604 O HOH A 637 2.13 REMARK 500 O HOH A 840 O HOH A 882 2.16 REMARK 500 O HOH A 810 O HOH A 814 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 121 74.53 -154.35 REMARK 500 LEU A 130 -53.98 76.67 REMARK 500 ALA A 150 70.63 -156.68 REMARK 500 ASN A 271 59.89 -98.78 REMARK 500 TYR A 408 -64.45 -123.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI A 500 DBREF 7CTL A 1 471 UNP Q9WZL1 Q9WZL1_THEMA 1 471 SEQADV 7CTL MET A -11 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL GLY A -10 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL SER A -9 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL ASP A -8 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL LYS A -7 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL ILE A -6 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL HIS A -5 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL HIS A -4 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL HIS A -3 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL HIS A -2 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL HIS A -1 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTL HIS A 0 UNP Q9WZL1 EXPRESSION TAG SEQRES 1 A 483 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 483 LYS ILE SER ILE ILE GLY ALA GLY SER VAL ARG PHE ALA SEQRES 3 A 483 LEU GLN LEU VAL GLY ASP ILE ALA GLN THR GLU GLU LEU SEQRES 4 A 483 SER ARG GLU ASP THR HIS ILE TYR MET MET ASP VAL HIS SEQRES 5 A 483 GLU ARG ARG LEU ASN ALA SER TYR ILE LEU ALA ARG LYS SEQRES 6 A 483 TYR VAL GLU GLU LEU ASN SER PRO VAL LYS ILE VAL LYS SEQRES 7 A 483 THR SER SER LEU ASP GLU ALA ILE ASP GLY ALA ASP PHE SEQRES 8 A 483 ILE ILE ASN THR ALA TYR PRO TYR ASP PRO ARG TYR HIS SEQRES 9 A 483 ASP SER GLY SER GLN ARG TRP ASP GLU VAL THR LYS VAL SEQRES 10 A 483 GLY GLU LYS HIS GLY TYR TYR ARG GLY ILE ASP SER GLN SEQRES 11 A 483 GLU LEU ASN MET VAL SER THR TYR THR TYR VAL LEU SER SEQRES 12 A 483 SER TYR PRO ASP MET LYS LEU ALA LEU GLU ILE ALA GLU SEQRES 13 A 483 LYS MET LYS LYS MET ALA PRO LYS ALA TYR LEU MET GLN SEQRES 14 A 483 THR ALA ASN PRO VAL PHE GLU ILE THR GLN ALA VAL ARG SEQRES 15 A 483 ARG TRP THR GLY ALA ASN ILE VAL GLY PHE CYS HIS GLY SEQRES 16 A 483 VAL ALA GLY VAL TYR GLU VAL PHE GLU LYS LEU ASP LEU SEQRES 17 A 483 ASP PRO GLU GLU VAL ASP TRP GLN VAL ALA GLY VAL ASN SEQRES 18 A 483 HIS GLY ILE TRP LEU ASN ARG PHE ARG TYR ARG GLY GLU SEQRES 19 A 483 ASP ALA TYR PRO LEU LEU ASP GLU TRP ILE GLU LYS LYS SEQRES 20 A 483 LEU PRO GLU TRP GLU PRO LYS ASN PRO TRP ASP THR GLN SEQRES 21 A 483 MET SER PRO ALA ALA MET ASP MET TYR LYS PHE TYR GLY SEQRES 22 A 483 MET LEU PRO ILE GLY ASP THR VAL ARG ASN GLY SER TRP SEQRES 23 A 483 LYS TYR HIS TYR ASN LEU GLU THR LYS LYS LYS TRP PHE SEQRES 24 A 483 GLY LYS PHE GLY GLY ILE ASP ASN GLU VAL GLU ARG PRO SEQRES 25 A 483 LYS PHE HIS GLU GLN LEU ARG ARG ALA ARG GLU ARG LEU SEQRES 26 A 483 ILE LYS LEU ALA GLU GLU VAL GLN GLN ASN PRO GLY MET SEQRES 27 A 483 LYS LEU THR GLU GLU HIS PRO GLU ILE PHE PRO LYS GLY SEQRES 28 A 483 LYS LEU SER GLY GLU GLN HIS ILE PRO PHE ILE ASN ALA SEQRES 29 A 483 ILE ALA ASN ASN LYS ARG VAL ARG LEU PHE LEU ASN VAL SEQRES 30 A 483 GLU ASN GLN GLY THR LEU LYS ASP PHE PRO ASP ASP VAL SEQRES 31 A 483 VAL MET GLU LEU PRO VAL TRP VAL ASP CYS CYS GLY ILE SEQRES 32 A 483 HIS ARG GLU LYS VAL GLU PRO ASP LEU THR HIS ARG ILE SEQRES 33 A 483 LYS ILE PHE TYR LEU TRP PRO ARG ILE LEU ARG MET GLU SEQRES 34 A 483 TRP ASN LEU GLU ALA TYR ILE SER ARG ASP ARG LYS VAL SEQRES 35 A 483 LEU GLU GLU ILE LEU ILE ARG ASP PRO ARG THR LYS SER SEQRES 36 A 483 TYR GLU GLN ILE VAL GLN VAL LEU ASP GLU ILE PHE ASN SEQRES 37 A 483 LEU PRO PHE ASN GLU GLU LEU ARG ARG TYR TYR LYS GLU SEQRES 38 A 483 LYS LEU HET NAI A 500 71 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 HOH *303(H2 O) HELIX 1 AA1 SER A 10 GLN A 23 1 14 HELIX 2 AA2 HIS A 40 LEU A 58 1 19 HELIX 3 AA3 SER A 69 ASP A 75 1 7 HELIX 4 AA4 GLY A 95 HIS A 109 1 15 HELIX 5 AA5 SER A 132 ALA A 150 1 19 HELIX 6 AA6 PRO A 161 GLY A 174 1 14 HELIX 7 AA7 HIS A 182 ALA A 185 5 4 HELIX 8 AA8 GLY A 186 LEU A 194 1 9 HELIX 9 AA9 ASP A 197 GLU A 199 5 3 HELIX 10 AB1 ALA A 224 LYS A 235 1 12 HELIX 11 AB2 LEU A 236 TRP A 239 5 4 HELIX 12 AB3 SER A 250 GLY A 261 1 12 HELIX 13 AB4 GLY A 266 ARG A 270 5 5 HELIX 14 AB5 SER A 273 HIS A 277 5 5 HELIX 15 AB6 ASN A 279 GLY A 288 1 10 HELIX 16 AB7 VAL A 297 ASN A 323 1 27 HELIX 17 AB8 LYS A 327 HIS A 332 1 6 HELIX 18 AB9 GLN A 345 ASN A 356 1 12 HELIX 19 AC1 THR A 401 TYR A 408 1 8 HELIX 20 AC2 TYR A 408 SER A 425 1 18 HELIX 21 AC3 ASP A 427 ARG A 437 1 11 HELIX 22 AC4 SER A 443 LEU A 457 1 15 HELIX 23 AC5 ASN A 460 TYR A 467 1 8 SHEET 1 AA1 9 LYS A 63 THR A 67 0 SHEET 2 AA1 9 THR A 32 MET A 37 1 N MET A 36 O VAL A 65 SHEET 3 AA1 9 MET A 1 ILE A 6 1 N MET A 1 O HIS A 33 SHEET 4 AA1 9 PHE A 79 ASN A 82 1 O ILE A 81 N SER A 4 SHEET 5 AA1 9 TYR A 154 GLN A 157 1 O TYR A 154 N ILE A 80 SHEET 6 AA1 9 ILE A 177 PHE A 180 1 O VAL A 178 N LEU A 155 SHEET 7 AA1 9 VAL A 359 GLU A 366 -1 O ASN A 364 N GLY A 179 SHEET 8 AA1 9 VAL A 379 ASP A 387 -1 O VAL A 384 N LEU A 361 SHEET 9 AA1 9 GLY A 390 ARG A 393 -1 O HIS A 392 N TRP A 385 SHEET 1 AA2 3 VAL A 201 VAL A 208 0 SHEET 2 AA2 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA2 3 GLU A 222 ASP A 223 -1 O GLU A 222 N TYR A 219 SHEET 1 AA3 3 VAL A 201 VAL A 208 0 SHEET 2 AA3 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA3 3 PRO A 264 ILE A 265 -1 O ILE A 265 N ILE A 212 CISPEP 1 ASN A 160 PRO A 161 0 1.67 CISPEP 2 GLU A 397 PRO A 398 0 -11.12 SITE 1 AC1 23 GLY A 7 GLY A 9 SER A 10 PHE A 13 SITE 2 AC1 23 ASP A 38 VAL A 39 HIS A 40 ARG A 43 SITE 3 AC1 23 THR A 83 ALA A 84 TYR A 85 PRO A 86 SITE 4 AC1 23 TYR A 87 THR A 158 ALA A 159 ASN A 160 SITE 5 AC1 23 ARG A 310 GLU A 344 HOH A 631 HOH A 694 SITE 6 AC1 23 HOH A 758 HOH A 813 HOH A 818 CRYST1 72.720 81.280 89.000 90.00 103.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013751 0.000000 0.003182 0.00000 SCALE2 0.000000 0.012303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011533 0.00000