HEADER HYDROLASE 19-AUG-20 7CTM TITLE CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-GLUCURONIDASE (TM0752) TITLE 2 IN COMPLEX WITH NADH AND D-GLUCURONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TM_0752; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMH2T7 KEYWDS GLYCOSYL HYDROLASE FAMILY 4, NAD(P)-BINDING ROSSMANN-FOLD DOMAIN, LDH KEYWDS 2 C-TERMINAL DOMAIN-LIKE, HYDROLASE ACTIVITY, ALPHA-GLUCURONIDASE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MANOJ,B.S.MOHAPATRA REVDAT 3 29-NOV-23 7CTM 1 REMARK REVDAT 2 14-SEP-22 7CTM 1 JRNL REVDAT 1 01-SEP-21 7CTM 0 JRNL AUTH S.B.MOHAPATRA,N.MANOJ JRNL TITL STRUCTURAL BASIS OF CATALYSIS AND SUBSTRATE RECOGNITION BY JRNL TITL 2 THE NAD(H)-DEPENDENT ALPHA-D-GLUCURONIDASE FROM THE JRNL TITL 3 GLYCOSIDE HYDROLASE FAMILY 4. JRNL REF BIOCHEM.J. V. 478 943 2021 JRNL REFN ESSN 1470-8728 JRNL PMID 33565573 JRNL DOI 10.1042/BCJ20200824 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 40914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7900 - 4.4563 0.99 2991 164 0.1448 0.1824 REMARK 3 2 4.4563 - 3.5380 0.99 2915 173 0.1181 0.1511 REMARK 3 3 3.5380 - 3.0911 0.98 2894 158 0.1432 0.1885 REMARK 3 4 3.0911 - 2.8086 0.98 2900 156 0.1544 0.2068 REMARK 3 5 2.8086 - 2.6073 0.97 2844 140 0.1515 0.1950 REMARK 3 6 2.6073 - 2.4536 0.96 2839 153 0.1498 0.2167 REMARK 3 7 2.4536 - 2.3308 0.95 2815 125 0.1472 0.1994 REMARK 3 8 2.3308 - 2.2293 0.93 2743 149 0.1421 0.1921 REMARK 3 9 2.2293 - 2.1435 0.92 2685 158 0.1552 0.1866 REMARK 3 10 2.1435 - 2.0695 0.91 2675 128 0.1636 0.2140 REMARK 3 11 2.0695 - 2.0048 0.90 2665 125 0.1687 0.2351 REMARK 3 12 2.0048 - 1.9475 0.90 2654 126 0.1972 0.2405 REMARK 3 13 1.9475 - 1.8963 0.90 2640 129 0.2338 0.2752 REMARK 3 14 1.8963 - 1.8500 0.90 2649 121 0.2577 0.3233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9721 3.3985 88.5375 REMARK 3 T TENSOR REMARK 3 T11: 0.3011 T22: 0.2673 REMARK 3 T33: 0.1262 T12: 0.0353 REMARK 3 T13: -0.0205 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.9556 L22: 2.0156 REMARK 3 L33: 1.3434 L12: -0.5609 REMARK 3 L13: 0.3853 L23: 0.3156 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: 0.3355 S13: -0.0260 REMARK 3 S21: -0.4477 S22: -0.1192 S23: 0.1922 REMARK 3 S31: -0.1251 S32: -0.1904 S33: 0.0196 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4120 -4.5801 103.2355 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.1459 REMARK 3 T33: 0.1229 T12: 0.0073 REMARK 3 T13: 0.0195 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.5592 L22: 1.7855 REMARK 3 L33: 2.2033 L12: -0.2649 REMARK 3 L13: 0.0914 L23: -1.1888 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: 0.1453 S13: -0.0416 REMARK 3 S21: -0.2700 S22: -0.0603 S23: -0.0456 REMARK 3 S31: 0.0541 S32: 0.1445 S33: 0.0096 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1546 5.6354 108.9191 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.0555 REMARK 3 T33: 0.1131 T12: -0.0028 REMARK 3 T13: -0.0071 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.9423 L22: 0.4554 REMARK 3 L33: 2.0450 L12: -0.9458 REMARK 3 L13: -0.8776 L23: -0.1014 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: 0.2053 S13: -0.0334 REMARK 3 S21: -0.2311 S22: 0.0285 S23: 0.0468 REMARK 3 S31: -0.0906 S32: -0.0282 S33: -0.0145 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3518 -5.4100 119.1053 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.1410 REMARK 3 T33: 0.1728 T12: -0.0042 REMARK 3 T13: -0.0077 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.9940 L22: 1.2239 REMARK 3 L33: 0.9210 L12: -0.1674 REMARK 3 L13: 0.2295 L23: 0.0371 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0016 S13: -0.1303 REMARK 3 S21: -0.0805 S22: 0.0188 S23: 0.3361 REMARK 3 S31: 0.0336 S32: -0.2321 S33: -0.0135 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7661 -1.5604 94.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.3216 T22: 0.2722 REMARK 3 T33: 0.2118 T12: 0.0213 REMARK 3 T13: -0.0751 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 0.2389 L22: 0.1215 REMARK 3 L33: 1.1240 L12: -0.0285 REMARK 3 L13: -0.4882 L23: -0.0630 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: 0.2519 S13: -0.0979 REMARK 3 S21: -0.3561 S22: -0.0684 S23: 0.1216 REMARK 3 S31: 0.0433 S32: -0.3517 S33: 0.0650 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9281 11.6096 120.1552 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.0860 REMARK 3 T33: 0.1406 T12: 0.0354 REMARK 3 T13: 0.0057 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.2418 L22: 1.0746 REMARK 3 L33: 2.7340 L12: -0.0565 REMARK 3 L13: 0.2304 L23: -0.9617 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.0187 S13: 0.1667 REMARK 3 S21: -0.0382 S22: -0.0558 S23: 0.0919 REMARK 3 S31: -0.3622 S32: -0.0938 S33: 0.0040 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2623 -9.6476 118.6063 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.1202 REMARK 3 T33: 0.1183 T12: 0.0229 REMARK 3 T13: 0.0155 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.6152 L22: 1.9456 REMARK 3 L33: 1.7174 L12: -0.1895 REMARK 3 L13: -0.0352 L23: 0.5766 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0943 S13: -0.0739 REMARK 3 S21: -0.1340 S22: -0.0340 S23: -0.1776 REMARK 3 S31: 0.1465 S32: 0.1739 S33: 0.0135 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.30 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40918 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 36.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.86800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14 % PEG 3350, 0.2 M TRILITHIUM REMARK 280 CITRATE, 0.1 M IMIDAZOLE WITH PH 5.8, 2-PROPANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.07500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.07500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 14.92574 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 259.21030 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLU A 469 REMARK 465 LYS A 470 REMARK 465 LEU A 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 ARG A 29 CZ NH1 NH2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 63 CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU A 192 CD OE1 OE2 REMARK 470 GLU A 240 CD OE1 OE2 REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 LYS A 289 CE NZ REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 LYS A 442 NZ REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 468 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 13 -36.91 -135.06 REMARK 500 ASN A 121 61.19 -154.86 REMARK 500 LEU A 130 -56.40 75.13 REMARK 500 ALA A 150 73.96 -150.35 REMARK 500 HIS A 332 59.37 -146.27 REMARK 500 TYR A 408 -63.30 -124.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1029 DISTANCE = 6.65 ANGSTROMS DBREF 7CTM A 1 471 UNP Q9WZL1 Q9WZL1_THEMA 1 471 SEQADV 7CTM MET A -11 UNP Q9WZL1 INITIATING METHIONINE SEQADV 7CTM GLY A -10 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM SER A -9 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM ASP A -8 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM LYS A -7 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM ILE A -6 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM HIS A -5 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM HIS A -4 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM HIS A -3 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM HIS A -2 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM HIS A -1 UNP Q9WZL1 EXPRESSION TAG SEQADV 7CTM HIS A 0 UNP Q9WZL1 EXPRESSION TAG SEQRES 1 A 483 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 483 LYS ILE SER ILE ILE GLY ALA GLY SER VAL ARG PHE ALA SEQRES 3 A 483 LEU GLN LEU VAL GLY ASP ILE ALA GLN THR GLU GLU LEU SEQRES 4 A 483 SER ARG GLU ASP THR HIS ILE TYR MET MET ASP VAL HIS SEQRES 5 A 483 GLU ARG ARG LEU ASN ALA SER TYR ILE LEU ALA ARG LYS SEQRES 6 A 483 TYR VAL GLU GLU LEU ASN SER PRO VAL LYS ILE VAL LYS SEQRES 7 A 483 THR SER SER LEU ASP GLU ALA ILE ASP GLY ALA ASP PHE SEQRES 8 A 483 ILE ILE ASN THR ALA TYR PRO TYR ASP PRO ARG TYR HIS SEQRES 9 A 483 ASP SER GLY SER GLN ARG TRP ASP GLU VAL THR LYS VAL SEQRES 10 A 483 GLY GLU LYS HIS GLY TYR TYR ARG GLY ILE ASP SER GLN SEQRES 11 A 483 GLU LEU ASN MET VAL SER THR TYR THR TYR VAL LEU SER SEQRES 12 A 483 SER TYR PRO ASP MET LYS LEU ALA LEU GLU ILE ALA GLU SEQRES 13 A 483 LYS MET LYS LYS MET ALA PRO LYS ALA TYR LEU MET GLN SEQRES 14 A 483 THR ALA ASN PRO VAL PHE GLU ILE THR GLN ALA VAL ARG SEQRES 15 A 483 ARG TRP THR GLY ALA ASN ILE VAL GLY PHE CSD HIS GLY SEQRES 16 A 483 VAL ALA GLY VAL TYR GLU VAL PHE GLU LYS LEU ASP LEU SEQRES 17 A 483 ASP PRO GLU GLU VAL ASP TRP GLN VAL ALA GLY VAL ASN SEQRES 18 A 483 HIS GLY ILE TRP LEU ASN ARG PHE ARG TYR ARG GLY GLU SEQRES 19 A 483 ASP ALA TYR PRO LEU LEU ASP GLU TRP ILE GLU LYS LYS SEQRES 20 A 483 LEU PRO GLU TRP GLU PRO LYS ASN PRO TRP ASP THR GLN SEQRES 21 A 483 MET SER PRO ALA ALA MET ASP MET TYR LYS PHE TYR GLY SEQRES 22 A 483 MET LEU PRO ILE GLY ASP THR VAL ARG ASN GLY SER TRP SEQRES 23 A 483 LYS TYR HIS TYR ASN LEU GLU THR LYS LYS LYS TRP PHE SEQRES 24 A 483 GLY LYS PHE GLY GLY ILE ASP ASN GLU VAL GLU ARG PRO SEQRES 25 A 483 LYS PHE HIS GLU GLN LEU ARG ARG ALA ARG GLU ARG LEU SEQRES 26 A 483 ILE LYS LEU ALA GLU GLU VAL GLN GLN ASN PRO GLY MET SEQRES 27 A 483 LYS LEU THR GLU GLU HIS PRO GLU ILE PHE PRO LYS GLY SEQRES 28 A 483 LYS LEU SER GLY GLU GLN HIS ILE PRO PHE ILE ASN ALA SEQRES 29 A 483 ILE ALA ASN ASN LYS ARG VAL ARG LEU PHE LEU ASN VAL SEQRES 30 A 483 GLU ASN GLN GLY THR LEU LYS ASP PHE PRO ASP ASP VAL SEQRES 31 A 483 VAL MET GLU LEU PRO VAL TRP VAL ASP CYS CYS GLY ILE SEQRES 32 A 483 HIS ARG GLU LYS VAL GLU PRO ASP LEU THR HIS ARG ILE SEQRES 33 A 483 LYS ILE PHE TYR LEU TRP PRO ARG ILE LEU ARG MET GLU SEQRES 34 A 483 TRP ASN LEU GLU ALA TYR ILE SER ARG ASP ARG LYS VAL SEQRES 35 A 483 LEU GLU GLU ILE LEU ILE ARG ASP PRO ARG THR LYS SER SEQRES 36 A 483 TYR GLU GLN ILE VAL GLN VAL LEU ASP GLU ILE PHE ASN SEQRES 37 A 483 LEU PRO PHE ASN GLU GLU LEU ARG ARG TYR TYR LYS GLU SEQRES 38 A 483 LYS LEU MODRES 7CTM CSD A 181 CYS MODIFIED RESIDUE HET CSD A 181 12 HET NAI A 500 71 HET BDP A 501 22 HET IPA A 502 12 HETNAM CSD 3-SULFINOALANINE HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM IPA ISOPROPYL ALCOHOL HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN NAI NADH HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID HETSYN IPA 2-PROPANOL FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 BDP C6 H10 O7 FORMUL 4 IPA C3 H8 O FORMUL 5 HOH *429(H2 O) HELIX 1 AA1 PHE A 13 GLN A 23 1 11 HELIX 2 AA2 HIS A 40 LEU A 58 1 19 HELIX 3 AA3 SER A 69 ASP A 75 1 7 HELIX 4 AA4 GLY A 95 HIS A 109 1 15 HELIX 5 AA5 SER A 132 ALA A 150 1 19 HELIX 6 AA6 PRO A 161 GLY A 174 1 14 HELIX 7 AA7 HIS A 182 ALA A 185 5 4 HELIX 8 AA8 GLY A 186 LEU A 194 1 9 HELIX 9 AA9 ASP A 197 GLU A 199 5 3 HELIX 10 AB1 ALA A 224 LYS A 235 1 12 HELIX 11 AB2 LEU A 236 TRP A 239 5 4 HELIX 12 AB3 SER A 250 GLY A 261 1 12 HELIX 13 AB4 GLY A 266 ARG A 270 5 5 HELIX 14 AB5 SER A 273 HIS A 277 5 5 HELIX 15 AB6 ASN A 279 GLY A 288 1 10 HELIX 16 AB7 VAL A 297 ASN A 323 1 27 HELIX 17 AB8 LYS A 327 HIS A 332 1 6 HELIX 18 AB9 GLN A 345 ASN A 356 1 12 HELIX 19 AC1 THR A 401 TYR A 408 1 8 HELIX 20 AC2 TYR A 408 ARG A 426 1 19 HELIX 21 AC3 ASP A 427 ARG A 437 1 11 HELIX 22 AC4 SER A 443 ASN A 456 1 14 HELIX 23 AC5 LEU A 457 PHE A 459 5 3 HELIX 24 AC6 ASN A 460 LYS A 468 1 9 SHEET 1 AA1 9 LYS A 63 THR A 67 0 SHEET 2 AA1 9 THR A 32 MET A 37 1 N MET A 36 O VAL A 65 SHEET 3 AA1 9 MET A 1 ILE A 6 1 N MET A 1 O HIS A 33 SHEET 4 AA1 9 PHE A 79 ASN A 82 1 O ILE A 81 N SER A 4 SHEET 5 AA1 9 TYR A 154 GLN A 157 1 O MET A 156 N ILE A 80 SHEET 6 AA1 9 ILE A 177 PHE A 180 1 O PHE A 180 N GLN A 157 SHEET 7 AA1 9 VAL A 359 GLU A 366 -1 O ASN A 364 N GLY A 179 SHEET 8 AA1 9 VAL A 379 ASP A 387 -1 O VAL A 384 N LEU A 361 SHEET 9 AA1 9 GLY A 390 ARG A 393 -1 O HIS A 392 N TRP A 385 SHEET 1 AA2 3 VAL A 201 VAL A 208 0 SHEET 2 AA2 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA2 3 GLU A 222 ASP A 223 -1 O GLU A 222 N TYR A 219 SHEET 1 AA3 3 VAL A 201 VAL A 208 0 SHEET 2 AA3 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA3 3 PRO A 264 ILE A 265 -1 O ILE A 265 N ILE A 212 SSBOND 1 CYS A 388 CYS A 389 1555 1555 2.05 LINK C PHE A 180 N CSD A 181 1555 1555 1.33 LINK C CSD A 181 N HIS A 182 1555 1555 1.33 CISPEP 1 ASN A 160 PRO A 161 0 -1.03 CISPEP 2 GLU A 397 PRO A 398 0 -4.97 CRYST1 74.150 80.590 88.630 90.00 102.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013486 0.000000 0.003081 0.00000 SCALE2 0.000000 0.012408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011574 0.00000