HEADER OXIDOREDUCTASE 26-AUG-20 7CVP TITLE THE CRYSTAL STRUCTURE OF HUMAN PHGDH FROM BIORTUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-PGDH,2-OXOGLUTARATE REDUCTASE,MALATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.95,1.1.1.399,1.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHGDH, PGDH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CATALYTIC ACTIVITY, ELECTRON TRANSFER ACTIVITY, OXIDOREDUCTASE KEYWDS 2 ACTIVITY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,Z.LV,W.CHENG,D.LIN,Q.MIAO,Y.HUANG REVDAT 2 29-NOV-23 7CVP 1 REMARK REVDAT 1 09-SEP-20 7CVP 0 JRNL AUTH F.WANG,Z.LV,W.CHENG,D.LIN,Q.MIAO,Y.HUANG JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN PHGDH FROM BIORTUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 19516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.837 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3567 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.55000 REMARK 3 B22 (A**2) : 10.67600 REMARK 3 B33 (A**2) : -5.21500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.67500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.658 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.833 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3707 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3385 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5037 ; 1.326 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7841 ; 1.114 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 6.941 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;33.217 ;22.390 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 577 ;16.568 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.000 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.045 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4185 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 705 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 763 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 21 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1725 ; 0.143 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1975 ; 1.403 ; 3.810 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1974 ; 1.403 ; 3.808 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2453 ; 2.353 ; 5.683 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2454 ; 2.353 ; 5.685 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1732 ; 1.066 ; 3.777 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1733 ; 1.066 ; 3.777 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2584 ; 1.778 ; 5.666 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2585 ; 1.777 ; 5.667 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7CVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19518 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.486 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6CWA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH6.5, 25% PEG3,350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.81900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLU A -3 REMARK 465 ASN A -2 REMARK 465 LEU A -1 REMARK 465 TYR A 0 REMARK 465 PHE A 1 REMARK 465 GLN A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 GLY A 27 REMARK 465 LEU A 28 REMARK 465 GLN A 29 REMARK 465 VAL A 30 REMARK 465 VAL A 31 REMARK 465 GLU A 32 REMARK 465 LYS A 33 REMARK 465 GLN A 34 REMARK 465 ASN A 35 REMARK 465 LEU A 36 REMARK 465 SER A 37 REMARK 465 LYS A 38 REMARK 465 GLU A 39 REMARK 465 GLU A 40 REMARK 465 LEU A 41 REMARK 465 ILE A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 56 REMARK 465 THR A 57 REMARK 465 LYS A 58 REMARK 465 ASN A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 67 REMARK 465 GLU A 68 REMARK 465 LYS A 69 REMARK 465 LEU A 70 REMARK 465 GLN A 71 REMARK 465 GLY A 79 REMARK 465 VAL A 80 REMARK 465 ASP A 81 REMARK 465 ASN A 82 REMARK 465 VAL A 83 REMARK 465 ASP A 84 REMARK 465 LEU A 85 REMARK 465 GLU A 86 REMARK 465 ALA A 87 REMARK 465 ALA A 88 REMARK 465 THR A 89 REMARK 465 ARG A 90 REMARK 465 LYS A 91 REMARK 465 GLY A 92 REMARK 465 ILE A 93 REMARK 465 MET A 306 REMARK 465 VAL A 307 REMARK 465 LYS A 308 REMARK 465 GLY A 309 REMARK 465 LYS A 310 REMARK 465 SER A 311 REMARK 465 LEU A 312 REMARK 465 THR A 313 REMARK 465 GLY A 314 REMARK 465 VAL A 315 REMARK 465 MET B -13 REMARK 465 GLY B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 GLU B -3 REMARK 465 ASN B -2 REMARK 465 LEU B -1 REMARK 465 TYR B 0 REMARK 465 PHE B 1 REMARK 465 GLN B 2 REMARK 465 GLY B 3 REMARK 465 ALA B 4 REMARK 465 ASN B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 23 REMARK 465 GLN B 24 REMARK 465 ASP B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 LEU B 28 REMARK 465 GLN B 29 REMARK 465 VAL B 30 REMARK 465 VAL B 31 REMARK 465 GLU B 32 REMARK 465 LYS B 33 REMARK 465 GLN B 34 REMARK 465 ASN B 35 REMARK 465 LEU B 36 REMARK 465 SER B 37 REMARK 465 LYS B 38 REMARK 465 GLU B 39 REMARK 465 GLU B 40 REMARK 465 LEU B 41 REMARK 465 ILE B 42 REMARK 465 ALA B 43 REMARK 465 GLU B 44 REMARK 465 LEU B 45 REMARK 465 GLN B 46 REMARK 465 ASP B 47 REMARK 465 CYS B 48 REMARK 465 GLU B 49 REMARK 465 GLY B 50 REMARK 465 LEU B 51 REMARK 465 ILE B 52 REMARK 465 VAL B 53 REMARK 465 ARG B 54 REMARK 465 SER B 55 REMARK 465 ALA B 56 REMARK 465 THR B 57 REMARK 465 LYS B 58 REMARK 465 VAL B 59 REMARK 465 THR B 60 REMARK 465 ALA B 61 REMARK 465 VAL B 80 REMARK 465 ASP B 81 REMARK 465 ASN B 82 REMARK 465 VAL B 83 REMARK 465 ASP B 84 REMARK 465 LEU B 85 REMARK 465 GLU B 86 REMARK 465 ALA B 87 REMARK 465 ALA B 88 REMARK 465 THR B 89 REMARK 465 ARG B 90 REMARK 465 LYS B 91 REMARK 465 GLY B 92 REMARK 465 ILE B 93 REMARK 465 LEU B 94 REMARK 465 PHE B 303 REMARK 465 VAL B 304 REMARK 465 ASP B 305 REMARK 465 MET B 306 REMARK 465 VAL B 307 REMARK 465 LYS B 308 REMARK 465 GLY B 309 REMARK 465 LYS B 310 REMARK 465 SER B 311 REMARK 465 LEU B 312 REMARK 465 THR B 313 REMARK 465 GLY B 314 REMARK 465 VAL B 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 9 CG1 CG2 REMARK 470 ILE A 11 CG1 CG2 CD1 REMARK 470 SER A 12 OG REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ILE A 22 CG1 CG2 CD1 REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 ASP A 25 CG OD1 OD2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LEU A 45 CG CD1 CD2 REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 THR A 60 OG1 CG2 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 VAL A 63 CG1 CG2 REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 LEU A 94 CG CD1 CD2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 10 CG CD1 CD2 REMARK 470 SER B 12 OG REMARK 470 SER B 14 OG REMARK 470 LEU B 15 CG CD1 CD2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 ILE B 64 CG1 CG2 CD1 REMARK 470 ASN B 65 CG OD1 ND2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 VAL B 95 CG1 CG2 REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 GLU B 194 CG CD OE1 OE2 REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 289 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 11 79.56 -104.49 REMARK 500 ARG A 54 -70.67 -127.26 REMARK 500 GLU A 134 79.66 -103.86 REMARK 500 ARG A 135 -70.36 -66.01 REMARK 500 THR A 214 103.28 -49.38 REMARK 500 ASN A 218 -162.88 -121.69 REMARK 500 ALA A 235 -86.69 -118.91 REMARK 500 THR B 78 -69.61 -90.94 REMARK 500 ASN B 102 27.37 -140.41 REMARK 500 PHE B 138 55.61 -104.43 REMARK 500 ALA B 235 -87.50 -105.41 REMARK 500 SER B 287 59.20 -98.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 7CVP A 4 315 UNP O43175 SERA_HUMAN 4 315 DBREF 7CVP B 4 315 UNP O43175 SERA_HUMAN 4 315 SEQADV 7CVP MET A -13 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLY A -12 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLY A -11 UNP O43175 EXPRESSION TAG SEQADV 7CVP SER A -10 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS A -9 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS A -8 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS A -7 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS A -6 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS A -5 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS A -4 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLU A -3 UNP O43175 EXPRESSION TAG SEQADV 7CVP ASN A -2 UNP O43175 EXPRESSION TAG SEQADV 7CVP LEU A -1 UNP O43175 EXPRESSION TAG SEQADV 7CVP TYR A 0 UNP O43175 EXPRESSION TAG SEQADV 7CVP PHE A 1 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLN A 2 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLY A 3 UNP O43175 EXPRESSION TAG SEQADV 7CVP MET B -13 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLY B -12 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLY B -11 UNP O43175 EXPRESSION TAG SEQADV 7CVP SER B -10 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS B -9 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS B -8 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS B -7 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS B -6 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS B -5 UNP O43175 EXPRESSION TAG SEQADV 7CVP HIS B -4 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLU B -3 UNP O43175 EXPRESSION TAG SEQADV 7CVP ASN B -2 UNP O43175 EXPRESSION TAG SEQADV 7CVP LEU B -1 UNP O43175 EXPRESSION TAG SEQADV 7CVP TYR B 0 UNP O43175 EXPRESSION TAG SEQADV 7CVP PHE B 1 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLN B 2 UNP O43175 EXPRESSION TAG SEQADV 7CVP GLY B 3 UNP O43175 EXPRESSION TAG SEQRES 1 A 329 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 329 TYR PHE GLN GLY ALA ASN LEU ARG LYS VAL LEU ILE SER SEQRES 3 A 329 ASP SER LEU ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP SEQRES 4 A 329 GLY GLY LEU GLN VAL VAL GLU LYS GLN ASN LEU SER LYS SEQRES 5 A 329 GLU GLU LEU ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU SEQRES 6 A 329 ILE VAL ARG SER ALA THR LYS VAL THR ALA ASP VAL ILE SEQRES 7 A 329 ASN ALA ALA GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY SEQRES 8 A 329 THR GLY VAL ASP ASN VAL ASP LEU GLU ALA ALA THR ARG SEQRES 9 A 329 LYS GLY ILE LEU VAL MET ASN THR PRO ASN GLY ASN SER SEQRES 10 A 329 LEU SER ALA ALA GLU LEU THR CYS GLY MET ILE MET CYS SEQRES 11 A 329 LEU ALA ARG GLN ILE PRO GLN ALA THR ALA SER MET LYS SEQRES 12 A 329 ASP GLY LYS TRP GLU ARG LYS LYS PHE MET GLY THR GLU SEQRES 13 A 329 LEU ASN GLY LYS THR LEU GLY ILE LEU GLY LEU GLY ARG SEQRES 14 A 329 ILE GLY ARG GLU VAL ALA THR ARG MET GLN SER PHE GLY SEQRES 15 A 329 MET LYS THR ILE GLY TYR ASP PRO ILE ILE SER PRO GLU SEQRES 16 A 329 VAL SER ALA SER PHE GLY VAL GLN GLN LEU PRO LEU GLU SEQRES 17 A 329 GLU ILE TRP PRO LEU CYS ASP PHE ILE THR VAL HIS THR SEQRES 18 A 329 PRO LEU LEU PRO SER THR THR GLY LEU LEU ASN ASP ASN SEQRES 19 A 329 THR PHE ALA GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN SEQRES 20 A 329 CYS ALA ARG GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU SEQRES 21 A 329 ARG ALA LEU GLN SER GLY GLN CYS ALA GLY ALA ALA LEU SEQRES 22 A 329 ASP VAL PHE THR GLU GLU PRO PRO ARG ASP ARG ALA LEU SEQRES 23 A 329 VAL ASP HIS GLU ASN VAL ILE SER CYS PRO HIS LEU GLY SEQRES 24 A 329 ALA SER THR LYS GLU ALA GLN SER ARG CYS GLY GLU GLU SEQRES 25 A 329 ILE ALA VAL GLN PHE VAL ASP MET VAL LYS GLY LYS SER SEQRES 26 A 329 LEU THR GLY VAL SEQRES 1 B 329 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 B 329 TYR PHE GLN GLY ALA ASN LEU ARG LYS VAL LEU ILE SER SEQRES 3 B 329 ASP SER LEU ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP SEQRES 4 B 329 GLY GLY LEU GLN VAL VAL GLU LYS GLN ASN LEU SER LYS SEQRES 5 B 329 GLU GLU LEU ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU SEQRES 6 B 329 ILE VAL ARG SER ALA THR LYS VAL THR ALA ASP VAL ILE SEQRES 7 B 329 ASN ALA ALA GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY SEQRES 8 B 329 THR GLY VAL ASP ASN VAL ASP LEU GLU ALA ALA THR ARG SEQRES 9 B 329 LYS GLY ILE LEU VAL MET ASN THR PRO ASN GLY ASN SER SEQRES 10 B 329 LEU SER ALA ALA GLU LEU THR CYS GLY MET ILE MET CYS SEQRES 11 B 329 LEU ALA ARG GLN ILE PRO GLN ALA THR ALA SER MET LYS SEQRES 12 B 329 ASP GLY LYS TRP GLU ARG LYS LYS PHE MET GLY THR GLU SEQRES 13 B 329 LEU ASN GLY LYS THR LEU GLY ILE LEU GLY LEU GLY ARG SEQRES 14 B 329 ILE GLY ARG GLU VAL ALA THR ARG MET GLN SER PHE GLY SEQRES 15 B 329 MET LYS THR ILE GLY TYR ASP PRO ILE ILE SER PRO GLU SEQRES 16 B 329 VAL SER ALA SER PHE GLY VAL GLN GLN LEU PRO LEU GLU SEQRES 17 B 329 GLU ILE TRP PRO LEU CYS ASP PHE ILE THR VAL HIS THR SEQRES 18 B 329 PRO LEU LEU PRO SER THR THR GLY LEU LEU ASN ASP ASN SEQRES 19 B 329 THR PHE ALA GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN SEQRES 20 B 329 CYS ALA ARG GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU SEQRES 21 B 329 ARG ALA LEU GLN SER GLY GLN CYS ALA GLY ALA ALA LEU SEQRES 22 B 329 ASP VAL PHE THR GLU GLU PRO PRO ARG ASP ARG ALA LEU SEQRES 23 B 329 VAL ASP HIS GLU ASN VAL ILE SER CYS PRO HIS LEU GLY SEQRES 24 B 329 ALA SER THR LYS GLU ALA GLN SER ARG CYS GLY GLU GLU SEQRES 25 B 329 ILE ALA VAL GLN PHE VAL ASP MET VAL LYS GLY LYS SER SEQRES 26 B 329 LEU THR GLY VAL HET NAD A 401 44 HET NAD B 401 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *16(H2 O) HELIX 1 AA1 CYS A 18 GLY A 26 1 9 HELIX 2 AA2 ASN A 102 GLN A 120 1 19 HELIX 3 AA3 GLN A 120 ASP A 130 1 11 HELIX 4 AA4 ARG A 135 MET A 139 5 5 HELIX 5 AA5 GLY A 154 SER A 166 1 13 HELIX 6 AA6 SER A 179 ALA A 184 1 6 HELIX 7 AA7 SER A 185 GLY A 187 5 3 HELIX 8 AA8 PRO A 192 TRP A 197 1 6 HELIX 9 AA9 PRO A 198 CYS A 200 5 3 HELIX 10 AB1 ASN A 218 ALA A 223 1 6 HELIX 11 AB2 ASP A 241 SER A 251 1 11 HELIX 12 AB3 ARG A 270 HIS A 275 1 6 HELIX 13 AB4 THR A 288 ASP A 305 1 18 HELIX 14 AB5 PRO B 17 ILE B 22 1 6 HELIX 15 AB6 VAL B 63 ALA B 67 1 5 HELIX 16 AB7 ASN B 102 GLN B 120 1 19 HELIX 17 AB8 GLN B 120 ASP B 130 1 11 HELIX 18 AB9 ARG B 135 MET B 139 5 5 HELIX 19 AC1 GLY B 154 SER B 166 1 13 HELIX 20 AC2 SER B 179 PHE B 186 1 8 HELIX 21 AC3 PRO B 192 TRP B 197 1 6 HELIX 22 AC4 PRO B 198 CYS B 200 5 3 HELIX 23 AC5 ASN B 218 GLN B 224 1 7 HELIX 24 AC6 ASP B 241 SER B 251 1 11 HELIX 25 AC7 ARG B 270 HIS B 275 1 6 HELIX 26 AC8 THR B 288 GLN B 302 1 15 SHEET 1 AA1 4 VAL A 9 ASP A 13 0 SHEET 2 AA1 4 GLY A 50 VAL A 53 1 O ILE A 52 N LEU A 10 SHEET 3 AA1 4 VAL A 73 ARG A 75 1 O GLY A 74 N VAL A 53 SHEET 4 AA1 4 VAL A 95 ASN A 97 1 O MET A 96 N ARG A 75 SHEET 1 AA2 7 GLN A 189 GLN A 190 0 SHEET 2 AA2 7 LYS A 170 TYR A 174 1 N GLY A 173 O GLN A 189 SHEET 3 AA2 7 THR A 147 LEU A 151 1 N LEU A 148 O LYS A 170 SHEET 4 AA2 7 PHE A 202 VAL A 205 1 O THR A 204 N GLY A 149 SHEET 5 AA2 7 VAL A 229 ASN A 233 1 O VAL A 232 N ILE A 203 SHEET 6 AA2 7 CYS A 254 LEU A 259 1 O ALA A 255 N VAL A 229 SHEET 7 AA2 7 VAL A 278 SER A 280 1 O ILE A 279 N ALA A 257 SHEET 1 AA3 7 GLN B 189 GLN B 190 0 SHEET 2 AA3 7 LYS B 170 TYR B 174 1 N THR B 171 O GLN B 189 SHEET 3 AA3 7 THR B 147 LEU B 151 1 N LEU B 148 O LYS B 170 SHEET 4 AA3 7 PHE B 202 VAL B 205 1 O PHE B 202 N GLY B 149 SHEET 5 AA3 7 ARG B 230 ASN B 233 1 O VAL B 232 N ILE B 203 SHEET 6 AA3 7 GLY B 256 LEU B 259 1 O ALA B 258 N ASN B 233 SHEET 7 AA3 7 VAL B 278 SER B 280 1 O ILE B 279 N LEU B 259 CISPEP 1 GLU A 265 PRO A 266 0 -0.63 CISPEP 2 GLU B 265 PRO B 266 0 0.47 CRYST1 43.101 121.638 59.372 90.00 99.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023201 0.000000 0.004080 0.00000 SCALE2 0.000000 0.008221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017101 0.00000