HEADER VIRAL PROTEIN 27-AUG-20 7CWC TITLE AMBIENT-TEMPERATURE SERIAL FEMTOSECOND X-RAY CRYSTAL STRUCTURE OF TITLE 2 SARS-COV-2 MAIN PROTEASE AT 2.1 A RESOLUTION (P212121) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAIN PROTEASE,3CL-PRO,3CLP,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COVID19, SARS-COV-2, DRUG TARGET, SERIAL FEMTOSECOND X-RAY KEYWDS 2 CRYSTALLOGRAPHY, SFX, XFEL, VIRUS PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI REVDAT 5 29-NOV-23 7CWC 1 REMARK REVDAT 4 15-DEC-21 7CWC 1 JRNL REVDAT 3 19-MAY-21 7CWC 1 REMARK REVDAT 2 10-MAR-21 7CWC 1 COMPND REVDAT 1 30-SEP-20 7CWC 0 JRNL AUTH S.DURDAGI,C.DAG,B.DOGAN,M.YIGIN,T.AVSAR,C.BUYUKDAG,I.EROL, JRNL AUTH 2 F.B.ERTEM,S.CALIS,G.YILDIRIM,M.D.ORHAN,O.GUVEN,B.AKSOYDAN, JRNL AUTH 3 E.DESTAN,K.SAHIN,S.O.BESLER,L.OKTAY,A.SHAFIEI,I.TOLU,E.AYAN, JRNL AUTH 4 B.YUKSEL,A.B.PEKSEN,O.GOCENLER,A.D.YUCEL,O.CAN, JRNL AUTH 5 S.OZABRAHAMYAN,A.OLKAN,E.ERDEMOGLU,F.AKSIT,G.TANISALI, JRNL AUTH 6 O.M.YEFANOV,A.BARTY,A.TOLSTIKOVA,G.K.KETAWALA,S.BOTHA, JRNL AUTH 7 E.H.DAO,B.HAYES,M.LIANG,M.H.SEABERG,M.S.HUNTER,A.BATYUK, JRNL AUTH 8 V.MARIANI,Z.SU,F.POITEVIN,C.H.YOON,C.KUPITZ,R.G.SIERRA, JRNL AUTH 9 E.H.SNELL,H.DEMIRCI JRNL TITL NEAR-PHYSIOLOGICAL-TEMPERATURE SERIAL CRYSTALLOGRAPHY JRNL TITL 2 REVEALS CONFORMATIONS OF SARS-COV-2 MAIN PROTEASE ACTIVE JRNL TITL 3 SITE FOR IMPROVED DRUG REPURPOSING. JRNL REF STRUCTURE V. 29 1382 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 34403647 JRNL DOI 10.1016/J.STR.2021.07.007 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX-DEV-3318 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.440 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9700 - 5.0586 0.98 3238 152 0.2180 0.2183 REMARK 3 2 5.0586 - 4.0162 1.00 3151 146 0.1852 0.2245 REMARK 3 3 4.0162 - 3.5088 1.00 3122 148 0.1974 0.2381 REMARK 3 4 3.5088 - 3.1881 1.00 3110 144 0.2223 0.2769 REMARK 3 5 3.1881 - 2.9597 1.00 3090 141 0.2334 0.2771 REMARK 3 6 2.9597 - 2.7852 1.00 3073 144 0.2474 0.2737 REMARK 3 7 2.7852 - 2.6457 1.00 3072 143 0.2637 0.3321 REMARK 3 8 2.6457 - 2.5306 1.00 3069 144 0.2973 0.3054 REMARK 3 9 2.5306 - 2.4332 1.00 3062 140 0.3270 0.3731 REMARK 3 10 2.4332 - 2.3492 1.00 3066 140 0.2834 0.2922 REMARK 3 11 2.3492 - 2.2758 1.00 3030 144 0.2939 0.3058 REMARK 3 12 2.2758 - 2.2107 1.00 3067 135 0.3268 0.3756 REMARK 3 13 2.2107 - 2.1525 1.00 3034 151 0.3700 0.3717 REMARK 3 14 2.1525 - 2.1000 1.00 3044 138 0.4000 0.4042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6033 8.5118 -21.9616 REMARK 3 T TENSOR REMARK 3 T11: 0.3495 T22: 0.3816 REMARK 3 T33: 0.3521 T12: 0.0355 REMARK 3 T13: 0.0248 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.2934 L22: 0.5146 REMARK 3 L33: 2.6103 L12: 0.0120 REMARK 3 L13: 0.8462 L23: 0.5041 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.1890 S13: -0.1500 REMARK 3 S21: 0.0597 S22: -0.0497 S23: 0.1281 REMARK 3 S31: -0.0049 S32: -0.4498 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8773 5.9164 -30.1736 REMARK 3 T TENSOR REMARK 3 T11: 0.3835 T22: 0.3581 REMARK 3 T33: 0.3693 T12: 0.0258 REMARK 3 T13: 0.0026 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.2905 L22: 0.4295 REMARK 3 L33: 1.0621 L12: -0.1374 REMARK 3 L13: -0.2424 L23: 0.4757 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: 0.3065 S13: -0.3394 REMARK 3 S21: 0.0435 S22: -0.0751 S23: -0.1407 REMARK 3 S31: 0.1970 S32: 0.0499 S33: -0.0071 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0591 7.2349 -39.5661 REMARK 3 T TENSOR REMARK 3 T11: 0.4539 T22: 0.5914 REMARK 3 T33: 0.4740 T12: 0.0221 REMARK 3 T13: 0.0982 T23: -0.0877 REMARK 3 L TENSOR REMARK 3 L11: 2.4890 L22: 1.4837 REMARK 3 L33: 2.6674 L12: -0.3462 REMARK 3 L13: 0.5389 L23: -0.5695 REMARK 3 S TENSOR REMARK 3 S11: 0.1578 S12: -0.0694 S13: 0.1724 REMARK 3 S21: -0.2563 S22: 0.0380 S23: -0.2196 REMARK 3 S31: -0.0717 S32: -0.0155 S33: -0.0655 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9765 9.0307 -32.9229 REMARK 3 T TENSOR REMARK 3 T11: 0.3787 T22: 0.4917 REMARK 3 T33: 0.4909 T12: 0.0230 REMARK 3 T13: 0.0392 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.7054 L22: 2.3536 REMARK 3 L33: 2.4705 L12: -0.3738 REMARK 3 L13: -1.0729 L23: -0.0038 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.2166 S13: 0.3140 REMARK 3 S21: 0.1922 S22: 0.0384 S23: 0.1004 REMARK 3 S31: -0.0264 S32: -0.0538 S33: -0.0807 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2718 11.6398 3.1978 REMARK 3 T TENSOR REMARK 3 T11: 0.3915 T22: 0.3141 REMARK 3 T33: 0.4350 T12: -0.0254 REMARK 3 T13: -0.0507 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.2193 L22: 1.9313 REMARK 3 L33: 2.8372 L12: -0.7303 REMARK 3 L13: 0.6740 L23: -0.0467 REMARK 3 S TENSOR REMARK 3 S11: -0.1153 S12: -0.0783 S13: 0.3279 REMARK 3 S21: 0.0455 S22: 0.0067 S23: -0.3160 REMARK 3 S31: -0.4277 S32: 0.2813 S33: 0.1481 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 130 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5709 -1.0811 -5.3088 REMARK 3 T TENSOR REMARK 3 T11: 0.4396 T22: 0.3475 REMARK 3 T33: 0.3882 T12: 0.0149 REMARK 3 T13: -0.0225 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.4725 L22: 2.2111 REMARK 3 L33: 3.2822 L12: -0.2061 REMARK 3 L13: -0.2773 L23: 2.4779 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: 0.0131 S13: 0.0038 REMARK 3 S21: -0.3180 S22: 0.2379 S23: -0.1288 REMARK 3 S31: -0.3159 S32: 0.2901 S33: -0.1331 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0383 -25.1881 -19.9393 REMARK 3 T TENSOR REMARK 3 T11: 0.8589 T22: 0.3675 REMARK 3 T33: 0.5431 T12: 0.2379 REMARK 3 T13: -0.2178 T23: -0.1698 REMARK 3 L TENSOR REMARK 3 L11: 3.8735 L22: 3.7076 REMARK 3 L33: 2.6117 L12: 1.9497 REMARK 3 L13: -1.8601 L23: -1.2447 REMARK 3 S TENSOR REMARK 3 S11: -0.5174 S12: 0.2829 S13: -0.3943 REMARK 3 S21: 1.0210 S22: 0.3506 S23: -0.2880 REMARK 3 S31: -0.1418 S32: 0.5067 S33: -0.0188 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 237 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3586 -17.9636 -17.2424 REMARK 3 T TENSOR REMARK 3 T11: 0.7534 T22: 0.4476 REMARK 3 T33: 0.5177 T12: 0.0210 REMARK 3 T13: 0.0058 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 3.3177 L22: 3.4721 REMARK 3 L33: 3.2809 L12: 0.3663 REMARK 3 L13: 0.3809 L23: 2.4381 REMARK 3 S TENSOR REMARK 3 S11: -0.1300 S12: -0.0969 S13: 0.2579 REMARK 3 S21: 0.3676 S22: 0.1319 S23: -0.1670 REMARK 3 S31: 0.6887 S32: 0.1473 S33: 0.0969 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1300018321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD CXI-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45380 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3105. REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6WQF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE TRIHYDRATE, 0.1 M REMARK 280 TRIS 8.5, 30 % W/V PEG 4000, BATCH MODE, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.60000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 SER A 301 REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 302 REMARK 465 VAL B 303 REMARK 465 THR B 304 REMARK 465 PHE B 305 REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 465 O HOH A 469 2.03 REMARK 500 OD1 ASN B 221 O HOH B 401 2.07 REMARK 500 OD1 ASP B 263 O HOH B 401 2.15 REMARK 500 OD1 ASP A 295 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -115.85 45.89 REMARK 500 ASN A 84 -109.80 59.59 REMARK 500 TYR A 154 -102.37 60.28 REMARK 500 ARG A 298 -55.45 -176.00 REMARK 500 ASP B 33 -117.02 50.03 REMARK 500 ASN B 84 -108.59 59.61 REMARK 500 PRO B 168 47.34 -75.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 118 12.03 REMARK 500 TYR A 118 11.04 REMARK 500 CYS B 85 -10.06 REMARK 500 CYS B 85 -10.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 470 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 471 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 472 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 473 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A 474 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A 475 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 8.30 ANGSTROMS REMARK 525 HOH A 479 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH A 480 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH A 481 DISTANCE = 8.78 ANGSTROMS REMARK 525 HOH B 453 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 454 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 455 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 456 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 457 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B 458 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 459 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 460 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 461 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B 462 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH B 463 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH B 464 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH B 465 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH B 466 DISTANCE = 9.30 ANGSTROMS REMARK 525 HOH B 467 DISTANCE = 9.74 ANGSTROMS REMARK 525 HOH B 468 DISTANCE = 9.83 ANGSTROMS REMARK 525 HOH B 469 DISTANCE = 9.83 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7WCB RELATED DB: PDB DBREF 7CWC A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 7CWC B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQADV 7CWC GLY A -3 UNP P0DTD1 EXPRESSION TAG SEQADV 7CWC SER A -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7CWC HIS A -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7CWC MET A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 7CWC GLY B -3 UNP P0DTD1 EXPRESSION TAG SEQADV 7CWC SER B -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7CWC HIS B -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7CWC MET B 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 310 GLY SER HIS MET SER GLY PHE ARG LYS MET ALA PHE PRO SEQRES 2 A 310 SER GLY LYS VAL GLU GLY CYS MET VAL GLN VAL THR CYS SEQRES 3 A 310 GLY THR THR THR LEU ASN GLY LEU TRP LEU ASP ASP VAL SEQRES 4 A 310 VAL TYR CYS PRO ARG HIS VAL ILE CYS THR SER GLU ASP SEQRES 5 A 310 MET LEU ASN PRO ASN TYR GLU ASP LEU LEU ILE ARG LYS SEQRES 6 A 310 SER ASN HIS ASN PHE LEU VAL GLN ALA GLY ASN VAL GLN SEQRES 7 A 310 LEU ARG VAL ILE GLY HIS SER MET GLN ASN CYS VAL LEU SEQRES 8 A 310 LYS LEU LYS VAL ASP THR ALA ASN PRO LYS THR PRO LYS SEQRES 9 A 310 TYR LYS PHE VAL ARG ILE GLN PRO GLY GLN THR PHE SER SEQRES 10 A 310 VAL LEU ALA CYS TYR ASN GLY SER PRO SER GLY VAL TYR SEQRES 11 A 310 GLN CYS ALA MET ARG PRO ASN PHE THR ILE LYS GLY SER SEQRES 12 A 310 PHE LEU ASN GLY SER CYS GLY SER VAL GLY PHE ASN ILE SEQRES 13 A 310 ASP TYR ASP CYS VAL SER PHE CYS TYR MET HIS HIS MET SEQRES 14 A 310 GLU LEU PRO THR GLY VAL HIS ALA GLY THR ASP LEU GLU SEQRES 15 A 310 GLY ASN PHE TYR GLY PRO PHE VAL ASP ARG GLN THR ALA SEQRES 16 A 310 GLN ALA ALA GLY THR ASP THR THR ILE THR VAL ASN VAL SEQRES 17 A 310 LEU ALA TRP LEU TYR ALA ALA VAL ILE ASN GLY ASP ARG SEQRES 18 A 310 TRP PHE LEU ASN ARG PHE THR THR THR LEU ASN ASP PHE SEQRES 19 A 310 ASN LEU VAL ALA MET LYS TYR ASN TYR GLU PRO LEU THR SEQRES 20 A 310 GLN ASP HIS VAL ASP ILE LEU GLY PRO LEU SER ALA GLN SEQRES 21 A 310 THR GLY ILE ALA VAL LEU ASP MET CYS ALA SER LEU LYS SEQRES 22 A 310 GLU LEU LEU GLN ASN GLY MET ASN GLY ARG THR ILE LEU SEQRES 23 A 310 GLY SER ALA LEU LEU GLU ASP GLU PHE THR PRO PHE ASP SEQRES 24 A 310 VAL VAL ARG GLN CYS SER GLY VAL THR PHE GLN SEQRES 1 B 310 GLY SER HIS MET SER GLY PHE ARG LYS MET ALA PHE PRO SEQRES 2 B 310 SER GLY LYS VAL GLU GLY CYS MET VAL GLN VAL THR CYS SEQRES 3 B 310 GLY THR THR THR LEU ASN GLY LEU TRP LEU ASP ASP VAL SEQRES 4 B 310 VAL TYR CYS PRO ARG HIS VAL ILE CYS THR SER GLU ASP SEQRES 5 B 310 MET LEU ASN PRO ASN TYR GLU ASP LEU LEU ILE ARG LYS SEQRES 6 B 310 SER ASN HIS ASN PHE LEU VAL GLN ALA GLY ASN VAL GLN SEQRES 7 B 310 LEU ARG VAL ILE GLY HIS SER MET GLN ASN CYS VAL LEU SEQRES 8 B 310 LYS LEU LYS VAL ASP THR ALA ASN PRO LYS THR PRO LYS SEQRES 9 B 310 TYR LYS PHE VAL ARG ILE GLN PRO GLY GLN THR PHE SER SEQRES 10 B 310 VAL LEU ALA CYS TYR ASN GLY SER PRO SER GLY VAL TYR SEQRES 11 B 310 GLN CYS ALA MET ARG PRO ASN PHE THR ILE LYS GLY SER SEQRES 12 B 310 PHE LEU ASN GLY SER CYS GLY SER VAL GLY PHE ASN ILE SEQRES 13 B 310 ASP TYR ASP CYS VAL SER PHE CYS TYR MET HIS HIS MET SEQRES 14 B 310 GLU LEU PRO THR GLY VAL HIS ALA GLY THR ASP LEU GLU SEQRES 15 B 310 GLY ASN PHE TYR GLY PRO PHE VAL ASP ARG GLN THR ALA SEQRES 16 B 310 GLN ALA ALA GLY THR ASP THR THR ILE THR VAL ASN VAL SEQRES 17 B 310 LEU ALA TRP LEU TYR ALA ALA VAL ILE ASN GLY ASP ARG SEQRES 18 B 310 TRP PHE LEU ASN ARG PHE THR THR THR LEU ASN ASP PHE SEQRES 19 B 310 ASN LEU VAL ALA MET LYS TYR ASN TYR GLU PRO LEU THR SEQRES 20 B 310 GLN ASP HIS VAL ASP ILE LEU GLY PRO LEU SER ALA GLN SEQRES 21 B 310 THR GLY ILE ALA VAL LEU ASP MET CYS ALA SER LEU LYS SEQRES 22 B 310 GLU LEU LEU GLN ASN GLY MET ASN GLY ARG THR ILE LEU SEQRES 23 B 310 GLY SER ALA LEU LEU GLU ASP GLU PHE THR PRO PHE ASP SEQRES 24 B 310 VAL VAL ARG GLN CYS SER GLY VAL THR PHE GLN FORMUL 3 HOH *150(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 MET A 235 1 10 HELIX 7 AA7 LYS A 236 ASN A 238 5 3 HELIX 8 AA8 THR A 243 LEU A 250 1 8 HELIX 9 AA9 LEU A 250 THR A 257 1 8 HELIX 10 AB1 ALA A 260 GLY A 275 1 16 HELIX 11 AB2 THR A 292 VAL A 297 1 6 HELIX 12 AB3 SER B 10 GLY B 15 1 6 HELIX 13 AB4 HIS B 41 CYS B 44 5 4 HELIX 14 AB5 ASN B 53 LYS B 61 1 9 HELIX 15 AB6 SER B 62 HIS B 64 5 3 HELIX 16 AB7 ILE B 200 ASN B 214 1 15 HELIX 17 AB8 THR B 226 TYR B 237 1 12 HELIX 18 AB9 THR B 243 LEU B 250 1 8 HELIX 19 AC1 LEU B 250 GLY B 258 1 9 HELIX 20 AC2 ALA B 260 ASN B 274 1 15 HELIX 21 AC3 THR B 292 SER B 301 1 10 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O TYR A 126 N VAL A 114 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N VAL B 68 O LEU B 75 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N ILE B 78 O LYS B 90 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 VAL B 157 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ILE B 152 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 VAL B 157 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 CRYST1 69.200 104.300 105.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009470 0.00000