HEADER SUGAR BINDING PROTEIN 01-SEP-20 7CXA TITLE STRUCTURE OF HUMAN GALECTIN-3 CRD IN COMPLEX WITH TD-139 BELONGING TO TITLE 2 P31 SPACE GROUP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBOHYDRARE RECOGNITION DOMAIN; COMPND 5 SYNONYM: GAL-3,35 KDA LECTIN,CARBOHYDRATE-BINDING PROTEIN 35,CBP 35, COMPND 6 GALACTOSE-SPECIFIC LECTIN 3,GALACTOSIDE-BINDING PROTEIN,GALBP,IGE- COMPND 7 BINDING PROTEIN,L-31,LAMININ-BINDING PROTEIN,LECTIN L-29,MAC-2 COMPND 8 ANTIGEN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LGALS3, MAC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 N-HIS-TVMV KEYWDS BETA-GALACTOSE BINDING PROTEIN, CARBOHYDRATE, SUGAR BINDING PROTEIN, KEYWDS 2 TD-139 EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR REVDAT 3 29-NOV-23 7CXA 1 REMARK REVDAT 2 16-FEB-22 7CXA 1 JRNL REVDAT 1 01-SEP-21 7CXA 0 JRNL AUTH A.KUMAR,M.PAUL,M.PANDA,S.JAYARAM,N.KALIDINDI,H.SALE, JRNL AUTH 2 M.VETRICHELVAN,A.GUPTA,A.MATHUR,B.BENO,A.REGUEIRO-REN, JRNL AUTH 3 D.CHENG,M.RAMARAO,K.GHOSH JRNL TITL MOLECULAR MECHANISM OF INTERSPECIES DIFFERENCES IN THE JRNL TITL 2 BINDING AFFINITY OF TD139 TO GALECTIN-3. JRNL REF GLYCOBIOLOGY V. 31 1390 2021 JRNL REFN ESSN 1460-2423 JRNL PMID 34228782 JRNL DOI 10.1093/GLYCOB/CWAB072 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1428 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2134 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 20.71000 REMARK 3 B22 (A**2) : 20.71000 REMARK 3 B33 (A**2) : -41.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.398 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2285 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 60 ; 0.000 ; 0.010 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3124 ; 1.431 ; 1.699 REMARK 3 BOND ANGLES OTHERS (DEGREES): 132 ; 0.630 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 5.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;40.920 ;22.137 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;18.262 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ; 6.846 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2026 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 20 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 114 249 B 114 249 3879 0.080 0.050 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 4 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.035 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.322 REMARK 3 TWIN DOMAIN : 3 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.606 REMARK 3 TWIN DOMAIN : 4 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.038 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20163 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.73800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZSL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-35% PEG 4000/6000, 0.1M TRIS (PH REMARK 280 7.5 - PH 8.5), 0.1M MGCL2, 0.4M NASCN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.87700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.75400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 86 REMARK 465 GLY A 87 REMARK 465 SER A 88 REMARK 465 SER A 89 REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 SER A 96 REMARK 465 SER A 97 REMARK 465 GLY A 98 REMARK 465 GLU A 99 REMARK 465 THR A 100 REMARK 465 VAL A 101 REMARK 465 ARG A 102 REMARK 465 PHE A 103 REMARK 465 GLN A 104 REMARK 465 GLY A 105 REMARK 465 HIS A 106 REMARK 465 MET A 107 REMARK 465 GLY A 108 REMARK 465 ALA A 109 REMARK 465 PRO A 110 REMARK 465 ALA A 111 REMARK 465 GLY A 112 REMARK 465 PRO A 113 REMARK 465 MET B 86 REMARK 465 GLY B 87 REMARK 465 SER B 88 REMARK 465 SER B 89 REMARK 465 HIS B 90 REMARK 465 HIS B 91 REMARK 465 HIS B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 SER B 96 REMARK 465 SER B 97 REMARK 465 GLY B 98 REMARK 465 GLU B 99 REMARK 465 THR B 100 REMARK 465 VAL B 101 REMARK 465 ARG B 102 REMARK 465 PHE B 103 REMARK 465 GLN B 104 REMARK 465 GLY B 105 REMARK 465 HIS B 106 REMARK 465 MET B 107 REMARK 465 GLY B 108 REMARK 465 ALA B 109 REMARK 465 PRO B 110 REMARK 465 ALA B 111 REMARK 465 GLY B 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 127 CG1 CG2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 179 CG OD1 ND2 REMARK 470 ASN A 180 CG OD1 ND2 REMARK 470 LYS A 196 NZ REMARK 470 LEU A 203 CD1 CD2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 ASN A 229 OD1 ND2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ILE A 231 CD1 REMARK 470 ILE B 115 CG1 CG2 CD1 REMARK 470 ASN B 141 OD1 ND2 REMARK 470 ILE B 145 CD1 REMARK 470 ARG B 169 NE CZ NH1 NH2 REMARK 470 LYS B 176 NZ REMARK 470 ARG B 183 CD NE CZ NH1 NH2 REMARK 470 LYS B 196 CD CE NZ REMARK 470 LYS B 210 CE NZ REMARK 470 ASN B 222 CG OD1 ND2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 LYS B 227 CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 THR B 243 OG1 CG2 REMARK 470 SER B 246 OG REMARK 470 ILE B 250 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 433 2.08 REMARK 500 NH1 ARG A 129 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 129 0.72 97.05 REMARK 500 ARG B 129 28.49 83.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TD2 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TD2 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7CXB RELATED DB: PDB REMARK 900 RELATED ID: 7CXC RELATED DB: PDB REMARK 900 RELATED ID: 7CXD RELATED DB: PDB DBREF 7CXA A 108 250 UNP P17931 LEG3_HUMAN 108 250 DBREF 7CXA B 108 250 UNP P17931 LEG3_HUMAN 108 250 SEQADV 7CXA MET A 86 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLY A 87 UNP P17931 EXPRESSION TAG SEQADV 7CXA SER A 88 UNP P17931 EXPRESSION TAG SEQADV 7CXA SER A 89 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS A 90 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS A 91 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS A 92 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS A 93 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS A 94 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS A 95 UNP P17931 EXPRESSION TAG SEQADV 7CXA SER A 96 UNP P17931 EXPRESSION TAG SEQADV 7CXA SER A 97 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLY A 98 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLU A 99 UNP P17931 EXPRESSION TAG SEQADV 7CXA THR A 100 UNP P17931 EXPRESSION TAG SEQADV 7CXA VAL A 101 UNP P17931 EXPRESSION TAG SEQADV 7CXA ARG A 102 UNP P17931 EXPRESSION TAG SEQADV 7CXA PHE A 103 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLN A 104 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLY A 105 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS A 106 UNP P17931 EXPRESSION TAG SEQADV 7CXA MET A 107 UNP P17931 EXPRESSION TAG SEQADV 7CXA MET B 86 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLY B 87 UNP P17931 EXPRESSION TAG SEQADV 7CXA SER B 88 UNP P17931 EXPRESSION TAG SEQADV 7CXA SER B 89 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS B 90 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS B 91 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS B 92 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS B 93 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS B 94 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS B 95 UNP P17931 EXPRESSION TAG SEQADV 7CXA SER B 96 UNP P17931 EXPRESSION TAG SEQADV 7CXA SER B 97 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLY B 98 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLU B 99 UNP P17931 EXPRESSION TAG SEQADV 7CXA THR B 100 UNP P17931 EXPRESSION TAG SEQADV 7CXA VAL B 101 UNP P17931 EXPRESSION TAG SEQADV 7CXA ARG B 102 UNP P17931 EXPRESSION TAG SEQADV 7CXA PHE B 103 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLN B 104 UNP P17931 EXPRESSION TAG SEQADV 7CXA GLY B 105 UNP P17931 EXPRESSION TAG SEQADV 7CXA HIS B 106 UNP P17931 EXPRESSION TAG SEQADV 7CXA MET B 107 UNP P17931 EXPRESSION TAG SEQRES 1 A 165 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 165 GLU THR VAL ARG PHE GLN GLY HIS MET GLY ALA PRO ALA SEQRES 3 A 165 GLY PRO LEU ILE VAL PRO TYR ASN LEU PRO LEU PRO GLY SEQRES 4 A 165 GLY VAL VAL PRO ARG MET LEU ILE THR ILE LEU GLY THR SEQRES 5 A 165 VAL LYS PRO ASN ALA ASN ARG ILE ALA LEU ASP PHE GLN SEQRES 6 A 165 ARG GLY ASN ASP VAL ALA PHE HIS PHE ASN PRO ARG PHE SEQRES 7 A 165 ASN GLU ASN ASN ARG ARG VAL ILE VAL CYS ASN THR LYS SEQRES 8 A 165 LEU ASP ASN ASN TRP GLY ARG GLU GLU ARG GLN SER VAL SEQRES 9 A 165 PHE PRO PHE GLU SER GLY LYS PRO PHE LYS ILE GLN VAL SEQRES 10 A 165 LEU VAL GLU PRO ASP HIS PHE LYS VAL ALA VAL ASN ASP SEQRES 11 A 165 ALA HIS LEU LEU GLN TYR ASN HIS ARG VAL LYS LYS LEU SEQRES 12 A 165 ASN GLU ILE SER LYS LEU GLY ILE SER GLY ASP ILE ASP SEQRES 13 A 165 LEU THR SER ALA SER TYR THR MET ILE SEQRES 1 B 165 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 165 GLU THR VAL ARG PHE GLN GLY HIS MET GLY ALA PRO ALA SEQRES 3 B 165 GLY PRO LEU ILE VAL PRO TYR ASN LEU PRO LEU PRO GLY SEQRES 4 B 165 GLY VAL VAL PRO ARG MET LEU ILE THR ILE LEU GLY THR SEQRES 5 B 165 VAL LYS PRO ASN ALA ASN ARG ILE ALA LEU ASP PHE GLN SEQRES 6 B 165 ARG GLY ASN ASP VAL ALA PHE HIS PHE ASN PRO ARG PHE SEQRES 7 B 165 ASN GLU ASN ASN ARG ARG VAL ILE VAL CYS ASN THR LYS SEQRES 8 B 165 LEU ASP ASN ASN TRP GLY ARG GLU GLU ARG GLN SER VAL SEQRES 9 B 165 PHE PRO PHE GLU SER GLY LYS PRO PHE LYS ILE GLN VAL SEQRES 10 B 165 LEU VAL GLU PRO ASP HIS PHE LYS VAL ALA VAL ASN ASP SEQRES 11 B 165 ALA HIS LEU LEU GLN TYR ASN HIS ARG VAL LYS LYS LEU SEQRES 12 B 165 ASN GLU ILE SER LYS LEU GLY ILE SER GLY ASP ILE ASP SEQRES 13 B 165 LEU THR SER ALA SER TYR THR MET ILE HET CL A 301 1 HET TD2 A 302 75 HET CL B 301 1 HET TD2 B 302 75 HETNAM CL CHLORIDE ION HETNAM TD2 3-DEOXY-3-[4-(3-FLUOROPHENYL)-1H-1,2,3-TRIAZOL-1-YL]- HETNAM 2 TD2 BETA-D-GALACTOPYRANOSYL 3-DEOXY-3-[4-(3-FLUOROPHENYL)- HETNAM 3 TD2 1H-1,2,3-TRIAZOL-1-YL]-1-THIO-BETA-D-GALACTOPYRANOSIDE FORMUL 3 CL 2(CL 1-) FORMUL 4 TD2 2(C28 H30 F2 N6 O8 S) FORMUL 7 HOH *104(H2 O) HELIX 1 AA1 LYS A 227 ILE A 231 5 5 HELIX 2 AA2 LYS B 227 ILE B 231 5 5 SHEET 1 AA1 6 TYR A 118 PRO A 121 0 SHEET 2 AA1 6 LYS A 233 GLY A 238 -1 O LEU A 234 N LEU A 120 SHEET 3 AA1 6 ILE A 145 ARG A 151 -1 N GLN A 150 O LYS A 233 SHEET 4 AA1 6 ASP A 154 ARG A 162 -1 O PHE A 157 N PHE A 149 SHEET 5 AA1 6 VAL A 170 LEU A 177 -1 O VAL A 170 N ARG A 162 SHEET 6 AA1 6 ASN A 180 TRP A 181 -1 O ASN A 180 N LEU A 177 SHEET 1 AA2 6 TYR A 118 PRO A 121 0 SHEET 2 AA2 6 LYS A 233 GLY A 238 -1 O LEU A 234 N LEU A 120 SHEET 3 AA2 6 ILE A 145 ARG A 151 -1 N GLN A 150 O LYS A 233 SHEET 4 AA2 6 ASP A 154 ARG A 162 -1 O PHE A 157 N PHE A 149 SHEET 5 AA2 6 VAL A 170 LEU A 177 -1 O VAL A 170 N ARG A 162 SHEET 6 AA2 6 GLU A 185 GLN A 187 -1 O GLU A 185 N CYS A 173 SHEET 1 AA3 5 ALA A 216 ASN A 222 0 SHEET 2 AA3 5 HIS A 208 VAL A 213 -1 N VAL A 211 O LEU A 218 SHEET 3 AA3 5 LYS A 196 VAL A 204 -1 N LEU A 203 O LYS A 210 SHEET 4 AA3 5 MET A 130 VAL A 138 -1 N ILE A 134 O ILE A 200 SHEET 5 AA3 5 ILE A 240 MET A 249 -1 O ASP A 241 N THR A 137 SHEET 1 AA4 6 TYR B 118 PRO B 121 0 SHEET 2 AA4 6 LYS B 233 GLY B 238 -1 O LEU B 234 N LEU B 120 SHEET 3 AA4 6 ILE B 145 ARG B 151 -1 N GLN B 150 O LYS B 233 SHEET 4 AA4 6 ASP B 154 ARG B 162 -1 O PHE B 157 N PHE B 149 SHEET 5 AA4 6 VAL B 170 LEU B 177 -1 O VAL B 170 N ARG B 162 SHEET 6 AA4 6 ASN B 180 TRP B 181 -1 O ASN B 180 N LEU B 177 SHEET 1 AA5 6 TYR B 118 PRO B 121 0 SHEET 2 AA5 6 LYS B 233 GLY B 238 -1 O LEU B 234 N LEU B 120 SHEET 3 AA5 6 ILE B 145 ARG B 151 -1 N GLN B 150 O LYS B 233 SHEET 4 AA5 6 ASP B 154 ARG B 162 -1 O PHE B 157 N PHE B 149 SHEET 5 AA5 6 VAL B 170 LEU B 177 -1 O VAL B 170 N ARG B 162 SHEET 6 AA5 6 GLU B 185 GLN B 187 -1 O GLU B 185 N CYS B 173 SHEET 1 AA6 5 ALA B 216 ASN B 222 0 SHEET 2 AA6 5 HIS B 208 VAL B 213 -1 N VAL B 211 O LEU B 218 SHEET 3 AA6 5 LYS B 196 VAL B 204 -1 N LEU B 203 O LYS B 210 SHEET 4 AA6 5 MET B 130 VAL B 138 -1 N ILE B 132 O VAL B 202 SHEET 5 AA6 5 ILE B 240 MET B 249 -1 O ASP B 241 N THR B 137 CISPEP 1 VAL A 116 PRO A 117 0 2.77 CISPEP 2 VAL B 116 PRO B 117 0 -0.27 SITE 1 AC1 1 ASN A 160 SITE 1 AC2 16 ARG A 144 ILE A 145 ALA A 146 HIS A 158 SITE 2 AC2 16 ASN A 160 ARG A 162 GLU A 165 ASN A 174 SITE 3 AC2 16 GLU A 184 ARG A 186 LEU B 122 PRO B 123 SITE 4 AC2 16 ARG B 162 GLU B 165 ASN B 166 TD2 B 302 SITE 1 AC3 1 TD2 B 302 SITE 1 AC4 18 ARG A 162 GLU A 165 ASN A 166 TD2 A 302 SITE 2 AC4 18 HOH A 415 ARG B 144 ILE B 145 ALA B 146 SITE 3 AC4 18 HIS B 158 ASN B 160 ARG B 162 GLU B 165 SITE 4 AC4 18 ASN B 174 GLU B 184 ARG B 186 CL B 301 SITE 5 AC4 18 HOH B 411 HOH B 419 CRYST1 40.843 40.843 152.631 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024484 0.014136 0.000000 0.00000 SCALE2 0.000000 0.028272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006552 0.00000