HEADER SUGAR BINDING PROTEIN 01-SEP-20 7CXD TITLE XRAY STRUCTURE OF RAT GALECTIN-3 CRD IN COMPLEX WITH TD-139 BELONGING TITLE 2 TO P121 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-3; COMPND 3 CHAIN: A, B, D, E; COMPND 4 FRAGMENT: CARBOHYDRARE RECOGNITION DOMAIN; COMPND 5 SYNONYM: GAL-3,35 KDA LECTIN,CARBOHYDRATE-BINDING PROTEIN 35,CBP 35, COMPND 6 GALACTOSE-SPECIFIC LECTIN 3,IGE-BINDING PROTEIN,LAMININ-BINDING COMPND 7 PROTEIN,LECTIN L-29,MAC-2 ANTIGEN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: LGALS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-GALACTOSE BINDING PROTEIN, CARBOHYDRATE, SUGAR BINDING PROTEIN, KEYWDS 2 TD-139 EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR REVDAT 3 29-NOV-23 7CXD 1 REMARK REVDAT 2 16-FEB-22 7CXD 1 JRNL REVDAT 1 01-SEP-21 7CXD 0 JRNL AUTH A.KUMAR,M.PAUL,M.PANDA,S.JAYARAM,N.KALIDINDI,H.SALE, JRNL AUTH 2 M.VETRICHELVAN,A.GUPTA,A.MATHUR,B.BENO,A.REGUEIRO-REN, JRNL AUTH 3 D.CHENG,M.RAMARAO,K.GHOSH JRNL TITL MOLECULAR MECHANISM OF INTERSPECIES DIFFERENCES IN THE JRNL TITL 2 BINDING AFFINITY OF TD139 TO GALECTIN-3. JRNL REF GLYCOBIOLOGY V. 31 1390 2021 JRNL REFN ESSN 1460-2423 JRNL PMID 34228782 JRNL DOI 10.1093/GLYCOB/CWAB072 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 48234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2405 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.01 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 965 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2633 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 911 REMARK 3 BIN R VALUE (WORKING SET) : 0.2623 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 54 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4287 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 185 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.44270 REMARK 3 B22 (A**2) : 1.97020 REMARK 3 B33 (A**2) : -12.41280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.90860 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.163 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.164 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.139 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4747 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6577 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1615 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 924 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4747 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 601 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5276 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.91 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 61.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CXA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-35% PEG 4000/6000, 0.1M TRIS (PH REMARK 280 7.5 TO PH 8.5), 0.1M MGCL2, 0.4M NASCN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.35600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 117 REMARK 465 HIS A 118 REMARK 465 MET A 119 REMARK 465 GLY A 120 REMARK 465 ALA A 121 REMARK 465 PRO A 122 REMARK 465 THR A 123 REMARK 465 GLY A 124 REMARK 465 GLY B 117 REMARK 465 HIS B 118 REMARK 465 MET B 119 REMARK 465 GLY B 120 REMARK 465 ALA B 121 REMARK 465 PRO B 122 REMARK 465 THR B 123 REMARK 465 GLY B 124 REMARK 465 GLY D 117 REMARK 465 HIS D 118 REMARK 465 MET D 119 REMARK 465 GLY D 120 REMARK 465 ALA D 121 REMARK 465 PRO D 122 REMARK 465 THR D 123 REMARK 465 GLY D 124 REMARK 465 GLY E 117 REMARK 465 HIS E 118 REMARK 465 MET E 119 REMARK 465 GLY E 120 REMARK 465 ALA E 121 REMARK 465 PRO E 122 REMARK 465 THR E 123 REMARK 465 GLY E 124 REMARK 465 PRO E 125 REMARK 465 LEU E 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ARG A 180 CD NE CZ NH1 NH2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 153 CG OD1 ND2 REMARK 470 ASN B 165 CG OD1 ND2 REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 199 NE2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 LYS B 222 CD CE NZ REMARK 470 VAL B 228 CG1 CG2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 ARG B 241 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 163 CE NZ REMARK 470 ASN D 165 CG OD1 ND2 REMARK 470 ARG D 180 CD NE CZ NH1 NH2 REMARK 470 GLN D 189 CG CD OE1 NE2 REMARK 470 ARG D 195 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 205 CD OE1 OE2 REMARK 470 SER D 206 OG REMARK 470 LYS D 208 CD CE NZ REMARK 470 ARG D 241 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 141 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 163 CG CD CE NZ REMARK 470 ARG E 195 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 199 NE2 REMARK 470 SER E 200 OG REMARK 470 GLU E 217 CG CD OE1 OE2 REMARK 470 LYS E 222 CE NZ REMARK 470 VAL E 228 CG1 CG2 REMARK 470 ARG E 241 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 141 1.92 85.05 REMARK 500 ASN A 176 73.19 -151.77 REMARK 500 ARG B 141 0.61 84.59 REMARK 500 ASN B 176 73.41 -150.18 REMARK 500 ARG D 141 1.54 85.36 REMARK 500 ARG E 141 -3.45 86.57 REMARK 500 ASN E 176 70.35 -150.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TD2 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TD2 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TD2 D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TD2 E 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7CXA RELATED DB: PDB REMARK 900 RELATED ID: 7CXB RELATED DB: PDB REMARK 900 RELATED ID: 7CXC RELATED DB: PDB DBREF 7CXD A 120 262 UNP P08699 LEG3_RAT 120 262 DBREF 7CXD B 120 262 UNP P08699 LEG3_RAT 120 262 DBREF 7CXD D 120 262 UNP P08699 LEG3_RAT 120 262 DBREF 7CXD E 120 262 UNP P08699 LEG3_RAT 120 262 SEQADV 7CXD GLY A 117 UNP P08699 EXPRESSION TAG SEQADV 7CXD HIS A 118 UNP P08699 EXPRESSION TAG SEQADV 7CXD MET A 119 UNP P08699 EXPRESSION TAG SEQADV 7CXD GLY B 117 UNP P08699 EXPRESSION TAG SEQADV 7CXD HIS B 118 UNP P08699 EXPRESSION TAG SEQADV 7CXD MET B 119 UNP P08699 EXPRESSION TAG SEQADV 7CXD GLY D 117 UNP P08699 EXPRESSION TAG SEQADV 7CXD HIS D 118 UNP P08699 EXPRESSION TAG SEQADV 7CXD MET D 119 UNP P08699 EXPRESSION TAG SEQADV 7CXD GLY E 117 UNP P08699 EXPRESSION TAG SEQADV 7CXD HIS E 118 UNP P08699 EXPRESSION TAG SEQADV 7CXD MET E 119 UNP P08699 EXPRESSION TAG SEQRES 1 A 146 GLY HIS MET GLY ALA PRO THR GLY PRO LEU THR VAL PRO SEQRES 2 A 146 TYR ASP MET PRO LEU PRO GLY GLY VAL MET PRO ARG MET SEQRES 3 A 146 LEU ILE THR ILE ILE GLY THR VAL LYS PRO ASN ALA ASN SEQRES 4 A 146 SER ILE THR LEU ASN PHE LYS LYS GLY ASN ASP ILE ALA SEQRES 5 A 146 PHE HIS PHE ASN PRO ARG PHE ASN GLU ASN ASN ARG ARG SEQRES 6 A 146 VAL ILE VAL CYS ASN THR LYS GLN ASP ASN ASN TRP GLY SEQRES 7 A 146 ARG GLU GLU ARG GLN SER ALA PHE PRO PHE GLU SER GLY SEQRES 8 A 146 LYS PRO PHE LYS ILE GLN VAL LEU VAL GLU ALA ASP HIS SEQRES 9 A 146 PHE LYS VAL ALA VAL ASN ASP VAL HIS LEU LEU GLN TYR SEQRES 10 A 146 ASN HIS ARG MET LYS ASN LEU ARG GLU ILE SER GLN LEU SEQRES 11 A 146 GLY ILE ILE GLY ASP ILE THR LEU THR SER ALA SER HIS SEQRES 12 A 146 ALA MET ILE SEQRES 1 B 146 GLY HIS MET GLY ALA PRO THR GLY PRO LEU THR VAL PRO SEQRES 2 B 146 TYR ASP MET PRO LEU PRO GLY GLY VAL MET PRO ARG MET SEQRES 3 B 146 LEU ILE THR ILE ILE GLY THR VAL LYS PRO ASN ALA ASN SEQRES 4 B 146 SER ILE THR LEU ASN PHE LYS LYS GLY ASN ASP ILE ALA SEQRES 5 B 146 PHE HIS PHE ASN PRO ARG PHE ASN GLU ASN ASN ARG ARG SEQRES 6 B 146 VAL ILE VAL CYS ASN THR LYS GLN ASP ASN ASN TRP GLY SEQRES 7 B 146 ARG GLU GLU ARG GLN SER ALA PHE PRO PHE GLU SER GLY SEQRES 8 B 146 LYS PRO PHE LYS ILE GLN VAL LEU VAL GLU ALA ASP HIS SEQRES 9 B 146 PHE LYS VAL ALA VAL ASN ASP VAL HIS LEU LEU GLN TYR SEQRES 10 B 146 ASN HIS ARG MET LYS ASN LEU ARG GLU ILE SER GLN LEU SEQRES 11 B 146 GLY ILE ILE GLY ASP ILE THR LEU THR SER ALA SER HIS SEQRES 12 B 146 ALA MET ILE SEQRES 1 D 146 GLY HIS MET GLY ALA PRO THR GLY PRO LEU THR VAL PRO SEQRES 2 D 146 TYR ASP MET PRO LEU PRO GLY GLY VAL MET PRO ARG MET SEQRES 3 D 146 LEU ILE THR ILE ILE GLY THR VAL LYS PRO ASN ALA ASN SEQRES 4 D 146 SER ILE THR LEU ASN PHE LYS LYS GLY ASN ASP ILE ALA SEQRES 5 D 146 PHE HIS PHE ASN PRO ARG PHE ASN GLU ASN ASN ARG ARG SEQRES 6 D 146 VAL ILE VAL CYS ASN THR LYS GLN ASP ASN ASN TRP GLY SEQRES 7 D 146 ARG GLU GLU ARG GLN SER ALA PHE PRO PHE GLU SER GLY SEQRES 8 D 146 LYS PRO PHE LYS ILE GLN VAL LEU VAL GLU ALA ASP HIS SEQRES 9 D 146 PHE LYS VAL ALA VAL ASN ASP VAL HIS LEU LEU GLN TYR SEQRES 10 D 146 ASN HIS ARG MET LYS ASN LEU ARG GLU ILE SER GLN LEU SEQRES 11 D 146 GLY ILE ILE GLY ASP ILE THR LEU THR SER ALA SER HIS SEQRES 12 D 146 ALA MET ILE SEQRES 1 E 146 GLY HIS MET GLY ALA PRO THR GLY PRO LEU THR VAL PRO SEQRES 2 E 146 TYR ASP MET PRO LEU PRO GLY GLY VAL MET PRO ARG MET SEQRES 3 E 146 LEU ILE THR ILE ILE GLY THR VAL LYS PRO ASN ALA ASN SEQRES 4 E 146 SER ILE THR LEU ASN PHE LYS LYS GLY ASN ASP ILE ALA SEQRES 5 E 146 PHE HIS PHE ASN PRO ARG PHE ASN GLU ASN ASN ARG ARG SEQRES 6 E 146 VAL ILE VAL CYS ASN THR LYS GLN ASP ASN ASN TRP GLY SEQRES 7 E 146 ARG GLU GLU ARG GLN SER ALA PHE PRO PHE GLU SER GLY SEQRES 8 E 146 LYS PRO PHE LYS ILE GLN VAL LEU VAL GLU ALA ASP HIS SEQRES 9 E 146 PHE LYS VAL ALA VAL ASN ASP VAL HIS LEU LEU GLN TYR SEQRES 10 E 146 ASN HIS ARG MET LYS ASN LEU ARG GLU ILE SER GLN LEU SEQRES 11 E 146 GLY ILE ILE GLY ASP ILE THR LEU THR SER ALA SER HIS SEQRES 12 E 146 ALA MET ILE HET BR A 301 1 HET TD2 A 302 75 HET BR B 301 1 HET TD2 B 302 75 HET BR D 301 1 HET BR D 302 1 HET TD2 D 303 75 HET BR E 301 1 HET TD2 E 302 75 HETNAM BR BROMIDE ION HETNAM TD2 3-DEOXY-3-[4-(3-FLUOROPHENYL)-1H-1,2,3-TRIAZOL-1-YL]- HETNAM 2 TD2 BETA-D-GALACTOPYRANOSYL 3-DEOXY-3-[4-(3-FLUOROPHENYL)- HETNAM 3 TD2 1H-1,2,3-TRIAZOL-1-YL]-1-THIO-BETA-D-GALACTOPYRANOSIDE FORMUL 5 BR 5(BR 1-) FORMUL 6 TD2 4(C28 H30 F2 N6 O8 S) FORMUL 14 HOH *266(H2 O) HELIX 1 AA1 ASN A 239 ILE A 243 5 5 HELIX 2 AA2 ASN B 239 ILE B 243 5 5 HELIX 3 AA3 ASN D 239 ILE D 243 5 5 HELIX 4 AA4 ASN E 239 ILE E 243 5 5 SHEET 1 AA1 6 TYR A 130 PRO A 133 0 SHEET 2 AA1 6 GLN A 245 GLY A 250 -1 O LEU A 246 N MET A 132 SHEET 3 AA1 6 ILE A 157 LYS A 163 -1 N ASN A 160 O GLY A 247 SHEET 4 AA1 6 ASP A 166 GLU A 177 -1 O PHE A 169 N PHE A 161 SHEET 5 AA1 6 ARG A 180 GLN A 189 -1 O VAL A 182 N ARG A 174 SHEET 6 AA1 6 ASN A 192 TRP A 193 -1 O ASN A 192 N GLN A 189 SHEET 1 AA2 6 TYR A 130 PRO A 133 0 SHEET 2 AA2 6 GLN A 245 GLY A 250 -1 O LEU A 246 N MET A 132 SHEET 3 AA2 6 ILE A 157 LYS A 163 -1 N ASN A 160 O GLY A 247 SHEET 4 AA2 6 ASP A 166 GLU A 177 -1 O PHE A 169 N PHE A 161 SHEET 5 AA2 6 ARG A 180 GLN A 189 -1 O VAL A 182 N ARG A 174 SHEET 6 AA2 6 GLU A 197 GLN A 199 -1 O GLN A 199 N ILE A 183 SHEET 1 AA3 5 VAL A 228 ASN A 234 0 SHEET 2 AA3 5 HIS A 220 VAL A 225 -1 N VAL A 223 O LEU A 231 SHEET 3 AA3 5 PRO A 209 VAL A 216 -1 N GLN A 213 O ALA A 224 SHEET 4 AA3 5 MET A 142 VAL A 150 -1 N ILE A 146 O ILE A 212 SHEET 5 AA3 5 ILE A 252 MET A 261 -1 O ALA A 260 N LEU A 143 SHEET 1 AA4 6 TYR B 130 PRO B 133 0 SHEET 2 AA4 6 GLN B 245 GLY B 250 -1 O LEU B 246 N MET B 132 SHEET 3 AA4 6 ILE B 157 LYS B 163 -1 N ASN B 160 O GLY B 247 SHEET 4 AA4 6 ASP B 166 GLU B 177 -1 O PHE B 169 N PHE B 161 SHEET 5 AA4 6 ARG B 180 GLN B 189 -1 O VAL B 182 N ARG B 174 SHEET 6 AA4 6 ASN B 192 TRP B 193 -1 O ASN B 192 N GLN B 189 SHEET 1 AA5 6 TYR B 130 PRO B 133 0 SHEET 2 AA5 6 GLN B 245 GLY B 250 -1 O LEU B 246 N MET B 132 SHEET 3 AA5 6 ILE B 157 LYS B 163 -1 N ASN B 160 O GLY B 247 SHEET 4 AA5 6 ASP B 166 GLU B 177 -1 O PHE B 169 N PHE B 161 SHEET 5 AA5 6 ARG B 180 GLN B 189 -1 O VAL B 182 N ARG B 174 SHEET 6 AA5 6 GLU B 197 GLN B 199 -1 O GLU B 197 N CYS B 185 SHEET 1 AA6 5 VAL B 228 ASN B 234 0 SHEET 2 AA6 5 HIS B 220 VAL B 225 -1 N VAL B 223 O LEU B 231 SHEET 3 AA6 5 PRO B 209 VAL B 216 -1 N GLN B 213 O ALA B 224 SHEET 4 AA6 5 MET B 142 VAL B 150 -1 N ILE B 146 O ILE B 212 SHEET 5 AA6 5 ILE B 252 MET B 261 -1 O ALA B 260 N LEU B 143 SHEET 1 AA7 6 TYR D 130 PRO D 133 0 SHEET 2 AA7 6 GLN D 245 GLY D 250 -1 O LEU D 246 N MET D 132 SHEET 3 AA7 6 ILE D 157 LYS D 163 -1 N LYS D 162 O GLN D 245 SHEET 4 AA7 6 ASP D 166 GLU D 177 -1 O PHE D 169 N PHE D 161 SHEET 5 AA7 6 ARG D 180 GLN D 189 -1 O VAL D 182 N ARG D 174 SHEET 6 AA7 6 ASN D 192 TRP D 193 -1 O ASN D 192 N GLN D 189 SHEET 1 AA8 6 TYR D 130 PRO D 133 0 SHEET 2 AA8 6 GLN D 245 GLY D 250 -1 O LEU D 246 N MET D 132 SHEET 3 AA8 6 ILE D 157 LYS D 163 -1 N LYS D 162 O GLN D 245 SHEET 4 AA8 6 ASP D 166 GLU D 177 -1 O PHE D 169 N PHE D 161 SHEET 5 AA8 6 ARG D 180 GLN D 189 -1 O VAL D 182 N ARG D 174 SHEET 6 AA8 6 GLU D 197 GLN D 199 -1 O GLU D 197 N CYS D 185 SHEET 1 AA9 5 VAL D 228 ASN D 234 0 SHEET 2 AA9 5 HIS D 220 VAL D 225 -1 N VAL D 223 O LEU D 231 SHEET 3 AA9 5 PRO D 209 VAL D 216 -1 N GLN D 213 O ALA D 224 SHEET 4 AA9 5 MET D 142 VAL D 150 -1 N ILE D 146 O ILE D 212 SHEET 5 AA9 5 ILE D 252 MET D 261 -1 O ALA D 260 N LEU D 143 SHEET 1 AB1 6 TYR E 130 PRO E 133 0 SHEET 2 AB1 6 GLN E 245 GLY E 250 -1 O LEU E 246 N MET E 132 SHEET 3 AB1 6 ILE E 157 LYS E 163 -1 N THR E 158 O ILE E 249 SHEET 4 AB1 6 ASP E 166 GLU E 177 -1 O PHE E 169 N PHE E 161 SHEET 5 AB1 6 ARG E 180 GLN E 189 -1 O VAL E 182 N ARG E 174 SHEET 6 AB1 6 ASN E 192 TRP E 193 -1 O ASN E 192 N GLN E 189 SHEET 1 AB2 6 TYR E 130 PRO E 133 0 SHEET 2 AB2 6 GLN E 245 GLY E 250 -1 O LEU E 246 N MET E 132 SHEET 3 AB2 6 ILE E 157 LYS E 163 -1 N THR E 158 O ILE E 249 SHEET 4 AB2 6 ASP E 166 GLU E 177 -1 O PHE E 169 N PHE E 161 SHEET 5 AB2 6 ARG E 180 GLN E 189 -1 O VAL E 182 N ARG E 174 SHEET 6 AB2 6 GLU E 197 GLN E 199 -1 O GLN E 199 N ILE E 183 SHEET 1 AB3 5 VAL E 228 ASN E 234 0 SHEET 2 AB3 5 HIS E 220 VAL E 225 -1 N VAL E 223 O LEU E 231 SHEET 3 AB3 5 PRO E 209 VAL E 216 -1 N GLN E 213 O ALA E 224 SHEET 4 AB3 5 MET E 142 VAL E 150 -1 N ILE E 146 O ILE E 212 SHEET 5 AB3 5 ILE E 252 MET E 261 -1 O ALA E 260 N LEU E 143 CISPEP 1 VAL A 128 PRO A 129 0 4.33 CISPEP 2 VAL B 128 PRO B 129 0 3.56 CISPEP 3 VAL D 128 PRO D 129 0 -2.48 CISPEP 4 VAL E 128 PRO E 129 0 2.07 SITE 1 AC1 3 ASN A 160 LYS A 162 ILE A 249 SITE 1 AC2 12 HIS A 170 ASN A 172 ARG A 174 GLU A 177 SITE 2 AC2 12 ASN A 178 ASN A 186 TRP A 193 GLU A 196 SITE 3 AC2 12 ARG A 198 HOH A 404 HOH A 427 HOH A 446 SITE 1 AC3 2 ASN B 160 LYS B 162 SITE 1 AC4 17 HIS B 170 ASN B 172 ARG B 174 GLU B 177 SITE 2 AC4 17 ASN B 178 ASN B 186 GLU B 196 ARG B 198 SITE 3 AC4 17 HOH B 402 HOH B 406 HOH B 412 HOH B 431 SITE 4 AC4 17 ARG E 174 GLU E 177 ASN E 178 TD2 E 302 SITE 5 AC4 17 HOH E 422 SITE 1 AC5 2 ASN D 160 LYS D 162 SITE 1 AC6 2 ARG A 180 PRO D 129 SITE 1 AC7 12 HIS D 170 ASN D 172 ARG D 174 GLU D 177 SITE 2 AC7 12 ASN D 178 ASN D 186 GLU D 196 ARG D 198 SITE 3 AC7 12 HOH D 410 HOH D 411 HOH D 425 HOH D 446 SITE 1 AC8 3 ASN E 160 LYS E 162 GLY E 247 SITE 1 AC9 18 GLU B 177 ASN B 178 TD2 B 302 HIS E 170 SITE 2 AC9 18 ASN E 172 ARG E 174 GLU E 177 ASN E 178 SITE 3 AC9 18 ARG E 180 ASN E 186 TRP E 193 GLU E 196 SITE 4 AC9 18 ARG E 198 HOH E 407 HOH E 412 HOH E 422 SITE 5 AC9 18 HOH E 430 HOH E 431 CRYST1 67.241 58.712 70.773 90.00 113.85 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014872 0.000000 0.006575 0.00000 SCALE2 0.000000 0.017032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015449 0.00000