HEADER HYDROLASE 03-SEP-20 7CY9 TITLE CRYSTAL STRUCTURE OF A BIODEGRADABLE PLASTIC-DEGRADING CUTINASE FROM TITLE 2 PARAPHOMA SP. B47-9 SOLVED BY GETTING THE PHASE FROM ANOMALOUS TITLE 3 SCATTERING OF UNCOVALENTLY COORDINATED ARSENIC (CACODYLATE). COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUTINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.74 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAPHOMA SP. B47-9; SOURCE 3 ORGANISM_TAXID: 1804209 KEYWDS SERINE HYDROLASE, CUTINASE, BIODEGRADABLE PLASTIC-DEGRADING ENZYME, KEYWDS 2 CACODYLATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SUZUKI,M.KOITABASHI REVDAT 2 16-DEC-20 7CY9 1 AUTHOR JRNL REMARK SHEET REVDAT 2 2 1 SSBOND LINK ATOM REVDAT 1 30-SEP-20 7CY9 0 JRNL AUTH K.SUZUKI,M.KOITABASHI JRNL TITL CRYSTAL STRUCTURE OF A BIODEGRADABLE PLASTIC-DEGRADING JRNL TITL 2 CUTINASE FROM PARAPHOMA SP. B47-9 SOLVED BY GETTING THE JRNL TITL 3 PHASE FROM ANOMALOUS SCATTERING OF UNCOVALENTLY COORDINATED JRNL TITL 4 ARSENIC (CACODYLATE). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 52937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1580 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.60000 REMARK 3 B13 (A**2) : 1.00000 REMARK 3 B23 (A**2) : 0.38000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.024 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2838 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2707 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3860 ; 2.059 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6204 ; 1.673 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 6.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;35.580 ;21.970 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;11.498 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.063 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3348 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 644 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5545 ; 7.271 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.6.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55832 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 36.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE, 1MM CALCIUM CHLORIDE, 30% W/V POLYETHYLENE GLYCOL REMARK 280 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PCA B 1 REMARK 465 VAL B 2 REMARK 465 ASN B 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 347 O HOH B 428 2.10 REMARK 500 O HOH B 329 O HOH B 462 2.14 REMARK 500 O2 CAD B 201 O HOH B 301 2.17 REMARK 500 OG SER B 106 O2 CAD B 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 354 O HOH A 455 1655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 195 C ASN A 195 O 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 105 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 156 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASN A 195 CA - C - O ANGL. DEV. = -19.7 DEGREES REMARK 500 ARG B 142 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 48.04 -144.58 REMARK 500 THR A 29 -6.06 72.25 REMARK 500 SER A 106 -125.91 66.85 REMARK 500 ASN A 183 -83.66 -131.14 REMARK 500 ASN B 16 51.85 -141.01 REMARK 500 THR B 29 -0.39 69.93 REMARK 500 SER B 106 -126.81 71.51 REMARK 500 ASN B 183 -85.35 -131.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 490 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 GLU A 46 OE2 95.9 REMARK 620 3 ALA A 51 O 164.6 96.7 REMARK 620 4 VAL A 54 O 86.2 104.8 82.0 REMARK 620 5 HOH A 399 O 100.1 86.1 89.6 166.8 REMARK 620 6 HOH A 452 O 88.2 163.4 82.2 91.5 77.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 176 O REMARK 620 2 ASP A 179 OD1 71.4 REMARK 620 3 ASP A 179 OD2 121.9 50.5 REMARK 620 4 GLU A 180 OE1 89.9 84.2 84.2 REMARK 620 5 GLU A 180 OE2 134.2 115.7 79.1 49.3 REMARK 620 6 HOH A 325 O 85.2 156.2 152.8 100.2 83.5 REMARK 620 7 HOH A 332 O 158.6 115.7 68.6 110.5 63.1 84.9 REMARK 620 8 HOH A 431 O 78.4 75.4 87.1 158.8 146.9 96.4 84.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE1 REMARK 620 2 GLU B 8 OE2 50.3 REMARK 620 3 GLU B 46 OE2 89.8 97.1 REMARK 620 4 ALA B 51 O 162.4 139.6 101.4 REMARK 620 5 VAL B 54 O 84.0 127.9 107.4 79.6 REMARK 620 6 HOH B 343 O 114.5 65.1 88.7 79.7 155.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 176 O REMARK 620 2 ASP B 179 OD1 69.9 REMARK 620 3 ASP B 179 OD2 124.8 55.2 REMARK 620 4 GLU B 180 OE2 99.9 93.6 89.8 REMARK 620 5 HOH B 349 O 80.8 147.3 153.3 77.0 REMARK 620 6 HOH B 432 O 145.7 130.5 79.0 104.9 82.2 REMARK 620 7 HOH B 435 O 80.9 100.5 102.0 165.2 88.6 69.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7CY3 RELATED DB: PDB REMARK 900 7CY3 WAS SOLVED BY THE MOLECULAR REPLACEMENT MEHTOD FROM THE SAME REMARK 900 CRYSTAL. DBREF1 7CY9 A 1 195 UNP A0A060N399_9PLEO DBREF2 7CY9 A A0A060N399 33 227 DBREF1 7CY9 B 1 195 UNP A0A060N399_9PLEO DBREF2 7CY9 B A0A060N399 33 227 SEQRES 1 A 195 PCA VAL GLY SER SER LYS ASN GLU LEU GLU THR GLY SER SEQRES 2 A 195 ALA SER ASN CYS PRO LYS ALA ILE LEU ILE PHE ALA ARG SEQRES 3 A 195 GLY SER THR GLU THR GLY ASN LEU GLY THR LEU GLY ALA SEQRES 4 A 195 PRO LEU GLY ASP ALA LEU GLU SER ARG TYR GLY ALA SER SEQRES 5 A 195 ASN VAL TRP VAL GLN GLY VAL GLY GLY PRO TYR ASP ALA SEQRES 6 A 195 ALA LEU GLY ASP ASN ALA LEU PRO ARG GLY SER SER ALA SEQRES 7 A 195 ALA ALA ILE ARG GLU GLY VAL ARG LEU LEU ASN LEU ALA SEQRES 8 A 195 ASN SER LYS CYS PRO ASN SER LYS VAL VAL ALA GLY GLY SEQRES 9 A 195 TYR SER GLN GLY ALA ALA LEU ALA ALA ALA ALA ILE SER SEQRES 10 A 195 ASP ALA SER THR THR VAL ARG ASN GLN ILE VAL GLY THR SEQRES 11 A 195 VAL LEU PHE GLY TYR THR LYS ASN GLN GLN ASN ARG GLY SEQRES 12 A 195 GLY ILE PRO GLY TYR PRO GLN ASP ARG LEU ARG VAL TYR SEQRES 13 A 195 CYS ALA VAL GLY ASP LEU VAL CYS GLU GLY THR LEU ILE SEQRES 14 A 195 VAL LEU ALA PRO HIS LEU SER TYR GLY ASP GLU ALA ARG SEQRES 15 A 195 ASN GLU ALA PRO ALA PHE LEU ILE SER LYS ILE GLY ASN SEQRES 1 B 195 PCA VAL GLY SER SER LYS ASN GLU LEU GLU THR GLY SER SEQRES 2 B 195 ALA SER ASN CYS PRO LYS ALA ILE LEU ILE PHE ALA ARG SEQRES 3 B 195 GLY SER THR GLU THR GLY ASN LEU GLY THR LEU GLY ALA SEQRES 4 B 195 PRO LEU GLY ASP ALA LEU GLU SER ARG TYR GLY ALA SER SEQRES 5 B 195 ASN VAL TRP VAL GLN GLY VAL GLY GLY PRO TYR ASP ALA SEQRES 6 B 195 ALA LEU GLY ASP ASN ALA LEU PRO ARG GLY SER SER ALA SEQRES 7 B 195 ALA ALA ILE ARG GLU GLY VAL ARG LEU LEU ASN LEU ALA SEQRES 8 B 195 ASN SER LYS CYS PRO ASN SER LYS VAL VAL ALA GLY GLY SEQRES 9 B 195 TYR SER GLN GLY ALA ALA LEU ALA ALA ALA ALA ILE SER SEQRES 10 B 195 ASP ALA SER THR THR VAL ARG ASN GLN ILE VAL GLY THR SEQRES 11 B 195 VAL LEU PHE GLY TYR THR LYS ASN GLN GLN ASN ARG GLY SEQRES 12 B 195 GLY ILE PRO GLY TYR PRO GLN ASP ARG LEU ARG VAL TYR SEQRES 13 B 195 CYS ALA VAL GLY ASP LEU VAL CYS GLU GLY THR LEU ILE SEQRES 14 B 195 VAL LEU ALA PRO HIS LEU SER TYR GLY ASP GLU ALA ARG SEQRES 15 B 195 ASN GLU ALA PRO ALA PHE LEU ILE SER LYS ILE GLY ASN MODRES 7CY9 PCA A 1 GLN MODIFIED RESIDUE HET PCA A 1 8 HET CAD A 201 5 HET CAD A 202 5 HET NA A 203 1 HET NA A 204 1 HET CAD B 201 5 HET NA B 202 1 HET NA B 203 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM CAD CACODYLIC ACID HETNAM NA SODIUM ION HETSYN CAD HYDROXYDIMETHYLARSINE OXIDE FORMUL 1 PCA C5 H7 N O3 FORMUL 3 CAD 3(C2 H7 AS O2) FORMUL 5 NA 4(NA 1+) FORMUL 10 HOH *360(H2 O) HELIX 1 AA1 ASN A 7 GLY A 12 1 6 HELIX 2 AA2 LEU A 34 GLY A 50 1 17 HELIX 3 AA3 ALA A 66 SER A 76 5 11 HELIX 4 AA4 SER A 77 CYS A 95 1 19 HELIX 5 AA5 SER A 106 ALA A 119 1 14 HELIX 6 AA6 SER A 120 GLN A 126 1 7 HELIX 7 AA7 PRO A 149 ASP A 151 5 3 HELIX 8 AA8 ASP A 161 GLY A 166 5 6 HELIX 9 AA9 LEU A 171 SER A 176 5 6 HELIX 10 AB1 TYR A 177 ASN A 183 1 7 HELIX 11 AB2 ASN A 183 GLY A 194 1 12 HELIX 12 AB3 ASN B 7 GLY B 12 1 6 HELIX 13 AB4 LEU B 34 GLY B 50 1 17 HELIX 14 AB5 ALA B 66 LEU B 72 5 7 HELIX 15 AB6 SER B 77 CYS B 95 1 19 HELIX 16 AB7 SER B 106 ALA B 119 1 14 HELIX 17 AB8 SER B 120 GLN B 126 1 7 HELIX 18 AB9 PRO B 149 ASP B 151 5 3 HELIX 19 AC1 ASP B 161 GLY B 166 5 6 HELIX 20 AC2 LEU B 171 SER B 176 5 6 HELIX 21 AC3 TYR B 177 ASN B 183 1 7 HELIX 22 AC4 ASN B 183 GLY B 194 1 12 SHEET 1 AA1 5 VAL A 54 GLY A 58 0 SHEET 2 AA1 5 ALA A 20 ALA A 25 1 N LEU A 22 O TRP A 55 SHEET 3 AA1 5 LYS A 99 TYR A 105 1 O VAL A 101 N ILE A 21 SHEET 4 AA1 5 ILE A 127 PHE A 133 1 O PHE A 133 N GLY A 104 SHEET 5 AA1 5 LEU A 153 TYR A 156 1 O TYR A 156 N LEU A 132 SHEET 1 AA2 5 VAL B 54 GLY B 58 0 SHEET 2 AA2 5 ALA B 20 ALA B 25 1 N LEU B 22 O GLN B 57 SHEET 3 AA2 5 LYS B 99 TYR B 105 1 O VAL B 101 N ILE B 21 SHEET 4 AA2 5 ILE B 127 PHE B 133 1 O PHE B 133 N GLY B 104 SHEET 5 AA2 5 LEU B 153 TYR B 156 1 O TYR B 156 N LEU B 132 SSBOND 1 CYS A 17 CYS A 95 1555 1555 2.07 SSBOND 2 CYS A 157 CYS A 164 1555 1555 2.00 SSBOND 3 CYS B 17 CYS B 95 1555 1555 2.08 SSBOND 4 CYS B 157 CYS B 164 1555 1555 2.03 LINK C PCA A 1 N VAL A 2 1555 1555 1.34 LINK OE1 GLU A 8 NA NA A 204 1555 1555 2.51 LINK OE2 GLU A 46 NA NA A 204 1555 1555 2.35 LINK O ALA A 51 NA NA A 204 1555 1555 2.41 LINK O VAL A 54 NA NA A 204 1555 1555 2.33 LINK O SER A 176 NA NA A 203 1555 1555 2.45 LINK OD1 ASP A 179 NA NA A 203 1555 1555 2.38 LINK OD2 ASP A 179 NA NA A 203 1555 1555 2.80 LINK OE1 GLU A 180 NA NA A 203 1555 1555 2.43 LINK OE2 GLU A 180 NA NA A 203 1555 1555 2.76 LINK NA NA A 203 O HOH A 325 1555 1555 2.41 LINK NA NA A 203 O HOH A 332 1555 1555 2.37 LINK NA NA A 203 O HOH A 431 1555 1555 2.47 LINK NA NA A 204 O HOH A 399 1555 1555 2.37 LINK NA NA A 204 O HOH A 452 1555 1555 2.48 LINK OE1 GLU B 8 NA NA B 203 1555 1555 2.41 LINK OE2 GLU B 8 NA NA B 203 1555 1555 2.62 LINK OE2 GLU B 46 NA NA B 203 1555 1555 2.34 LINK O ALA B 51 NA NA B 203 1555 1555 2.33 LINK O VAL B 54 NA NA B 203 1555 1555 2.35 LINK O SER B 176 NA NA B 202 1555 1555 2.50 LINK OD1 ASP B 179 NA NA B 202 1555 1555 2.19 LINK OD2 ASP B 179 NA NA B 202 1555 1555 2.57 LINK OE2 GLU B 180 NA NA B 202 1555 1555 2.50 LINK NA NA B 202 O HOH B 349 1555 1555 2.46 LINK NA NA B 202 O HOH B 432 1555 1555 2.38 LINK NA NA B 202 O HOH B 435 1555 1555 2.43 LINK NA NA B 203 O HOH B 343 1555 1555 2.46 CRYST1 34.886 43.517 51.724 103.78 92.42 101.49 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028665 0.005825 0.002765 0.00000 SCALE2 0.000000 0.023449 0.006101 0.00000 SCALE3 0.000000 0.000000 0.019995 0.00000 HETATM 1 N PCA A 1 21.447 54.448 72.391 1.00 16.02 N ANISOU 1 N PCA A 1 1663 1757 2664 -192 -962 -569 N HETATM 2 CA PCA A 1 21.952 53.174 71.893 1.00 16.50 C ANISOU 2 CA PCA A 1 1798 1920 2549 -281 -847 -378 C HETATM 3 CB PCA A 1 21.263 53.104 70.506 1.00 17.66 C ANISOU 3 CB PCA A 1 2649 2211 1846 355 -436 -443 C HETATM 4 CG PCA A 1 20.018 53.975 70.668 1.00 17.73 C ANISOU 4 CG PCA A 1 2228 1676 2830 88 -431 202 C HETATM 5 CD PCA A 1 20.240 54.794 71.919 1.00 16.37 C ANISOU 5 CD PCA A 1 1527 1567 3125 -678 -952 247 C HETATM 6 OE PCA A 1 19.447 55.654 72.419 1.00 14.94 O ANISOU 6 OE PCA A 1 1948 808 2918 -698 -1400 24 O HETATM 7 C PCA A 1 23.481 53.087 71.797 1.00 20.08 C ANISOU 7 C PCA A 1 1672 1854 4101 -507 -1352 -37 C HETATM 8 O PCA A 1 24.168 54.050 71.391 1.00 21.35 O ANISOU 8 O PCA A 1 2451 1850 3810 -185 -812 538 O