HEADER CELL ADHESION 03-SEP-20 7CYM TITLE CRYSTAL STRUCTURE OF LI-CADHERIN EC1-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-17; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LI-CADHERIN EC1-4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDH17; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS LI-CADHERIN, DIMERIZATION, MD SIMULATIONS, SAXS, CELL-ADHESION, KEYWDS 2 ANALYTICAL ULTRACENTRIFUGATION, PROTEIN CHEMISTRY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,A.YUI,K.TSUMOTO REVDAT 3 29-NOV-23 7CYM 1 REMARK REVDAT 2 05-JAN-22 7CYM 1 JRNL REVDAT 1 18-AUG-21 7CYM 0 JRNL AUTH A.YUI,J.M.M.CAAVEIRO,D.KURODA,M.NAKAKIDO,S.NAGATOISHI, JRNL AUTH 2 S.GODA,T.MARUNO,S.UCHIYAMA,K.TSUMOTO JRNL TITL MECHANISM OF DIMERIZATION AND STRUCTURAL FEATURES OF HUMAN JRNL TITL 2 LI-CADHERIN. JRNL REF J.BIOL.CHEM. V. 297 01054 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34364873 JRNL DOI 10.1016/J.JBC.2021.101054 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2040 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6657 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 182 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 3.01000 REMARK 3 B33 (A**2) : -3.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.468 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.316 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.311 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.033 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7003 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 6202 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9552 ; 1.835 ; 1.703 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14656 ; 0.919 ; 1.661 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 835 ; 8.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 364 ;38.242 ;24.588 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1165 ;20.317 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 973 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7701 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1182 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 419 B 4 419 12410 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 442 REMARK 3 RESIDUE RANGE : A 501 A 502 REMARK 3 RESIDUE RANGE : C 1 C 4 REMARK 3 RESIDUE RANGE : D 1 D 2 REMARK 3 ORIGIN FOR THE GROUP (A): -22.163 3.762 16.897 REMARK 3 T TENSOR REMARK 3 T11: 0.3791 T22: 0.5266 REMARK 3 T33: 0.0807 T12: 0.0537 REMARK 3 T13: -0.0747 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.1263 L22: 0.4159 REMARK 3 L33: 1.6978 L12: 0.0197 REMARK 3 L13: 1.3313 L23: -0.0219 REMARK 3 S TENSOR REMARK 3 S11: -0.1970 S12: -0.1843 S13: 0.0992 REMARK 3 S21: 0.1497 S22: 0.0534 S23: 0.1172 REMARK 3 S31: -0.3922 S32: -0.2335 S33: 0.1436 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 443 REMARK 3 RESIDUE RANGE : B 501 B 501 REMARK 3 RESIDUE RANGE : E 1 E 4 REMARK 3 ORIGIN FOR THE GROUP (A): 0.913 -23.996 30.454 REMARK 3 T TENSOR REMARK 3 T11: 0.3951 T22: 0.4669 REMARK 3 T33: 0.0891 T12: 0.0079 REMARK 3 T13: -0.1745 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.5190 L22: 0.0610 REMARK 3 L33: 1.9348 L12: -0.1343 REMARK 3 L13: 0.9455 L23: -0.2405 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: -0.0152 S13: -0.0916 REMARK 3 S21: 0.0732 S22: 0.0394 S23: -0.0137 REMARK 3 S31: 0.0598 S32: -0.0328 S33: -0.1107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7CYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 59.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.85800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 4ZMY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM SULFATE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.42000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 23 REMARK 465 GLU A 24 REMARK 465 GLY A 25 REMARK 465 GLN A 443 REMARK 465 LYS A 444 REMARK 465 LEU A 445 REMARK 465 ILE A 446 REMARK 465 SER A 447 REMARK 465 GLU A 448 REMARK 465 GLU A 449 REMARK 465 ASP A 450 REMARK 465 LEU A 451 REMARK 465 ASN A 452 REMARK 465 SER A 453 REMARK 465 ALA A 454 REMARK 465 VAL A 455 REMARK 465 ASP A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 GLN B 23 REMARK 465 GLU B 24 REMARK 465 GLY B 25 REMARK 465 LYS B 444 REMARK 465 LEU B 445 REMARK 465 ILE B 446 REMARK 465 SER B 447 REMARK 465 GLU B 448 REMARK 465 GLU B 449 REMARK 465 ASP B 450 REMARK 465 LEU B 451 REMARK 465 ASN B 452 REMARK 465 SER B 453 REMARK 465 ALA B 454 REMARK 465 VAL B 455 REMARK 465 ASP B 456 REMARK 465 HIS B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 419 NE2 GLN A 436 2.16 REMARK 500 O SER A 139 OG SER A 196 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 73 CD GLU A 73 OE1 0.079 REMARK 500 GLU A 301 CG GLU A 301 CD 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 414 CB - CA - C ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 44 -7.70 -39.25 REMARK 500 GLN A 46 152.78 157.62 REMARK 500 PHE A 49 147.43 -170.76 REMARK 500 VAL A 58 -37.38 -133.79 REMARK 500 ILE A 69 -52.14 -120.27 REMARK 500 ASP A 154 -176.95 -68.35 REMARK 500 GLN A 166 143.03 -174.36 REMARK 500 ASN A 204 89.44 -173.44 REMARK 500 LYS A 278 77.72 -105.12 REMARK 500 PRO A 319 136.90 -34.98 REMARK 500 SER A 321 -167.91 -167.61 REMARK 500 SER A 342 159.32 179.20 REMARK 500 LEU A 355 113.23 -29.78 REMARK 500 ASP A 368 -172.74 -65.51 REMARK 500 GLU A 370 156.30 -47.78 REMARK 500 ASN A 371 19.57 55.05 REMARK 500 LYS A 387 35.49 -84.79 REMARK 500 LYS A 407 -55.12 -128.68 REMARK 500 GLN A 417 135.66 -170.44 REMARK 500 ASP A 426 -159.49 -101.29 REMARK 500 PHE B 27 -11.46 71.80 REMARK 500 VAL B 58 -40.58 -133.22 REMARK 500 ILE B 69 -51.31 -123.21 REMARK 500 ARG B 82 163.06 169.85 REMARK 500 ARG B 140 118.94 -35.27 REMARK 500 ASP B 154 -177.31 -67.26 REMARK 500 GLN B 166 142.90 -172.22 REMARK 500 ASN B 204 89.23 -169.55 REMARK 500 THR B 260 -173.93 -170.09 REMARK 500 PRO B 283 34.23 -91.56 REMARK 500 GLU B 315 8.03 -68.78 REMARK 500 PRO B 319 97.93 -43.67 REMARK 500 SER B 321 -160.64 -163.20 REMARK 500 SER B 342 157.90 177.52 REMARK 500 LEU B 355 126.88 -35.12 REMARK 500 ASP B 368 -172.62 -67.55 REMARK 500 GLU B 370 151.14 -39.84 REMARK 500 VAL B 382 -62.40 -90.45 REMARK 500 LYS B 387 41.26 -88.71 REMARK 500 LYS B 407 -52.29 -128.43 REMARK 500 ASP B 426 -160.51 -103.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 45 GLN A 46 123.77 REMARK 500 GLU A 75 GLY A 76 147.78 REMARK 500 PRO B 205 SER B 206 -149.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 74 0.08 SIDE CHAIN REMARK 500 ARG A 82 0.21 SIDE CHAIN REMARK 500 ARG A 86 0.16 SIDE CHAIN REMARK 500 ARG A 123 0.20 SIDE CHAIN REMARK 500 ARG A 136 0.09 SIDE CHAIN REMARK 500 ARG B 74 0.17 SIDE CHAIN REMARK 500 ARG B 82 0.15 SIDE CHAIN REMARK 500 ARG B 86 0.13 SIDE CHAIN REMARK 500 ARG B 136 0.13 SIDE CHAIN REMARK 500 ARG B 140 0.12 SIDE CHAIN REMARK 500 ARG B 193 0.13 SIDE CHAIN REMARK 500 ARG B 281 0.10 SIDE CHAIN REMARK 500 ARG B 367 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 40 OE2 REMARK 620 2 GLU A 87 OE1 81.1 REMARK 620 3 GLU A 87 OE2 115.9 48.2 REMARK 620 4 ASP A 118 OD1 89.3 110.3 78.0 REMARK 620 5 ILE A 119 O 74.2 146.7 165.0 91.6 REMARK 620 6 ASP A 121 OD1 84.6 72.5 108.1 172.8 83.2 REMARK 620 7 ASP A 154 OD1 156.4 100.8 80.6 111.5 93.5 73.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 40 OE1 REMARK 620 2 ASP A 85 OD1 78.7 REMARK 620 3 GLU A 87 OE1 70.9 76.1 REMARK 620 4 ASP A 121 OD1 86.6 146.5 70.6 REMARK 620 5 ASP A 121 OD2 78.5 153.1 109.3 45.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 120 OD1 REMARK 620 2 ASN A 122 O 96.6 REMARK 620 3 ASP A 152 OD1 155.2 82.2 REMARK 620 4 ASP A 152 OD2 149.5 98.5 53.9 REMARK 620 5 ASP A 154 OD2 81.3 83.5 122.8 74.3 REMARK 620 6 ASN A 160 O 81.4 174.1 102.0 80.8 90.6 REMARK 620 7 ASP A 215 OD2 65.9 89.6 89.3 140.2 145.5 94.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 249 OE1 REMARK 620 2 ASP A 299 OD1 88.8 REMARK 620 3 GLU A 301 OE1 73.7 77.8 REMARK 620 4 ASP A 335 OD2 80.7 140.6 62.8 REMARK 620 5 NAG C 1 O7 103.9 85.9 163.5 133.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 249 OE2 REMARK 620 2 GLU A 301 OE1 82.8 REMARK 620 3 GLU A 301 OE2 105.2 53.3 REMARK 620 4 ASP A 332 OD1 78.6 120.8 78.6 REMARK 620 5 ILE A 333 O 68.1 140.2 159.0 80.5 REMARK 620 6 ASP A 335 OD2 72.8 72.2 124.8 146.8 73.5 REMARK 620 7 ASP A 368 OD1 160.8 94.0 87.6 118.7 104.5 88.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 334 OD1 REMARK 620 2 ASN A 336 O 95.0 REMARK 620 3 ASP A 366 OD1 149.1 103.9 REMARK 620 4 ASP A 366 OD2 151.6 88.1 54.8 REMARK 620 5 ASP A 368 OD2 65.0 80.9 141.6 87.8 REMARK 620 6 ASN A 374 O 86.0 174.0 77.7 88.2 94.2 REMARK 620 7 ASP A 426 OD2 74.3 97.1 79.1 133.4 138.8 88.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 40 OE2 REMARK 620 2 GLU B 87 OE1 83.7 REMARK 620 3 GLU B 87 OE2 114.8 47.9 REMARK 620 4 ASP B 118 OD1 88.5 108.7 73.9 REMARK 620 5 ILE B 119 O 76.7 152.5 159.5 90.2 REMARK 620 6 ASP B 121 OD1 90.5 75.0 109.9 176.1 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 40 OE1 REMARK 620 2 ASP B 85 OD1 81.8 REMARK 620 3 GLU B 87 OE1 68.7 74.8 REMARK 620 4 ASP B 121 OD2 78.8 160.5 100.3 REMARK 620 5 HOH B 621 O 156.4 93.2 87.7 105.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 120 OD1 REMARK 620 2 ASN B 122 O 95.1 REMARK 620 3 ASP B 152 OD1 152.3 79.8 REMARK 620 4 ASP B 152 OD2 153.3 100.7 53.1 REMARK 620 5 ASP B 154 OD2 69.7 93.5 137.3 87.8 REMARK 620 6 ASN B 160 O 81.3 176.1 104.1 82.1 83.9 REMARK 620 7 ASP B 215 OD2 63.8 88.1 88.8 137.6 133.4 91.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 249 OE2 REMARK 620 2 GLU B 301 OE1 93.4 REMARK 620 3 GLU B 301 OE2 118.9 54.4 REMARK 620 4 ASP B 332 OD1 83.5 125.9 80.3 REMARK 620 5 ILE B 333 O 70.5 150.8 154.8 77.6 REMARK 620 6 ASP B 335 OD2 76.9 79.6 130.4 148.9 73.2 REMARK 620 7 ASP B 368 OD1 158.9 89.9 79.6 111.2 97.1 83.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 249 OE1 REMARK 620 2 ASP B 299 OD1 95.6 REMARK 620 3 GLU B 301 OE1 83.9 88.5 REMARK 620 4 ASP B 335 OD1 98.2 160.0 107.3 REMARK 620 5 ASP B 335 OD2 84.9 153.5 65.1 43.2 REMARK 620 6 HOH B 604 O 160.1 67.4 85.2 101.0 105.5 REMARK 620 7 NAG E 1 O7 100.1 89.9 175.8 73.5 116.2 90.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 334 OD1 REMARK 620 2 ASN B 336 O 95.7 REMARK 620 3 ASP B 366 OD1 149.5 103.9 REMARK 620 4 ASP B 366 OD2 151.4 86.7 54.6 REMARK 620 5 ASP B 368 OD2 64.3 80.5 141.5 88.1 REMARK 620 6 ASN B 374 O 85.0 174.7 77.7 90.1 95.1 REMARK 620 7 ASP B 426 OD2 74.2 96.4 80.5 134.0 137.7 88.9 REMARK 620 N 1 2 3 4 5 6 DBREF 7CYM A 23 441 UNP Q12864 CAD17_HUMAN 23 441 DBREF 7CYM B 23 441 UNP Q12864 CAD17_HUMAN 23 441 SEQADV 7CYM GLU A 442 UNP Q12864 EXPRESSION TAG SEQADV 7CYM GLN A 443 UNP Q12864 EXPRESSION TAG SEQADV 7CYM LYS A 444 UNP Q12864 EXPRESSION TAG SEQADV 7CYM LEU A 445 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ILE A 446 UNP Q12864 EXPRESSION TAG SEQADV 7CYM SER A 447 UNP Q12864 EXPRESSION TAG SEQADV 7CYM GLU A 448 UNP Q12864 EXPRESSION TAG SEQADV 7CYM GLU A 449 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ASP A 450 UNP Q12864 EXPRESSION TAG SEQADV 7CYM LEU A 451 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ASN A 452 UNP Q12864 EXPRESSION TAG SEQADV 7CYM SER A 453 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ALA A 454 UNP Q12864 EXPRESSION TAG SEQADV 7CYM VAL A 455 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ASP A 456 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS A 457 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS A 458 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS A 459 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS A 460 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS A 461 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS A 462 UNP Q12864 EXPRESSION TAG SEQADV 7CYM GLU B 442 UNP Q12864 EXPRESSION TAG SEQADV 7CYM GLN B 443 UNP Q12864 EXPRESSION TAG SEQADV 7CYM LYS B 444 UNP Q12864 EXPRESSION TAG SEQADV 7CYM LEU B 445 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ILE B 446 UNP Q12864 EXPRESSION TAG SEQADV 7CYM SER B 447 UNP Q12864 EXPRESSION TAG SEQADV 7CYM GLU B 448 UNP Q12864 EXPRESSION TAG SEQADV 7CYM GLU B 449 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ASP B 450 UNP Q12864 EXPRESSION TAG SEQADV 7CYM LEU B 451 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ASN B 452 UNP Q12864 EXPRESSION TAG SEQADV 7CYM SER B 453 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ALA B 454 UNP Q12864 EXPRESSION TAG SEQADV 7CYM VAL B 455 UNP Q12864 EXPRESSION TAG SEQADV 7CYM ASP B 456 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS B 457 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS B 458 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS B 459 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS B 460 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS B 461 UNP Q12864 EXPRESSION TAG SEQADV 7CYM HIS B 462 UNP Q12864 EXPRESSION TAG SEQRES 1 A 440 GLN GLU GLY LYS PHE SER GLY PRO LEU LYS PRO MET THR SEQRES 2 A 440 PHE SER ILE TYR GLU GLY GLN GLU PRO SER GLN ILE ILE SEQRES 3 A 440 PHE GLN PHE LYS ALA ASN PRO PRO ALA VAL THR PHE GLU SEQRES 4 A 440 LEU THR GLY GLU THR ASP ASN ILE PHE VAL ILE GLU ARG SEQRES 5 A 440 GLU GLY LEU LEU TYR TYR ASN ARG ALA LEU ASP ARG GLU SEQRES 6 A 440 THR ARG SER THR HIS ASN LEU GLN VAL ALA ALA LEU ASP SEQRES 7 A 440 ALA ASN GLY ILE ILE VAL GLU GLY PRO VAL PRO ILE THR SEQRES 8 A 440 ILE LYS VAL LYS ASP ILE ASN ASP ASN ARG PRO THR PHE SEQRES 9 A 440 LEU GLN SER LYS TYR GLU GLY SER VAL ARG GLN ASN SER SEQRES 10 A 440 ARG PRO GLY LYS PRO PHE LEU TYR VAL ASN ALA THR ASP SEQRES 11 A 440 LEU ASP ASP PRO ALA THR PRO ASN GLY GLN LEU TYR TYR SEQRES 12 A 440 GLN ILE VAL ILE GLN LEU PRO MET ILE ASN ASN VAL MET SEQRES 13 A 440 TYR PHE GLN ILE ASN ASN LYS THR GLY ALA ILE SER LEU SEQRES 14 A 440 THR ARG GLU GLY SER GLN GLU LEU ASN PRO ALA LYS ASN SEQRES 15 A 440 PRO SER TYR ASN LEU VAL ILE SER VAL LYS ASP MET GLY SEQRES 16 A 440 GLY GLN SER GLU ASN SER PHE SER ASP THR THR SER VAL SEQRES 17 A 440 ASP ILE ILE VAL THR GLU ASN ILE TRP LYS ALA PRO LYS SEQRES 18 A 440 PRO VAL GLU MET VAL GLU ASN SER THR ASP PRO HIS PRO SEQRES 19 A 440 ILE LYS ILE THR GLN VAL ARG TRP ASN ASP PRO GLY ALA SEQRES 20 A 440 GLN TYR SER LEU VAL ASP LYS GLU LYS LEU PRO ARG PHE SEQRES 21 A 440 PRO PHE SER ILE ASP GLN GLU GLY ASP ILE TYR VAL THR SEQRES 22 A 440 GLN PRO LEU ASP ARG GLU GLU LYS ASP ALA TYR VAL PHE SEQRES 23 A 440 TYR ALA VAL ALA LYS ASP GLU TYR GLY LYS PRO LEU SER SEQRES 24 A 440 TYR PRO LEU GLU ILE HIS VAL LYS VAL LYS ASP ILE ASN SEQRES 25 A 440 ASP ASN PRO PRO THR CYS PRO SER PRO VAL THR VAL PHE SEQRES 26 A 440 GLU VAL GLN GLU ASN GLU ARG LEU GLY ASN SER ILE GLY SEQRES 27 A 440 THR LEU THR ALA HIS ASP ARG ASP GLU GLU ASN THR ALA SEQRES 28 A 440 ASN SER PHE LEU ASN TYR ARG ILE VAL GLU GLN THR PRO SEQRES 29 A 440 LYS LEU PRO MET ASP GLY LEU PHE LEU ILE GLN THR TYR SEQRES 30 A 440 ALA GLY MET LEU GLN LEU ALA LYS GLN SER LEU LYS LYS SEQRES 31 A 440 GLN ASP THR PRO GLN TYR ASN LEU THR ILE GLU VAL SER SEQRES 32 A 440 ASP LYS ASP PHE LYS THR LEU CYS PHE VAL GLN ILE ASN SEQRES 33 A 440 VAL ILE ASP GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 34 A 440 ASN SER ALA VAL ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 440 GLN GLU GLY LYS PHE SER GLY PRO LEU LYS PRO MET THR SEQRES 2 B 440 PHE SER ILE TYR GLU GLY GLN GLU PRO SER GLN ILE ILE SEQRES 3 B 440 PHE GLN PHE LYS ALA ASN PRO PRO ALA VAL THR PHE GLU SEQRES 4 B 440 LEU THR GLY GLU THR ASP ASN ILE PHE VAL ILE GLU ARG SEQRES 5 B 440 GLU GLY LEU LEU TYR TYR ASN ARG ALA LEU ASP ARG GLU SEQRES 6 B 440 THR ARG SER THR HIS ASN LEU GLN VAL ALA ALA LEU ASP SEQRES 7 B 440 ALA ASN GLY ILE ILE VAL GLU GLY PRO VAL PRO ILE THR SEQRES 8 B 440 ILE LYS VAL LYS ASP ILE ASN ASP ASN ARG PRO THR PHE SEQRES 9 B 440 LEU GLN SER LYS TYR GLU GLY SER VAL ARG GLN ASN SER SEQRES 10 B 440 ARG PRO GLY LYS PRO PHE LEU TYR VAL ASN ALA THR ASP SEQRES 11 B 440 LEU ASP ASP PRO ALA THR PRO ASN GLY GLN LEU TYR TYR SEQRES 12 B 440 GLN ILE VAL ILE GLN LEU PRO MET ILE ASN ASN VAL MET SEQRES 13 B 440 TYR PHE GLN ILE ASN ASN LYS THR GLY ALA ILE SER LEU SEQRES 14 B 440 THR ARG GLU GLY SER GLN GLU LEU ASN PRO ALA LYS ASN SEQRES 15 B 440 PRO SER TYR ASN LEU VAL ILE SER VAL LYS ASP MET GLY SEQRES 16 B 440 GLY GLN SER GLU ASN SER PHE SER ASP THR THR SER VAL SEQRES 17 B 440 ASP ILE ILE VAL THR GLU ASN ILE TRP LYS ALA PRO LYS SEQRES 18 B 440 PRO VAL GLU MET VAL GLU ASN SER THR ASP PRO HIS PRO SEQRES 19 B 440 ILE LYS ILE THR GLN VAL ARG TRP ASN ASP PRO GLY ALA SEQRES 20 B 440 GLN TYR SER LEU VAL ASP LYS GLU LYS LEU PRO ARG PHE SEQRES 21 B 440 PRO PHE SER ILE ASP GLN GLU GLY ASP ILE TYR VAL THR SEQRES 22 B 440 GLN PRO LEU ASP ARG GLU GLU LYS ASP ALA TYR VAL PHE SEQRES 23 B 440 TYR ALA VAL ALA LYS ASP GLU TYR GLY LYS PRO LEU SER SEQRES 24 B 440 TYR PRO LEU GLU ILE HIS VAL LYS VAL LYS ASP ILE ASN SEQRES 25 B 440 ASP ASN PRO PRO THR CYS PRO SER PRO VAL THR VAL PHE SEQRES 26 B 440 GLU VAL GLN GLU ASN GLU ARG LEU GLY ASN SER ILE GLY SEQRES 27 B 440 THR LEU THR ALA HIS ASP ARG ASP GLU GLU ASN THR ALA SEQRES 28 B 440 ASN SER PHE LEU ASN TYR ARG ILE VAL GLU GLN THR PRO SEQRES 29 B 440 LYS LEU PRO MET ASP GLY LEU PHE LEU ILE GLN THR TYR SEQRES 30 B 440 ALA GLY MET LEU GLN LEU ALA LYS GLN SER LEU LYS LYS SEQRES 31 B 440 GLN ASP THR PRO GLN TYR ASN LEU THR ILE GLU VAL SER SEQRES 32 B 440 ASP LYS ASP PHE LYS THR LEU CYS PHE VAL GLN ILE ASN SEQRES 33 B 440 VAL ILE ASP GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 34 B 440 ASN SER ALA VAL ASP HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET NAG A 501 14 HET NAG A 502 14 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET CA A 507 1 HET CA A 508 1 HET NAG B 501 14 HET CA B 502 1 HET CA B 503 1 HET CA B 504 1 HET CA B 505 1 HET CA B 506 1 HET CA B 507 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 8 CA 12(CA 2+) FORMUL 21 HOH *33(H2 O) HELIX 1 AA1 THR A 158 GLN A 162 5 5 HELIX 2 AA2 THR A 192 LEU A 199 1 8 HELIX 3 AA3 MET A 216 GLN A 219 5 4 HELIX 4 AA4 THR B 158 GLN B 162 5 5 HELIX 5 AA5 THR B 192 LEU B 199 1 8 HELIX 6 AA6 MET B 216 GLN B 219 5 4 SHEET 1 AA1 4 SER A 28 PRO A 30 0 SHEET 2 AA1 4 ILE A 47 LYS A 52 1 O GLN A 50 N GLY A 29 SHEET 3 AA1 4 LEU A 77 TYR A 80 -1 O LEU A 78 N PHE A 49 SHEET 4 AA1 4 PHE A 70 ILE A 72 -1 N VAL A 71 O TYR A 79 SHEET 1 AA2 4 MET A 34 TYR A 39 0 SHEET 2 AA2 4 ILE A 105 LYS A 117 1 O LYS A 115 N PHE A 36 SHEET 3 AA2 4 THR A 91 ASP A 100 -1 N HIS A 92 O ILE A 114 SHEET 4 AA2 4 ALA A 57 GLY A 64 -1 N THR A 59 O LEU A 99 SHEET 1 AA3 2 THR A 125 PHE A 126 0 SHEET 2 AA3 2 ALA A 150 THR A 151 -1 O THR A 151 N THR A 125 SHEET 1 AA4 4 LYS A 130 ARG A 136 0 SHEET 2 AA4 4 SER A 225 THR A 235 1 O SER A 229 N TYR A 131 SHEET 3 AA4 4 SER A 206 LYS A 214 -1 N LEU A 209 O VAL A 230 SHEET 4 AA4 4 TYR A 164 LEU A 171 -1 N VAL A 168 O VAL A 210 SHEET 1 AA5 3 LEU A 146 TYR A 147 0 SHEET 2 AA5 3 ALA A 188 LEU A 191 -1 O ILE A 189 N LEU A 146 SHEET 3 AA5 3 PHE A 180 ILE A 182 -1 N GLN A 181 O SER A 190 SHEET 1 AA6 4 VAL A 245 VAL A 248 0 SHEET 2 AA6 4 LEU A 324 LYS A 331 1 O LYS A 329 N VAL A 245 SHEET 3 AA6 4 ALA A 305 LYS A 313 -1 N PHE A 308 O ILE A 326 SHEET 4 AA6 4 GLN A 270 ASP A 275 -1 N VAL A 274 O TYR A 309 SHEET 1 AA7 3 ILE A 257 GLN A 261 0 SHEET 2 AA7 3 ASP A 291 VAL A 294 -1 O ILE A 292 N ILE A 259 SHEET 3 AA7 3 PHE A 284 ILE A 286 -1 N SER A 285 O TYR A 293 SHEET 1 AA8 4 VAL A 344 GLN A 350 0 SHEET 2 AA8 4 LYS A 430 ILE A 440 1 O GLN A 436 N PHE A 347 SHEET 3 AA8 4 GLN A 417 SER A 425 -1 N ILE A 422 O CYS A 433 SHEET 4 AA8 4 ASN A 378 THR A 385 -1 N VAL A 382 O THR A 421 SHEET 1 AA9 3 SER A 358 THR A 361 0 SHEET 2 AA9 3 MET A 402 LEU A 405 -1 O LEU A 403 N ILE A 359 SHEET 3 AA9 3 PHE A 394 ILE A 396 -1 N LEU A 395 O GLN A 404 SHEET 1 AB1 4 SER B 28 PRO B 30 0 SHEET 2 AB1 4 PHE B 49 LYS B 52 1 O LYS B 52 N GLY B 29 SHEET 3 AB1 4 LEU B 77 TYR B 80 -1 O LEU B 78 N PHE B 49 SHEET 4 AB1 4 PHE B 70 ILE B 72 -1 N VAL B 71 O TYR B 79 SHEET 1 AB2 4 MET B 34 TYR B 39 0 SHEET 2 AB2 4 ILE B 105 LYS B 117 1 O LYS B 115 N PHE B 36 SHEET 3 AB2 4 THR B 91 LEU B 99 -1 N HIS B 92 O ILE B 114 SHEET 4 AB2 4 THR B 59 GLY B 64 -1 N THR B 59 O LEU B 99 SHEET 1 AB3 2 THR B 125 PHE B 126 0 SHEET 2 AB3 2 ALA B 150 THR B 151 -1 O THR B 151 N THR B 125 SHEET 1 AB4 4 LYS B 130 ARG B 136 0 SHEET 2 AB4 4 SER B 225 THR B 235 1 O ASP B 231 N TYR B 131 SHEET 3 AB4 4 SER B 206 LYS B 214 -1 N LEU B 209 O VAL B 230 SHEET 4 AB4 4 TYR B 164 LEU B 171 -1 N VAL B 168 O VAL B 210 SHEET 1 AB5 3 LEU B 146 TYR B 147 0 SHEET 2 AB5 3 ALA B 188 LEU B 191 -1 O ILE B 189 N LEU B 146 SHEET 3 AB5 3 PHE B 180 ILE B 182 -1 N GLN B 181 O SER B 190 SHEET 1 AB6 4 VAL B 245 VAL B 248 0 SHEET 2 AB6 4 LEU B 324 LYS B 331 1 O LYS B 329 N VAL B 245 SHEET 3 AB6 4 ALA B 305 VAL B 311 -1 N PHE B 308 O ILE B 326 SHEET 4 AB6 4 SER B 272 VAL B 274 -1 N VAL B 274 O TYR B 309 SHEET 1 AB7 3 ILE B 257 GLN B 261 0 SHEET 2 AB7 3 ASP B 291 VAL B 294 -1 O ILE B 292 N ILE B 259 SHEET 3 AB7 3 PHE B 284 ILE B 286 -1 N SER B 285 O TYR B 293 SHEET 1 AB8 4 VAL B 344 GLN B 350 0 SHEET 2 AB8 4 LYS B 430 ILE B 440 1 O ASN B 438 N PHE B 347 SHEET 3 AB8 4 GLN B 417 SER B 425 -1 N LEU B 420 O VAL B 435 SHEET 4 AB8 4 ASN B 378 THR B 385 -1 N VAL B 382 O THR B 421 SHEET 1 AB9 3 SER B 358 THR B 361 0 SHEET 2 AB9 3 MET B 402 LEU B 405 -1 O LEU B 403 N ILE B 359 SHEET 3 AB9 3 PHE B 394 ILE B 396 -1 N LEU B 395 O GLN B 404 SSBOND 1 CYS A 340 CYS A 433 1555 1555 2.07 SSBOND 2 CYS B 340 CYS B 433 1555 1555 2.06 LINK ND2 ASN A 149 C1 NAG A 501 1555 1555 1.48 LINK ND2 ASN A 184 C1 NAG A 502 1555 1555 1.43 LINK ND2 ASN A 250 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 419 C1 NAG D 1 1555 1555 1.47 LINK ND2 ASN B 184 C1 NAG B 501 1555 1555 1.44 LINK ND2 ASN B 250 C1 NAG E 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.41 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.48 LINK OE2 GLU A 40 CA CA A 504 1555 1555 2.50 LINK OE1 GLU A 40 CA CA A 505 1555 1555 2.49 LINK OD1 ASP A 85 CA CA A 505 1555 1555 2.33 LINK OE1 GLU A 87 CA CA A 504 1555 1555 2.99 LINK OE2 GLU A 87 CA CA A 504 1555 1555 2.11 LINK OE1 GLU A 87 CA CA A 505 1555 1555 2.17 LINK OD1 ASP A 118 CA CA A 504 1555 1555 2.29 LINK O ILE A 119 CA CA A 504 1555 1555 2.18 LINK OD1 ASN A 120 CA CA A 503 1555 1555 2.33 LINK OD1 ASP A 121 CA CA A 504 1555 1555 2.36 LINK OD1 ASP A 121 CA CA A 505 1555 1555 3.18 LINK OD2 ASP A 121 CA CA A 505 1555 1555 2.20 LINK O ASN A 122 CA CA A 503 1555 1555 2.27 LINK OD1 ASP A 152 CA CA A 503 1555 1555 2.46 LINK OD2 ASP A 152 CA CA A 503 1555 1555 2.42 LINK OD2 ASP A 154 CA CA A 503 1555 1555 2.18 LINK OD1 ASP A 154 CA CA A 504 1555 1555 2.53 LINK O ASN A 160 CA CA A 503 1555 1555 2.34 LINK OD2 ASP A 215 CA CA A 503 1555 1555 2.49 LINK OE1 GLU A 249 CA CA A 506 1555 1555 2.76 LINK OE2 GLU A 249 CA CA A 507 1555 1555 2.81 LINK OD1 ASP A 299 CA CA A 506 1555 1555 2.11 LINK OE1 GLU A 301 CA CA A 506 1555 1555 2.35 LINK OE1 GLU A 301 CA CA A 507 1555 1555 2.72 LINK OE2 GLU A 301 CA CA A 507 1555 1555 2.06 LINK OD1 ASP A 332 CA CA A 507 1555 1555 2.30 LINK O ILE A 333 CA CA A 507 1555 1555 2.30 LINK OD1 ASN A 334 CA CA A 508 1555 1555 2.34 LINK OD2 ASP A 335 CA CA A 506 1555 1555 3.07 LINK OD2 ASP A 335 CA CA A 507 1555 1555 2.12 LINK O ASN A 336 CA CA A 508 1555 1555 2.29 LINK OD1 ASP A 366 CA CA A 508 1555 1555 2.38 LINK OD2 ASP A 366 CA CA A 508 1555 1555 2.45 LINK OD1 ASP A 368 CA CA A 507 1555 1555 2.93 LINK OD2 ASP A 368 CA CA A 508 1555 1555 2.78 LINK O ASN A 374 CA CA A 508 1555 1555 2.35 LINK OD2 ASP A 426 CA CA A 508 1555 1555 2.41 LINK CA CA A 506 O7 NAG C 1 1555 1555 2.37 LINK OE2 GLU B 40 CA CA B 502 1555 1555 2.44 LINK OE1 GLU B 40 CA CA B 503 1555 1555 2.40 LINK OD1 ASP B 85 CA CA B 503 1555 1555 2.27 LINK OE1 GLU B 87 CA CA B 502 1555 1555 2.94 LINK OE2 GLU B 87 CA CA B 502 1555 1555 2.16 LINK OE1 GLU B 87 CA CA B 503 1555 1555 2.34 LINK OD1 ASP B 118 CA CA B 502 1555 1555 2.39 LINK O ILE B 119 CA CA B 502 1555 1555 2.15 LINK OD1 ASN B 120 CA CA B 504 1555 1555 2.37 LINK OD1 ASP B 121 CA CA B 502 1555 1555 2.25 LINK OD2 ASP B 121 CA CA B 503 1555 1555 2.28 LINK O ASN B 122 CA CA B 504 1555 1555 2.25 LINK OD1 ASP B 152 CA CA B 504 1555 1555 2.42 LINK OD2 ASP B 152 CA CA B 504 1555 1555 2.40 LINK OD2 ASP B 154 CA CA B 504 1555 1555 2.79 LINK O ASN B 160 CA CA B 504 1555 1555 2.31 LINK OD2 ASP B 215 CA CA B 504 1555 1555 2.56 LINK OE2 GLU B 249 CA CA B 505 1555 1555 2.57 LINK OE1 GLU B 249 CA CA B 506 1555 1555 2.44 LINK OD1 ASP B 299 CA CA B 506 1555 1555 2.24 LINK OE1 GLU B 301 CA CA B 505 1555 1555 2.57 LINK OE2 GLU B 301 CA CA B 505 1555 1555 2.09 LINK OE1 GLU B 301 CA CA B 506 1555 1555 2.21 LINK OD1 ASP B 332 CA CA B 505 1555 1555 2.31 LINK O ILE B 333 CA CA B 505 1555 1555 2.38 LINK OD1 ASN B 334 CA CA B 507 1555 1555 2.35 LINK OD2 ASP B 335 CA CA B 505 1555 1555 2.05 LINK OD1 ASP B 335 CA CA B 506 1555 1555 1.98 LINK OD2 ASP B 335 CA CA B 506 1555 1555 3.14 LINK O ASN B 336 CA CA B 507 1555 1555 2.36 LINK OD1 ASP B 366 CA CA B 507 1555 1555 2.30 LINK OD2 ASP B 366 CA CA B 507 1555 1555 2.42 LINK OD1 ASP B 368 CA CA B 505 1555 1555 3.13 LINK OD2 ASP B 368 CA CA B 507 1555 1555 2.79 LINK O ASN B 374 CA CA B 507 1555 1555 2.34 LINK OD2 ASP B 426 CA CA B 507 1555 1555 2.39 LINK CA CA B 503 O HOH B 621 1555 1555 2.54 LINK CA CA B 506 O HOH B 604 1555 1555 2.46 LINK CA CA B 506 O7 NAG E 1 1555 1555 2.32 CISPEP 1 PRO A 55 PRO A 56 0 9.72 CISPEP 2 GLY A 108 PRO A 109 0 3.90 CISPEP 3 LEU A 171 PRO A 172 0 -2.67 CISPEP 4 HIS A 255 PRO A 256 0 -8.19 CISPEP 5 THR A 385 PRO A 386 0 -7.85 CISPEP 6 LEU A 388 PRO A 389 0 -4.65 CISPEP 7 PRO B 55 PRO B 56 0 9.91 CISPEP 8 GLY B 108 PRO B 109 0 2.95 CISPEP 9 LEU B 171 PRO B 172 0 -3.28 CISPEP 10 HIS B 255 PRO B 256 0 8.60 CISPEP 11 THR B 385 PRO B 386 0 -9.44 CISPEP 12 LEU B 388 PRO B 389 0 0.06 CRYST1 80.360 70.840 134.219 90.00 98.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012444 0.000000 0.001902 0.00000 SCALE2 0.000000 0.014116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007537 0.00000