HEADER TRANSPORT PROTEIN 07-SEP-20 7CZ2 TITLE THE COMPLEX STRUCTURE OF MSMEG_1954-ADP FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC1 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS (STRAIN ATCC 700084 SOURCE 3 / MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 GENE: MSMEG_1954; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ANTIBIOTIC BINDING, ADP BINDING, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHANG,Z.H.RAO REVDAT 3 29-NOV-23 7CZ2 1 REMARK REVDAT 2 23-FEB-22 7CZ2 1 JRNL REVDAT 1 08-DEC-21 7CZ2 0 JRNL AUTH Q.ZHANG,X.LIU,H.LIU,B.ZHANG,H.YANG,K.MI,L.W.GUDDAT,Z.RAO JRNL TITL CONFORMATIONAL CHANGES IN A MACROLIDE ANTIBIOTIC BINDING JRNL TITL 2 PROTEIN FROM MYCOBACTERIUM SMEGMATIS UPON ADP BINDING. JRNL REF FRONT MICROBIOL V. 12 80954 2021 JRNL REFN ESSN 1664-302X JRNL PMID 34956144 JRNL DOI 10.3389/FMICB.2021.780954 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 35129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1878 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2425 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2540 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2405 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3449 ; 1.737 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5570 ; 1.402 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 7.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;33.305 ;21.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;13.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.306 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2820 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 518 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7CZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38277 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 1.09800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YJZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE HYDRATE, 0.1M REMARK 280 SODIUM CACODYLATE TRIHYDRATE (PH6.5), 18% PEG 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.17333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.58667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.58667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.17333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 848 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 ASN A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 LEU A 28 REMARK 465 GLY A 29 REMARK 465 PHE A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 ARG A 33 REMARK 465 LEU A 34 REMARK 465 THR A 35 REMARK 465 GLY A 36 REMARK 465 LYS A 37 REMARK 465 SER A 38 REMARK 465 LYS A 39 REMARK 465 ASP A 40 REMARK 465 GLU A 41 REMARK 465 VAL A 42 REMARK 465 THR A 43 REMARK 465 ALA A 44 REMARK 465 GLU A 45 REMARK 465 LEU A 46 REMARK 465 MET A 47 REMARK 465 ASP A 48 REMARK 465 LYS A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 GLN A 52 REMARK 465 GLN A 53 REMARK 465 LEU A 54 REMARK 465 PHE A 55 REMARK 465 THR A 56 REMARK 465 VAL A 57 REMARK 465 LEU A 58 REMARK 465 GLY A 59 REMARK 465 GLU A 60 REMARK 465 LEU A 61 REMARK 465 LYS A 62 REMARK 465 GLY A 63 REMARK 465 GLY A 64 REMARK 465 ALA A 65 REMARK 465 MET A 66 REMARK 465 LYS A 67 REMARK 465 VAL A 68 REMARK 465 GLY A 69 REMARK 465 GLN A 70 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 SER A 73 REMARK 465 VAL A 74 REMARK 465 MET A 75 REMARK 465 GLU A 76 REMARK 465 ALA A 77 REMARK 465 ALA A 78 REMARK 465 ILE A 79 REMARK 465 PRO A 80 REMARK 465 GLU A 81 REMARK 465 GLN A 82 REMARK 465 TYR A 83 REMARK 465 GLY A 84 REMARK 465 LYS A 85 REMARK 465 PRO A 86 REMARK 465 TYR A 87 REMARK 465 ARG A 88 REMARK 465 GLU A 89 REMARK 465 ALA A 90 REMARK 465 LEU A 91 REMARK 465 THR A 92 REMARK 465 LYS A 93 REMARK 465 LEU A 94 REMARK 465 GLN A 95 REMARK 465 LYS A 96 REMARK 465 ASP A 97 REMARK 465 ALA A 98 REMARK 465 PRO A 99 REMARK 465 PHE A 338 REMARK 465 LEU A 339 REMARK 465 GLN A 340 REMARK 465 LYS A 341 REMARK 465 GLY A 342 REMARK 465 GLN A 343 REMARK 465 GLU A 344 REMARK 465 MET A 381 REMARK 465 ASP A 382 REMARK 465 ASN A 383 REMARK 465 SER A 384 REMARK 465 VAL A 385 REMARK 465 ALA A 386 REMARK 465 GLN A 387 REMARK 465 ILE A 388 REMARK 465 LYS A 389 REMARK 465 MET A 390 REMARK 465 ALA A 391 REMARK 465 ARG A 392 REMARK 465 SER A 393 REMARK 465 LEU A 394 REMARK 465 ASP A 395 REMARK 465 LEU A 396 REMARK 465 GLU A 436 REMARK 465 GLU A 437 REMARK 465 ALA A 438 REMARK 465 ALA A 439 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 180 55.21 -108.20 REMARK 500 GLU A 251 28.31 -147.00 REMARK 500 LEU A 275 20.65 -146.24 REMARK 500 ASP A 299 93.11 67.37 REMARK 500 MET A 376 -17.52 -48.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 286 OD1 REMARK 620 2 ASP A 299 OD2 82.7 REMARK 620 3 ADP A 501 O2B 141.0 62.9 REMARK 620 4 ADP A 501 O1A 91.1 102.3 79.7 REMARK 620 5 HOH A 632 O 142.5 131.2 76.4 95.4 REMARK 620 6 HOH A 738 O 85.8 91.7 111.6 165.2 78.6 REMARK 620 7 HOH A 771 O 82.1 164.7 131.9 79.7 63.0 85.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 299 OD1 REMARK 620 2 ASP A 299 OD2 52.9 REMARK 620 3 ADP A 501 O2B 91.7 64.0 REMARK 620 4 HOH A 687 O 157.1 139.1 82.7 REMARK 620 5 HOH A 701 O 80.7 125.2 93.8 77.6 REMARK 620 6 HOH A 721 O 130.8 85.7 92.1 71.8 147.8 REMARK 620 7 HOH A 751 O 104.4 140.5 155.5 75.3 71.2 91.2 REMARK 620 8 HOH A 758 O 78.1 74.9 134.3 121.3 127.2 64.8 68.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN WAS EXPRESSION WITH FOLLOWING SEQUENCE: REMARK 999 MSPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQS REMARK 999 MAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDR REMARK 999 LCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQ REMARK 999 GWQATFGGGDHPPKLEVLFQGPLGSPEFMSDIKRGSVARNAKLAGLAGGMAGRAALGFGKRLTGKSKD REMARK 999 EVTAELMDKAAQQLFTVLGELKGGAMKVGQALSVMEAAIPEQYGKPYREALTKLQKDAPPLPAAKVHR REMARK 999 VLDAQLGTKWRDRFSSFDDKPVASASIGQVHKGIWSDGREVAVKIQYPGADEALRADLKTIQRLVGVF REMARK 999 KQLAPGADIQGVVDELTERTEMELDYRLEADNQRAFAKAYRNDPHFAVPAIIASAPKVVISEWMEGIP REMARK 999 MSVIIREGTPEQRDLMGTRLTELTFGAPARLEMMHGDAHPGNFMLLPDGRMGVIDFGAVAPLPGGFPT REMARK 999 SLGETIRLARDKNYDELLPTMERAGFLQKGQEVSIEEVEDMLRQYVDPIKVDVFHYNRKWLQKMAASQ REMARK 999 MDNSVAQIKMARSLDLPANLAIPLRVIASTVAICCQLDAHVPVKVIATELVPGFAEEAA HOWEVER, REMARK 999 THE PROTEIN WAS DEGRADED DURING CRYSTALLIZATION AND THE EXACT REMARK 999 SEQUENCE OF THE PROTEIN AFTER DEGRADATION WAS NOT IDENTIFIED. DBREF 7CZ2 A 1 439 UNP A0QTT2 A0QTT2_MYCS2 1 439 SEQRES 1 A 439 MET SER ASP ILE LYS ARG GLY SER VAL ALA ARG ASN ALA SEQRES 2 A 439 LYS LEU ALA GLY LEU ALA GLY GLY MET ALA GLY ARG ALA SEQRES 3 A 439 ALA LEU GLY PHE GLY LYS ARG LEU THR GLY LYS SER LYS SEQRES 4 A 439 ASP GLU VAL THR ALA GLU LEU MET ASP LYS ALA ALA GLN SEQRES 5 A 439 GLN LEU PHE THR VAL LEU GLY GLU LEU LYS GLY GLY ALA SEQRES 6 A 439 MET LYS VAL GLY GLN ALA LEU SER VAL MET GLU ALA ALA SEQRES 7 A 439 ILE PRO GLU GLN TYR GLY LYS PRO TYR ARG GLU ALA LEU SEQRES 8 A 439 THR LYS LEU GLN LYS ASP ALA PRO PRO LEU PRO ALA ALA SEQRES 9 A 439 LYS VAL HIS ARG VAL LEU ASP ALA GLN LEU GLY THR LYS SEQRES 10 A 439 TRP ARG ASP ARG PHE SER SER PHE ASP ASP LYS PRO VAL SEQRES 11 A 439 ALA SER ALA SER ILE GLY GLN VAL HIS LYS GLY ILE TRP SEQRES 12 A 439 SER ASP GLY ARG GLU VAL ALA VAL LYS ILE GLN TYR PRO SEQRES 13 A 439 GLY ALA ASP GLU ALA LEU ARG ALA ASP LEU LYS THR ILE SEQRES 14 A 439 GLN ARG LEU VAL GLY VAL PHE LYS GLN LEU ALA PRO GLY SEQRES 15 A 439 ALA ASP ILE GLN GLY VAL VAL ASP GLU LEU THR GLU ARG SEQRES 16 A 439 THR GLU MET GLU LEU ASP TYR ARG LEU GLU ALA ASP ASN SEQRES 17 A 439 GLN ARG ALA PHE ALA LYS ALA TYR ARG ASN ASP PRO HIS SEQRES 18 A 439 PHE ALA VAL PRO ALA ILE ILE ALA SER ALA PRO LYS VAL SEQRES 19 A 439 VAL ILE SER GLU TRP MET GLU GLY ILE PRO MET SER VAL SEQRES 20 A 439 ILE ILE ARG GLU GLY THR PRO GLU GLN ARG ASP LEU MET SEQRES 21 A 439 GLY THR ARG LEU THR GLU LEU THR PHE GLY ALA PRO ALA SEQRES 22 A 439 ARG LEU GLU MET MET HIS GLY ASP ALA HIS PRO GLY ASN SEQRES 23 A 439 PHE MET LEU LEU PRO ASP GLY ARG MET GLY VAL ILE ASP SEQRES 24 A 439 PHE GLY ALA VAL ALA PRO LEU PRO GLY GLY PHE PRO THR SEQRES 25 A 439 SER LEU GLY GLU THR ILE ARG LEU ALA ARG ASP LYS ASN SEQRES 26 A 439 TYR ASP GLU LEU LEU PRO THR MET GLU ARG ALA GLY PHE SEQRES 27 A 439 LEU GLN LYS GLY GLN GLU VAL SER ILE GLU GLU VAL GLU SEQRES 28 A 439 ASP MET LEU ARG GLN TYR VAL ASP PRO ILE LYS VAL ASP SEQRES 29 A 439 VAL PHE HIS TYR ASN ARG LYS TRP LEU GLN LYS MET ALA SEQRES 30 A 439 ALA SER GLN MET ASP ASN SER VAL ALA GLN ILE LYS MET SEQRES 31 A 439 ALA ARG SER LEU ASP LEU PRO ALA ASN LEU ALA ILE PRO SEQRES 32 A 439 LEU ARG VAL ILE ALA SER THR VAL ALA ILE CYS CYS GLN SEQRES 33 A 439 LEU ASP ALA HIS VAL PRO VAL LYS VAL ILE ALA THR GLU SEQRES 34 A 439 LEU VAL PRO GLY PHE ALA GLU GLU ALA ALA HET ADP A 501 27 HET CA A 502 1 HET CA A 503 1 HET GOL A 504 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 CA 2(CA 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *315(H2 O) HELIX 1 AA1 PRO A 102 GLY A 115 1 14 HELIX 2 AA2 LYS A 117 ASP A 120 5 4 HELIX 3 AA3 GLY A 157 GLN A 178 1 22 HELIX 4 AA4 ASP A 184 LEU A 200 1 17 HELIX 5 AA5 ASP A 201 TYR A 216 1 16 HELIX 6 AA6 MET A 245 GLY A 252 1 8 HELIX 7 AA7 THR A 253 GLU A 276 1 24 HELIX 8 AA8 HIS A 283 GLY A 285 5 3 HELIX 9 AA9 THR A 312 ASP A 323 1 12 HELIX 10 AB1 ASN A 325 ALA A 336 1 12 HELIX 11 AB2 SER A 346 LEU A 354 1 9 HELIX 12 AB3 LEU A 354 ASP A 359 1 6 HELIX 13 AB4 PRO A 360 LYS A 362 5 3 HELIX 14 AB5 ASN A 369 ALA A 378 1 10 HELIX 15 AB6 ALA A 398 ASP A 418 1 21 HELIX 16 AB7 PRO A 422 VAL A 431 1 10 SHEET 1 AA1 3 PHE A 122 PHE A 125 0 SHEET 2 AA1 3 GLY A 136 TRP A 143 -1 O ILE A 142 N SER A 123 SHEET 3 AA1 3 ALA A 131 ALA A 133 -1 N ALA A 131 O VAL A 138 SHEET 1 AA2 5 PHE A 122 PHE A 125 0 SHEET 2 AA2 5 GLY A 136 TRP A 143 -1 O ILE A 142 N SER A 123 SHEET 3 AA2 5 GLU A 148 GLN A 154 -1 O VAL A 151 N HIS A 139 SHEET 4 AA2 5 VAL A 234 GLU A 238 -1 O VAL A 235 N LYS A 152 SHEET 5 AA2 5 ILE A 227 SER A 230 -1 N ILE A 228 O ILE A 236 SHEET 1 AA3 4 PHE A 222 ALA A 223 0 SHEET 2 AA3 4 MET A 295 VAL A 297 1 O MET A 295 N ALA A 223 SHEET 3 AA3 4 PHE A 287 LEU A 289 -1 N MET A 288 O GLY A 296 SHEET 4 AA3 4 ILE A 243 PRO A 244 -1 N ILE A 243 O LEU A 289 SHEET 1 AA4 2 MET A 277 MET A 278 0 SHEET 2 AA4 2 ALA A 304 PRO A 305 -1 O ALA A 304 N MET A 278 SHEET 1 AA5 2 PHE A 366 HIS A 367 0 SHEET 2 AA5 2 HIS A 420 VAL A 421 -1 O VAL A 421 N PHE A 366 LINK OD1 ASN A 286 CA CA A 503 1555 1555 2.46 LINK OD1 ASP A 299 CA CA A 502 1555 1555 2.47 LINK OD2 ASP A 299 CA CA A 502 1555 1555 2.48 LINK OD2 ASP A 299 CA CA A 503 1555 1555 2.30 LINK O2B ADP A 501 CA CA A 502 1555 1555 2.30 LINK O2B ADP A 501 CA CA A 503 1555 1555 2.54 LINK O1A ADP A 501 CA CA A 503 1555 1555 2.30 LINK CA CA A 502 O HOH A 687 1555 1555 2.59 LINK CA CA A 502 O HOH A 701 1555 1555 2.44 LINK CA CA A 502 O HOH A 721 1555 6555 2.33 LINK CA CA A 502 O HOH A 751 1555 1555 2.46 LINK CA CA A 502 O HOH A 758 1555 1555 2.49 LINK CA CA A 503 O HOH A 632 1555 1555 2.39 LINK CA CA A 503 O HOH A 738 1555 1555 2.41 LINK CA CA A 503 O HOH A 771 1555 1555 2.64 CRYST1 83.650 83.650 100.760 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011955 0.006902 0.000000 0.00000 SCALE2 0.000000 0.013804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009925 0.00000