HEADER VIRAL PROTEIN 07-SEP-20 7CZ4 TITLE STRUCTURE OF SARS-COV-2 MACRO DOMAIN IN COMPLEX WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PP1A,ORF1A POLYPROTEIN,NSP3,PL2-PRO,PAPAIN-LIKE PROTEASE, COMPND 5 PAPAIN-LIKE PROTEINASE,PL-PRO,MACRO DOMAIN FROM NON-STRUCTURAL COMPND 6 PROTEIN 3; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COVID-19, SARS-COV-2, NSP3, MACRO DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.H.LIN,C.H.HSU REVDAT 4 29-NOV-23 7CZ4 1 REMARK REVDAT 3 10-MAR-21 7CZ4 1 COMPND REVDAT 2 02-DEC-20 7CZ4 1 JRNL REVDAT 1 11-NOV-20 7CZ4 0 JRNL AUTH M.H.LIN,S.C.CHANG,Y.C.CHIU,B.C.JIANG,T.H.WU,C.H.HSU JRNL TITL STRUCTURAL, BIOPHYSICAL, AND BIOCHEMICAL ELUCIDATION OF THE JRNL TITL 2 SARS-COV-2 NONSTRUCTURAL PROTEIN 3 MACRO DOMAIN. JRNL REF ACS INFECT DIS. V. 6 2970 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32946224 JRNL DOI 10.1021/ACSINFECDIS.0C00441 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 14416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6800 - 5.6800 1.00 1558 173 0.1535 0.1744 REMARK 3 2 5.6800 - 4.5200 1.00 1459 163 0.1438 0.1629 REMARK 3 3 4.5100 - 3.9500 1.00 1445 160 0.1357 0.2070 REMARK 3 4 3.9500 - 3.5900 1.00 1427 159 0.1568 0.1993 REMARK 3 5 3.5900 - 3.3300 1.00 1409 157 0.1807 0.2440 REMARK 3 6 3.3300 - 3.1300 1.00 1418 157 0.2092 0.2733 REMARK 3 7 3.1300 - 2.9800 0.99 1400 155 0.2195 0.2620 REMARK 3 8 2.9800 - 2.8500 0.91 1270 142 0.2131 0.2721 REMARK 3 9 2.8500 - 2.7400 0.66 909 101 0.2406 0.2660 REMARK 3 10 2.7400 - 2.6400 0.48 679 75 0.2333 0.3015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.289 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2663 REMARK 3 ANGLE : 1.282 3631 REMARK 3 CHIRALITY : 0.056 430 REMARK 3 PLANARITY : 0.006 456 REMARK 3 DIHEDRAL : 19.925 928 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.2134 18.9401 -1.4048 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.5444 REMARK 3 T33: 0.3009 T12: 0.0282 REMARK 3 T13: 0.0337 T23: -0.1719 REMARK 3 L TENSOR REMARK 3 L11: 2.1230 L22: 2.9838 REMARK 3 L33: 1.0140 L12: 0.5381 REMARK 3 L13: 1.1841 L23: -0.3803 REMARK 3 S TENSOR REMARK 3 S11: -0.1219 S12: -0.4734 S13: 0.2012 REMARK 3 S21: 0.3749 S22: 0.5473 S23: -0.0127 REMARK 3 S31: -0.1128 S32: 0.0437 S33: -0.1131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.5835 17.1886 0.0219 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.7867 REMARK 3 T33: 0.3946 T12: 0.0430 REMARK 3 T13: -0.0628 T23: -0.1728 REMARK 3 L TENSOR REMARK 3 L11: 1.9972 L22: 1.5445 REMARK 3 L33: 0.1748 L12: 1.0072 REMARK 3 L13: 0.2153 L23: 0.3043 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.8612 S13: 0.3874 REMARK 3 S21: 0.4030 S22: 0.2864 S23: -0.3524 REMARK 3 S31: -0.0715 S32: 0.4575 S33: -0.0194 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8909 15.7696 -10.9898 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.2980 REMARK 3 T33: 0.4014 T12: -0.0370 REMARK 3 T13: -0.0775 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 3.9218 L22: 1.5014 REMARK 3 L33: 2.0015 L12: 0.3684 REMARK 3 L13: 0.2583 L23: 0.8132 REMARK 3 S TENSOR REMARK 3 S11: -0.3457 S12: 0.4533 S13: 0.3476 REMARK 3 S21: -0.0475 S22: 0.3195 S23: 0.3107 REMARK 3 S31: -0.3217 S32: 0.1712 S33: 0.0989 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9382 7.0564 -14.9546 REMARK 3 T TENSOR REMARK 3 T11: 0.2339 T22: 0.3548 REMARK 3 T33: 0.3326 T12: -0.0322 REMARK 3 T13: -0.0591 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.0054 L22: 1.4207 REMARK 3 L33: 2.8967 L12: -0.2493 REMARK 3 L13: -0.8389 L23: 0.7388 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.7500 S13: -0.0424 REMARK 3 S21: -0.4268 S22: -0.1008 S23: 0.5082 REMARK 3 S31: 0.0203 S32: -0.5212 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2873 -5.2770 -19.4679 REMARK 3 T TENSOR REMARK 3 T11: 0.5440 T22: 0.3203 REMARK 3 T33: 0.2872 T12: 0.0723 REMARK 3 T13: -0.0242 T23: -0.2178 REMARK 3 L TENSOR REMARK 3 L11: 2.0488 L22: 2.5362 REMARK 3 L33: 0.5669 L12: 0.3430 REMARK 3 L13: -0.9417 L23: -0.5555 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 1.1654 S13: -0.6382 REMARK 3 S21: -0.4150 S22: 0.3159 S23: 0.2699 REMARK 3 S31: 0.9296 S32: 0.1134 S33: 0.4553 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7727 0.5717 -10.8889 REMARK 3 T TENSOR REMARK 3 T11: 0.2710 T22: 0.2407 REMARK 3 T33: 0.2019 T12: 0.0444 REMARK 3 T13: 0.0314 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.4155 L22: 0.8855 REMARK 3 L33: 1.3675 L12: 0.0918 REMARK 3 L13: -0.0845 L23: 0.0036 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: 0.3934 S13: -0.3517 REMARK 3 S21: -0.0091 S22: -0.0696 S23: 0.0538 REMARK 3 S31: 0.4329 S32: 0.2702 S33: 0.0817 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9344 3.0833 -8.0326 REMARK 3 T TENSOR REMARK 3 T11: 0.3090 T22: 0.1411 REMARK 3 T33: 0.2047 T12: -0.0299 REMARK 3 T13: -0.0218 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.0150 L22: 0.9279 REMARK 3 L33: 3.4458 L12: -0.5485 REMARK 3 L13: -0.1321 L23: -1.1913 REMARK 3 S TENSOR REMARK 3 S11: 0.1095 S12: -0.0089 S13: 0.0509 REMARK 3 S21: 0.3732 S22: -0.1148 S23: 0.3521 REMARK 3 S31: 0.1320 S32: 0.1324 S33: 0.0928 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5408 8.7337 -4.5701 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: 0.1315 REMARK 3 T33: 0.1999 T12: 0.0080 REMARK 3 T13: -0.0060 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.2186 L22: 1.1200 REMARK 3 L33: 1.5989 L12: 0.0989 REMARK 3 L13: -0.3866 L23: -0.6831 REMARK 3 S TENSOR REMARK 3 S11: 0.0634 S12: 0.0605 S13: -0.1674 REMARK 3 S21: 0.0925 S22: -0.0180 S23: 0.1189 REMARK 3 S31: 0.1227 S32: 0.0361 S33: -0.0062 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7483 9.7310 2.3776 REMARK 3 T TENSOR REMARK 3 T11: 0.3102 T22: 0.2015 REMARK 3 T33: 0.3796 T12: -0.0348 REMARK 3 T13: 0.0570 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 2.7129 L22: 3.9960 REMARK 3 L33: 3.9688 L12: -0.4884 REMARK 3 L13: 0.3289 L23: 0.0668 REMARK 3 S TENSOR REMARK 3 S11: -0.1998 S12: -0.1618 S13: 0.1783 REMARK 3 S21: 0.2938 S22: 0.0138 S23: -0.1377 REMARK 3 S31: 0.1726 S32: -0.2104 S33: -0.0174 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.8509 7.6530 2.9709 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 1.1936 REMARK 3 T33: 0.2236 T12: 0.2127 REMARK 3 T13: -0.2254 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.4596 L22: 0.7960 REMARK 3 L33: 1.8676 L12: 0.2302 REMARK 3 L13: 1.8002 L23: 0.4210 REMARK 3 S TENSOR REMARK 3 S11: -0.1544 S12: -0.2066 S13: -0.1906 REMARK 3 S21: 0.1728 S22: 0.0695 S23: -0.1413 REMARK 3 S31: 0.0385 S32: 0.0789 S33: -0.1680 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5237 9.4304 -5.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.1887 T22: 0.8105 REMARK 3 T33: 0.4150 T12: 0.1285 REMARK 3 T13: -0.0319 T23: -0.0980 REMARK 3 L TENSOR REMARK 3 L11: 0.4366 L22: 0.3727 REMARK 3 L33: 0.5041 L12: 0.1790 REMARK 3 L13: -0.4716 L23: -0.0483 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: -0.4701 S13: -0.0501 REMARK 3 S21: 0.3174 S22: -0.0599 S23: -0.5235 REMARK 3 S31: -0.1771 S32: 0.5342 S33: -0.1704 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5277 10.3046 -17.9236 REMARK 3 T TENSOR REMARK 3 T11: 0.1686 T22: 0.3422 REMARK 3 T33: 0.1987 T12: 0.0725 REMARK 3 T13: 0.0496 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.0747 L22: 1.7524 REMARK 3 L33: 2.5923 L12: 0.1998 REMARK 3 L13: 1.1719 L23: -0.9775 REMARK 3 S TENSOR REMARK 3 S11: -0.2034 S12: -0.0265 S13: -0.0501 REMARK 3 S21: -0.2307 S22: 0.3170 S23: -0.1919 REMARK 3 S31: 0.2873 S32: 0.5808 S33: 0.1788 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.9600 10.3818 -20.4545 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.5399 REMARK 3 T33: 0.4104 T12: 0.0474 REMARK 3 T13: 0.0472 T23: -0.0980 REMARK 3 L TENSOR REMARK 3 L11: 0.1402 L22: 0.1742 REMARK 3 L33: 1.4103 L12: 0.1433 REMARK 3 L13: 0.4248 L23: 0.3448 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: 0.0489 S13: 0.0333 REMARK 3 S21: -0.2092 S22: 0.0120 S23: -0.5775 REMARK 3 S31: 0.0531 S32: 0.4320 S33: -0.0969 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0887 5.7912 -26.9705 REMARK 3 T TENSOR REMARK 3 T11: 0.2961 T22: 0.3432 REMARK 3 T33: 0.2170 T12: 0.0042 REMARK 3 T13: 0.0335 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 4.3693 L22: 0.0543 REMARK 3 L33: 0.2731 L12: 0.5225 REMARK 3 L13: 0.8762 L23: 0.1197 REMARK 3 S TENSOR REMARK 3 S11: -0.2460 S12: -0.0611 S13: -0.2563 REMARK 3 S21: -0.2269 S22: 0.2713 S23: -0.2724 REMARK 3 S31: 0.4303 S32: 0.2074 S33: -0.0753 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2266 6.0607 -18.4933 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.3822 REMARK 3 T33: 0.2080 T12: 0.1316 REMARK 3 T13: 0.0247 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 0.1639 L22: 0.8530 REMARK 3 L33: 0.0325 L12: 0.2562 REMARK 3 L13: 0.0394 L23: 0.0270 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.3078 S13: -0.0941 REMARK 3 S21: -0.1383 S22: 0.1794 S23: -0.1846 REMARK 3 S31: 0.3427 S32: 0.4758 S33: -0.0065 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0122 15.3625 -12.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.1797 T22: 0.2403 REMARK 3 T33: 0.2367 T12: 0.0597 REMARK 3 T13: 0.0191 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.5320 L22: 1.9248 REMARK 3 L33: 1.5368 L12: 0.5038 REMARK 3 L13: -0.4445 L23: -0.3247 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.2823 S13: 0.1989 REMARK 3 S21: -0.1521 S22: 0.1060 S23: 0.0180 REMARK 3 S31: -0.0049 S32: 0.2904 S33: -0.1086 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6752 14.6813 -9.0204 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.4747 REMARK 3 T33: 0.2070 T12: 0.0107 REMARK 3 T13: -0.0103 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.7040 L22: 4.0391 REMARK 3 L33: 1.8588 L12: 0.4240 REMARK 3 L13: -0.2983 L23: -0.6175 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: -0.8713 S13: 0.0133 REMARK 3 S21: 0.3169 S22: 0.1846 S23: 0.1232 REMARK 3 S31: -0.1941 S32: 0.7171 S33: -0.1473 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7CZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300017998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 29.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7C33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5% PRECIPITANT MIX (STOCK: 2.5% REMARK 280 MPD, 25% PEG1000, 25% PEG3350), 0.1M PH 8.5 BUFFER MIX (1M TRIS, REMARK 280 1M BICINE) AND 0.1M CARBOXYLIC ACIDS MIX (0.2M SODIUM FORMATE, REMARK 280 0.2M AMMONIUM ACETATE, 0.2M SODIUM CITRATE, 0.2M SODIUM REMARK 280 POTASSIUM, 0.2M SODIUM OXAMATE), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.62100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.36800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.36800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.81050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.36800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.36800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.43150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.36800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.36800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.81050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.36800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.36800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.43150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.62100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 MET A 2 REMARK 465 VAL A 3 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 HIS B 1 REMARK 465 MET B 2 REMARK 465 VAL B 3 REMARK 465 GLU B 170 REMARK 465 MET B 171 REMARK 465 LYS B 172 REMARK 465 SER B 173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 90 CE NZ REMARK 470 LYS B 90 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 5 66.18 -115.75 REMARK 500 HIS A 86 -137.57 59.66 REMARK 500 SER B 5 75.33 -103.04 REMARK 500 LYS B 31 81.59 25.62 REMARK 500 HIS B 86 -135.10 54.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR B 201 DBREF 7CZ4 A 3 173 UNP P0DTC1 R1A_SARS2 1025 1195 DBREF 7CZ4 B 3 173 UNP P0DTC1 R1A_SARS2 1025 1195 SEQADV 7CZ4 GLY A -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7CZ4 SER A 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7CZ4 HIS A 1 UNP P0DTC1 EXPRESSION TAG SEQADV 7CZ4 MET A 2 UNP P0DTC1 EXPRESSION TAG SEQADV 7CZ4 GLY B -1 UNP P0DTC1 EXPRESSION TAG SEQADV 7CZ4 SER B 0 UNP P0DTC1 EXPRESSION TAG SEQADV 7CZ4 HIS B 1 UNP P0DTC1 EXPRESSION TAG SEQADV 7CZ4 MET B 2 UNP P0DTC1 EXPRESSION TAG SEQRES 1 A 175 GLY SER HIS MET VAL ASN SER PHE SER GLY TYR LEU LYS SEQRES 2 A 175 LEU THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL SEQRES 3 A 175 GLU GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN SEQRES 4 A 175 ALA ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA SEQRES 5 A 175 GLY ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL SEQRES 6 A 175 GLU SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS SEQRES 7 A 175 VAL GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA SEQRES 8 A 175 LYS HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS SEQRES 9 A 175 GLY GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN SEQRES 10 A 175 PHE ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER SEQRES 11 A 175 ALA GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG SEQRES 12 A 175 VAL CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA SEQRES 13 A 175 VAL PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER SEQRES 14 A 175 PHE LEU GLU MET LYS SER SEQRES 1 B 175 GLY SER HIS MET VAL ASN SER PHE SER GLY TYR LEU LYS SEQRES 2 B 175 LEU THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL SEQRES 3 B 175 GLU GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN SEQRES 4 B 175 ALA ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA SEQRES 5 B 175 GLY ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL SEQRES 6 B 175 GLU SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS SEQRES 7 B 175 VAL GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA SEQRES 8 B 175 LYS HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS SEQRES 9 B 175 GLY GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN SEQRES 10 B 175 PHE ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER SEQRES 11 B 175 ALA GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG SEQRES 12 B 175 VAL CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA SEQRES 13 B 175 VAL PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER SEQRES 14 B 175 PHE LEU GLU MET LYS SER HET APR A 201 36 HET APR B 201 36 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 APR 2(C15 H23 N5 O14 P2) FORMUL 5 HOH *61(H2 O) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 47 ALA A 56 1 10 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 ASN A 99 GLY A 103 5 5 HELIX 5 AA5 GLN A 107 ASN A 115 1 9 HELIX 6 AA6 PHE A 116 HIS A 119 5 4 HELIX 7 AA7 ASP A 135 VAL A 147 1 13 HELIX 8 AA8 ASP A 157 LYS A 172 1 16 HELIX 9 AA9 ASP B 22 LYS B 31 1 10 HELIX 10 AB1 GLY B 47 ALA B 56 1 10 HELIX 11 AB2 ASN B 59 GLY B 73 1 15 HELIX 12 AB3 ASN B 99 GLY B 103 5 5 HELIX 13 AB4 GLN B 107 ASN B 115 1 9 HELIX 14 AB5 PHE B 116 HIS B 119 5 4 HELIX 15 AB6 ASP B 135 VAL B 147 1 13 HELIX 16 AB7 ASP B 157 PHE B 168 1 12 SHEET 1 AA1 4 LEU A 10 LYS A 11 0 SHEET 2 AA1 4 VAL A 16 ASN A 20 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 VAL A 155 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 39 0 SHEET 2 AA2 3 HIS A 91 VAL A 96 1 O VAL A 95 N ASN A 37 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N LEU A 83 O CYS A 92 SHEET 1 AA3 4 LEU B 10 LYS B 11 0 SHEET 2 AA3 4 VAL B 16 ASN B 20 -1 O ILE B 18 N LEU B 10 SHEET 3 AA3 4 ASN B 150 VAL B 155 1 O LEU B 153 N TYR B 17 SHEET 4 AA3 4 VAL B 121 ALA B 124 1 N LEU B 122 O ASN B 150 SHEET 1 AA4 3 VAL B 34 ALA B 38 0 SHEET 2 AA4 3 HIS B 91 VAL B 95 1 O VAL B 95 N ASN B 37 SHEET 3 AA4 3 SER B 80 SER B 84 -1 N LEU B 83 O CYS B 92 SITE 1 AC1 18 ASP A 22 ILE A 23 ALA A 38 ASN A 40 SITE 2 AC1 18 LYS A 44 GLY A 46 GLY A 47 GLY A 48 SITE 3 AC1 18 VAL A 49 LEU A 126 SER A 128 ALA A 129 SITE 4 AC1 18 GLY A 130 ILE A 131 PHE A 132 ALA A 154 SITE 5 AC1 18 PHE A 156 LEU A 160 SITE 1 AC2 22 ASP B 22 ILE B 23 ALA B 38 ASN B 40 SITE 2 AC2 22 LYS B 44 GLY B 46 GLY B 47 GLY B 48 SITE 3 AC2 22 VAL B 49 LEU B 126 SER B 128 ALA B 129 SITE 4 AC2 22 GLY B 130 ILE B 131 PHE B 132 ALA B 154 SITE 5 AC2 22 PHE B 156 HOH B 310 HOH B 312 HOH B 314 SITE 6 AC2 22 HOH B 323 HOH B 324 CRYST1 84.736 84.736 143.242 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006981 0.00000