HEADER TRANSFERASE 11-SEP-20 7D0S TITLE CRYSTAL STRUCTURE OF HUMAN HBO1-BRPF2 IN COMPLEX WITH SUCCINYL- TITLE 2 COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE KAT7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE ACETYLTRANSFERASE BINDING TO ORC1,LYSINE COMPND 5 ACETYLTRANSFERASE 7,MOZ,YBF2/SAS3,SAS2 AND TIP60 PROTEIN 2,MYST-2; COMPND 6 EC: 2.3.1.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BRD1 PROTEIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: BRPF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAT7, HBO1, HBOA, MYST2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BRD1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE ACETYLTRANSFERASE, COMPLEX, HBO1, BRPF2, SUCCINYL-COA, KEYWDS 2 ACYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,J.DING REVDAT 5 06-NOV-24 7D0S 1 REMARK REVDAT 4 29-NOV-23 7D0S 1 REMARK REVDAT 3 29-SEP-21 7D0S 1 JRNL REVDAT 2 28-JUL-21 7D0S 1 JRNL REVDAT 1 07-JUL-21 7D0S 0 JRNL AUTH Y.XIAO,W.LI,H.YANG,L.PAN,L.ZHANG,L.LU,J.CHEN,W.WEI,J.YE, JRNL AUTH 2 J.LI,G.LI,Y.ZHANG,M.TAN,J.DING,J.WONG JRNL TITL HBO1 IS A VERSATILE HISTONE ACYLTRANSFERASE CRITICAL FOR JRNL TITL 2 PROMOTER HISTONE ACYLATIONS. JRNL REF NUCLEIC ACIDS RES. V. 49 8037 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34259319 JRNL DOI 10.1093/NAR/GKAB607 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 15157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.35000 REMARK 3 B22 (A**2) : 5.73000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.75000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2535 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2358 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3441 ; 1.440 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5425 ; 0.992 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.124 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;38.104 ;23.524 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 425 ;17.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.528 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2777 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 574 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2535 ;19.654 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2475 ;24.215 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 609 REMARK 3 ORIGIN FOR THE GROUP (A): 199.6518 -8.4084 92.6397 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.0474 REMARK 3 T33: 0.0887 T12: -0.0057 REMARK 3 T13: 0.0013 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.4825 L22: 0.0547 REMARK 3 L33: 0.2822 L12: 0.1095 REMARK 3 L13: -0.1405 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0399 S13: 0.0165 REMARK 3 S21: 0.0316 S22: 0.0012 S23: -0.0152 REMARK 3 S31: 0.0215 S32: -0.0075 S33: -0.0008 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 65 REMARK 3 ORIGIN FOR THE GROUP (A): 170.8356 -9.2740 104.5070 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: 0.1175 REMARK 3 T33: 0.0955 T12: -0.0305 REMARK 3 T13: 0.0147 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.9609 L22: 3.3009 REMARK 3 L33: 0.2956 L12: -1.4563 REMARK 3 L13: 0.3204 L23: -0.0743 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.0353 S13: -0.0778 REMARK 3 S21: -0.0926 S22: 0.0493 S23: 0.0736 REMARK 3 S31: -0.0785 S32: 0.1072 S33: -0.0086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7D0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5GK9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M L-PROLINE, 0.1 M HEPES, PH 7.5, REMARK 280 24% W/V PEG 1500, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.54900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.78250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.54900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.78250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 610 REMARK 465 THR A 611 REMARK 465 LEU B 31 REMARK 465 THR B 32 REMARK 465 TYR B 33 REMARK 465 ALA B 34 REMARK 465 GLN B 35 REMARK 465 ALA B 36 REMARK 465 GLN B 37 REMARK 465 THR B 66 REMARK 465 ALA B 67 REMARK 465 GLN B 68 REMARK 465 GLU B 69 REMARK 465 MET B 70 REMARK 465 SER B 71 REMARK 465 GLU B 72 REMARK 465 CYS B 73 REMARK 465 ASN B 74 REMARK 465 SER B 75 REMARK 465 ASN B 76 REMARK 465 LYS B 77 REMARK 465 GLU B 78 REMARK 465 ASN B 79 REMARK 465 SER B 80 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 ARG A 382 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 467 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 524 CG CD CE NZ REMARK 470 GLU A 525 CG CD OE1 OE2 REMARK 470 LYS A 537 CG CD CE NZ REMARK 470 LYS A 569 CG CD CE NZ REMARK 470 LYS A 571 CG CD CE NZ REMARK 470 GLN A 578 CG CD OE1 NE2 REMARK 470 GLU A 583 CG CD OE1 OE2 REMARK 470 LYS A 587 CG CD CE NZ REMARK 470 GLU A 588 CG CD OE1 OE2 REMARK 470 LYS A 590 CG CD CE NZ REMARK 470 ARG A 591 CG CD NE CZ NH1 NH2 REMARK 470 SER A 592 OG REMARK 470 ASN A 593 CG OD1 ND2 REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 ILE B 44 CG1 CG2 CD1 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 LEU B 65 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 394 -169.74 -74.13 REMARK 500 ASN A 414 55.61 -141.53 REMARK 500 ASP A 450 -168.44 -119.91 REMARK 500 ILE B 42 140.61 159.14 REMARK 500 GLU B 62 -71.44 -145.45 REMARK 500 ASP B 63 65.22 37.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 368 SG REMARK 620 2 CYS A 371 SG 105.0 REMARK 620 3 HIS A 384 NE2 89.1 107.1 REMARK 620 4 CYS A 388 SG 106.3 136.2 103.2 REMARK 620 N 1 2 3 DBREF 7D0S A 336 611 UNP O95251 KAT7_HUMAN 336 611 DBREF 7D0S B 31 80 UNP Q86X06 Q86X06_HUMAN 31 80 SEQRES 1 A 276 MET ILE LYS THR ILE ALA PHE GLY ARG TYR GLU LEU ASP SEQRES 2 A 276 THR TRP TYR HIS SER PRO TYR PRO GLU GLU TYR ALA ARG SEQRES 3 A 276 LEU GLY ARG LEU TYR MET CYS GLU PHE CYS LEU LYS TYR SEQRES 4 A 276 MET LYS SER GLN THR ILE LEU ARG ARG HIS MET ALA LYS SEQRES 5 A 276 CYS VAL TRP LYS HIS PRO PRO GLY ASP GLU ILE TYR ARG SEQRES 6 A 276 LYS GLY SER ILE SER VAL PHE GLU VAL ASP GLY LYS LYS SEQRES 7 A 276 ASN LYS ILE TYR CYS GLN ASN LEU CYS LEU LEU ALA LYS SEQRES 8 A 276 LEU PHE LEU ASP HIS ALY THR LEU TYR TYR ASP VAL GLU SEQRES 9 A 276 PRO PHE LEU PHE TYR VAL MET THR GLU ALA ASP ASN THR SEQRES 10 A 276 GLY CYS HIS LEU ILE GLY TYR PHE SER LYS GLU LYS ASN SEQRES 11 A 276 SER PHE LEU ASN TYR ASN VAL SER CYS ILE LEU THR MET SEQRES 12 A 276 PRO GLN TYR MET ARG GLN GLY TYR GLY LYS MET LEU ILE SEQRES 13 A 276 ASP PHE SER TYR LEU LEU SER LYS VAL GLU GLU LYS VAL SEQRES 14 A 276 GLY SER PRO GLU ARG PRO LEU SER ASP LEU GLY LEU ILE SEQRES 15 A 276 SER TYR ARG SER TYR TRP LYS GLU VAL LEU LEU ARG TYR SEQRES 16 A 276 LEU HIS ASN PHE GLN GLY LYS GLU ILE SER ILE LYS GLU SEQRES 17 A 276 ILE SER GLN GLU THR ALA VAL ASN PRO VAL ASP ILE VAL SEQRES 18 A 276 SER THR LEU GLN ALA LEU GLN MET LEU LYS TYR TRP LYS SEQRES 19 A 276 GLY LYS HIS LEU VAL LEU LYS ARG GLN ASP LEU ILE ASP SEQRES 20 A 276 GLU TRP ILE ALA LYS GLU ALA LYS ARG SER ASN SER ASN SEQRES 21 A 276 LYS THR MET ASP PRO SER CYS LEU LYS TRP THR PRO PRO SEQRES 22 A 276 LYS GLY THR SEQRES 1 B 50 LEU THR TYR ALA GLN ALA GLN GLY MET VAL GLU ILE GLU SEQRES 2 B 50 ILE GLU GLY ARG LEU HIS ARG ILE SER ILE PHE ASP PRO SEQRES 3 B 50 LEU GLU ILE ILE LEU GLU ASP ASP LEU THR ALA GLN GLU SEQRES 4 B 50 MET SER GLU CYS ASN SER ASN LYS GLU ASN SER MODRES 7D0S ALY A 432 LYS MODIFIED RESIDUE HET ALY A 432 12 HET SCA A 701 55 HET ZN A 702 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM SCA SUCCINYL-COENZYME A HETNAM ZN ZINC ION FORMUL 1 ALY C8 H16 N2 O3 FORMUL 3 SCA C25 H40 N7 O19 P3 S FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *11(H2 O) HELIX 1 AA1 PRO A 356 ARG A 361 1 6 HELIX 2 AA2 SER A 377 CYS A 388 1 12 HELIX 3 AA3 ASN A 414 LEU A 427 1 14 HELIX 4 AA4 PRO A 479 MET A 482 5 4 HELIX 5 AA5 GLY A 485 GLU A 502 1 18 HELIX 6 AA6 SER A 512 PHE A 534 1 23 HELIX 7 AA7 SER A 540 ALA A 549 1 10 HELIX 8 AA8 ASN A 551 LEU A 562 1 12 HELIX 9 AA9 ARG A 577 SER A 594 1 18 HELIX 10 AB1 ASP A 599 LEU A 603 5 5 SHEET 1 AA1 4 TYR A 345 ASP A 348 0 SHEET 2 AA1 4 THR A 339 PHE A 342 -1 N PHE A 342 O TYR A 345 SHEET 3 AA1 4 ARG A 364 MET A 367 1 O LEU A 365 N ALA A 341 SHEET 4 AA1 4 TYR A 374 MET A 375 -1 O MET A 375 N TYR A 366 SHEET 1 AA2 5 ASP A 396 LYS A 401 0 SHEET 2 AA2 5 ILE A 404 ASP A 410 -1 O GLU A 408 N ASP A 396 SHEET 3 AA2 5 PHE A 441 ASP A 450 -1 O VAL A 445 N PHE A 407 SHEET 4 AA2 5 GLY A 453 GLU A 463 -1 O PHE A 460 N TYR A 444 SHEET 5 AA2 5 CYS A 474 THR A 477 -1 O LEU A 476 N TYR A 459 SHEET 1 AA3 2 TYR A 470 VAL A 472 0 SHEET 2 AA3 2 SER A 506 PRO A 507 1 O SER A 506 N ASN A 471 SHEET 1 AA4 4 GLU A 538 ILE A 539 0 SHEET 2 AA4 4 LEU B 57 ILE B 60 -1 O LEU B 57 N ILE A 539 SHEET 3 AA4 4 LYS A 571 LEU A 575 1 N VAL A 574 O GLU B 58 SHEET 4 AA4 4 LEU A 565 TRP A 568 -1 N LYS A 566 O LEU A 573 SHEET 1 AA5 2 MET B 39 GLU B 41 0 SHEET 2 AA5 2 ARG B 50 SER B 52 -1 O ILE B 51 N VAL B 40 LINK C HIS A 431 N ALY A 432 1555 1555 1.33 LINK C ALY A 432 N THR A 433 1555 1555 1.32 LINK SG CYS A 368 ZN ZN A 702 1555 1555 2.44 LINK SG CYS A 371 ZN ZN A 702 1555 1555 2.28 LINK NE2 HIS A 384 ZN ZN A 702 1555 1555 1.91 LINK SG CYS A 388 ZN ZN A 702 1555 1555 2.11 CISPEP 1 ARG A 509 PRO A 510 0 4.76 CRYST1 127.098 39.565 88.328 90.00 122.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007868 0.000000 0.005087 0.00000 SCALE2 0.000000 0.025275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013482 0.00000