data_7D0Z # _entry.id 7D0Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7D0Z pdb_00007d0z 10.2210/pdb7d0z/pdb WWPDB D_1300018283 ? ? BMRB 36380 ? 10.13018/BMR36380 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-02-03 2 'Structure model' 1 1 2021-02-10 3 'Structure model' 1 2 2021-04-28 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 3 'Structure model' '_citation.title' 8 3 'Structure model' '_citation_author.identifier_ORCID' 9 4 'Structure model' '_database_2.pdbx_DOI' 10 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7D0Z _pdbx_database_status.recvd_initial_deposition_date 2020-09-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR solution structures of the DNA minidumbbell formed by two CCTG repeats at pH 5' _pdbx_database_related.db_id 36380 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guo, P.' 1 0000-0001-7760-5786 'Lam, S.L.' 2 0000-0001-5368-706X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 6740 _citation.page_last 6747 _citation.title '5-Methylcytosine Substantially Enhances the Thermal Stability of DNA Minidumbbells.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.202005410 _citation.pdbx_database_id_PubMed 33501691 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wan, L.' 1 0000-0003-3663-2678 primary 'Yi, J.' 2 ? primary 'Lam, S.L.' 3 0000-0001-5368-706X primary 'Lee, H.K.' 4 0000-0002-2052-4069 primary 'Guo, P.' 5 0000-0001-7760-5786 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(DCZ)P*CP*TP*GP*CP*CP*TP*G)-3') ; 2298.587 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DCZ)(DC)(DT)(DG)(DC)(DC)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can XCTGCCTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DCZ n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DCZ 'DNA OH 5 prime terminus' . "2'-DEOXYCYTIDINE" ? 'C9 H13 N3 O4' 227.217 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DCZ 1 1 1 DCZ CP5 A . n A 1 2 DC 2 2 2 DC DCP A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 9 NA NA A . C 2 NA 1 102 10 NA NA A . D 2 NA 1 103 11 NA NA A . E 2 NA 1 104 12 NA NA A . F 2 NA 1 105 13 NA NA A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D0Z _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7D0Z _struct.title 'NMR solution structures of the DNA minidumbbell formed by two CCTG repeats at pH 5' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D0Z _struct_keywords.text 'minidumbbell, CCTG, pH 5, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7D0Z _struct_ref.pdbx_db_accession 7D0Z _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7D0Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7D0Z _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1000 ? 1 MORE -46 ? 1 'SSA (A^2)' 1490 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DCZ 1 "O3'" ? ? ? 1_555 A DC 2 P ? ? A DCZ 1 A DC 2 1_555 ? ? ? ? ? ? ? 1.613 ? ? metalc1 metalc ? ? A DC 2 OP1 ? ? ? 1_555 F NA . NA ? ? A DC 2 A NA 105 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc2 metalc ? ? A DC 2 OP2 ? ? ? 1_555 F NA . NA ? ? A DC 2 A NA 105 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc3 metalc ? ? A DG 4 OP1 ? ? ? 1_555 C NA . NA ? ? A DG 4 A NA 102 1_555 ? ? ? ? ? ? ? 2.382 ? ? metalc4 metalc ? ? A DG 4 OP2 ? ? ? 1_555 C NA . NA ? ? A DG 4 A NA 102 1_555 ? ? ? ? ? ? ? 2.665 ? ? metalc5 metalc ? ? A DC 5 OP1 ? ? ? 1_555 B NA . NA ? ? A DC 5 A NA 101 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc6 metalc ? ? A DC 5 "O5'" ? ? ? 1_555 B NA . NA ? ? A DC 5 A NA 101 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc7 metalc ? ? A DC 5 "O3'" ? ? ? 1_555 B NA . NA ? ? A DC 5 A NA 101 1_555 ? ? ? ? ? ? ? 2.586 ? ? metalc8 metalc ? ? A DC 5 OP2 ? ? ? 1_555 C NA . NA ? ? A DC 5 A NA 102 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc9 metalc ? ? A DC 6 OP1 ? ? ? 1_555 B NA . NA ? ? A DC 6 A NA 101 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc10 metalc ? ? A DT 7 OP1 ? ? ? 1_555 D NA . NA ? ? A DT 7 A NA 103 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc11 metalc ? ? A DT 7 "O3'" ? ? ? 1_555 E NA . NA ? ? A DT 7 A NA 104 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc12 metalc ? ? A DG 8 OP1 ? ? ? 1_555 D NA . NA ? ? A DG 8 A NA 103 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc13 metalc ? ? A DG 8 OP2 ? ? ? 1_555 E NA . NA ? ? A DG 8 A NA 104 1_555 ? ? ? ? ? ? ? 2.400 ? ? hydrog1 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DC 6 O2 ? ? A DC 2 A DC 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog2 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DC 6 N4 ? ? A DC 2 A DC 6 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog3 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 2 ? A DC 2 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A DC 2 ? A DC 2 ? 1_555 63.0 ? 2 OP1 ? A DG 4 ? A DG 4 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DG 4 ? A DG 4 ? 1_555 59.6 ? 3 OP1 ? A DG 4 ? A DG 4 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DC 5 ? A DC 5 ? 1_555 111.7 ? 4 OP2 ? A DG 4 ? A DG 4 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DC 5 ? A DC 5 ? 1_555 134.4 ? 5 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 "O5'" ? A DC 5 ? A DC 5 ? 1_555 58.3 ? 6 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 "O3'" ? A DC 5 ? A DC 5 ? 1_555 125.6 ? 7 "O5'" ? A DC 5 ? A DC 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 "O3'" ? A DC 5 ? A DC 5 ? 1_555 78.4 ? 8 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A DC 6 ? A DC 6 ? 1_555 161.0 ? 9 "O5'" ? A DC 5 ? A DC 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A DC 6 ? A DC 6 ? 1_555 134.8 ? 10 "O3'" ? A DC 5 ? A DC 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A DC 6 ? A DC 6 ? 1_555 58.5 ? 11 OP1 ? A DT 7 ? A DT 7 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP1 ? A DG 8 ? A DG 8 ? 1_555 141.5 ? 12 "O3'" ? A DT 7 ? A DT 7 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP2 ? A DG 8 ? A DG 8 ? 1_555 60.3 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.54 108.30 4.24 0.30 N 2 1 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 101.93 110.10 -8.17 1.00 N 3 1 N1 A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 122.91 114.30 8.61 1.40 N 4 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.08 108.30 2.78 0.30 N 5 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.73 108.30 5.43 0.30 N 6 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.62 118.00 3.62 0.60 N 7 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.23 122.90 -6.67 0.60 N 8 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.93 108.30 4.63 0.30 N 9 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.43 108.30 5.13 0.30 N 10 2 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.55 128.60 -3.05 0.50 N 11 2 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DC 6 ? ? 127.09 119.70 7.39 1.20 Y 12 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.00 108.30 4.70 0.30 N 13 2 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.75 118.90 3.85 0.60 N 14 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.59 108.30 5.29 0.30 N 15 2 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.88 122.90 -5.02 0.60 N 16 3 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.28 108.30 3.98 0.30 N 17 3 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.90 108.30 2.60 0.30 N 18 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.98 108.30 2.68 0.30 N 19 3 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.51 128.60 -3.09 0.50 N 20 3 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.75 110.10 -7.35 1.00 N 21 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.63 108.30 3.33 0.30 N 22 3 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.67 118.90 3.77 0.60 N 23 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.87 108.30 5.57 0.30 N 24 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.99 122.90 -5.91 0.60 N 25 4 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.97 108.30 3.67 0.30 N 26 4 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.34 108.30 4.04 0.30 N 27 4 "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? P A DG 4 ? ? 127.39 119.70 7.69 1.20 Y 28 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.65 108.30 3.35 0.30 N 29 4 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.44 128.60 -3.16 0.50 N 30 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.04 108.30 5.74 0.30 N 31 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.11 108.30 3.81 0.30 N 32 4 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.73 118.90 3.83 0.60 N 33 4 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.08 119.70 7.38 1.20 Y 34 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.75 108.30 2.45 0.30 N 35 4 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.63 118.00 3.63 0.60 N 36 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.89 122.90 -6.01 0.60 N 37 5 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.56 108.30 4.26 0.30 N 38 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.10 108.30 4.80 0.30 N 39 5 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.27 128.60 -3.33 0.50 N 40 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.64 108.30 3.34 0.30 N 41 5 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.52 118.90 3.62 0.60 N 42 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.46 108.30 4.16 0.30 N 43 5 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.89 118.00 3.89 0.60 N 44 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.81 122.90 -6.09 0.60 N 45 6 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.75 108.30 4.45 0.30 N 46 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.29 108.30 4.99 0.30 N 47 6 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.12 128.60 -3.48 0.50 N 48 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.05 108.30 2.75 0.30 N 49 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.69 108.30 3.39 0.30 N 50 6 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.66 118.90 3.76 0.60 N 51 6 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.06 119.70 7.36 1.20 Y 52 6 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.62 118.00 3.62 0.60 N 53 6 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.40 122.90 -6.50 0.60 N 54 7 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.52 108.30 4.22 0.30 N 55 7 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.16 108.30 2.86 0.30 N 56 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.40 108.30 3.10 0.30 N 57 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.45 108.30 5.15 0.30 N 58 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.25 108.30 3.95 0.30 N 59 7 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.51 118.90 3.61 0.60 N 60 7 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.15 119.70 7.45 1.20 Y 61 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.00 108.30 2.70 0.30 N 62 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.14 122.90 -5.76 0.60 N 63 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.67 108.30 2.37 0.30 N 64 8 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.10 108.30 4.80 0.30 N 65 8 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.95 108.30 2.65 0.30 N 66 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.56 108.30 5.26 0.30 N 67 8 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.27 128.60 -3.33 0.50 N 68 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.56 108.30 2.26 0.30 N 69 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.37 108.30 4.07 0.30 N 70 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.45 108.30 5.15 0.30 N 71 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.83 122.90 -5.07 0.60 N 72 9 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.68 108.30 4.38 0.30 N 73 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.87 108.30 2.57 0.30 N 74 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.80 108.30 4.50 0.30 N 75 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.34 108.30 5.04 0.30 N 76 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.39 122.90 -6.51 0.60 N 77 10 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.08 108.30 3.78 0.30 N 78 10 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.49 108.30 3.19 0.30 N 79 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.33 108.30 5.03 0.30 N 80 10 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.30 128.60 -3.30 0.50 N 81 10 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 102.50 110.10 -7.60 1.00 N 82 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.08 108.30 3.78 0.30 N 83 10 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.54 118.90 3.64 0.60 N 84 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.98 108.30 3.68 0.30 N 85 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.40 122.90 -6.50 0.60 N 86 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.43 108.30 2.13 0.30 N 87 11 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.70 108.30 4.40 0.30 N 88 11 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.63 108.30 4.33 0.30 N 89 11 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.54 128.60 -3.06 0.50 N 90 11 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.10 108.30 4.80 0.30 N 91 11 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.14 108.30 3.84 0.30 N 92 11 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.53 118.90 3.63 0.60 N 93 11 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.16 108.30 3.86 0.30 N 94 11 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 115.88 122.90 -7.02 0.60 N 95 11 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.31 108.30 3.01 0.30 N 96 12 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.70 108.30 4.40 0.30 N 97 12 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.10 108.30 2.80 0.30 N 98 12 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.64 108.30 4.34 0.30 N 99 12 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.55 128.60 -3.05 0.50 N 100 12 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.11 108.30 3.81 0.30 N 101 12 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.59 108.30 3.29 0.30 N 102 12 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.52 108.30 5.22 0.30 N 103 12 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.65 118.00 3.65 0.60 N 104 12 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.51 122.90 -5.39 0.60 N 105 12 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.78 108.30 3.48 0.30 N 106 13 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.70 108.30 5.40 0.30 N 107 13 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.51 108.30 4.21 0.30 N 108 13 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.90 108.30 3.60 0.30 N 109 13 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 104.09 110.10 -6.01 1.00 N 110 13 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.05 108.30 4.75 0.30 N 111 13 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.02 108.30 4.72 0.30 N 112 13 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 128.61 119.70 8.91 1.20 Y 113 13 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.45 108.30 4.15 0.30 N 114 13 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.76 122.90 -6.14 0.60 N 115 13 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.93 108.30 2.63 0.30 N 116 14 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.55 108.30 4.25 0.30 N 117 14 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.30 108.30 3.00 0.30 N 118 14 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.73 108.30 2.43 0.30 N 119 14 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.11 108.30 4.81 0.30 N 120 14 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.96 108.30 4.66 0.30 N 121 14 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.81 119.70 8.11 1.20 Y 122 14 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.59 108.30 5.29 0.30 N 123 14 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.67 118.00 3.67 0.60 N 124 14 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.42 122.90 -5.48 0.60 N 125 14 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.25 108.30 1.95 0.30 N 126 15 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.96 108.30 3.66 0.30 N 127 15 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.64 108.30 3.34 0.30 N 128 15 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.59 128.60 -3.01 0.50 N 129 15 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.26 108.30 1.96 0.30 N 130 15 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.16 108.30 3.86 0.30 N 131 15 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.54 118.90 3.64 0.60 N 132 15 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 114.40 108.30 6.10 0.30 N 133 15 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.61 118.00 3.61 0.60 N 134 15 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.84 122.90 -5.06 0.60 N 135 15 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.79 108.30 3.49 0.30 N 136 16 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.58 108.30 5.28 0.30 N 137 16 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.80 108.30 2.50 0.30 N 138 16 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.49 108.30 2.19 0.30 N 139 16 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.93 108.30 3.63 0.30 N 140 16 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.63 108.30 2.33 0.30 N 141 16 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.74 108.30 4.44 0.30 N 142 16 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.70 118.00 3.70 0.60 N 143 16 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.07 122.90 -5.83 0.60 N 144 16 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.35 108.30 4.05 0.30 N 145 17 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 113.45 108.30 5.15 0.30 N 146 17 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DT 3 ? ? 127.03 119.70 7.33 1.20 Y 147 17 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.99 108.30 2.69 0.30 N 148 17 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.47 108.30 5.17 0.30 N 149 17 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.05 108.30 3.75 0.30 N 150 17 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.79 108.30 3.49 0.30 N 151 17 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.63 118.00 3.63 0.60 N 152 17 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.85 122.90 -6.05 0.60 N 153 18 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.00 108.30 3.70 0.30 N 154 18 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.89 108.30 3.59 0.30 N 155 18 "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? P A DG 4 ? ? 127.06 119.70 7.36 1.20 Y 156 18 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.84 108.30 2.54 0.30 N 157 18 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.35 128.60 -3.25 0.50 N 158 18 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.92 108.30 3.62 0.30 N 159 18 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.59 108.30 3.29 0.30 N 160 18 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.45 108.30 3.15 0.30 N 161 18 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 115.66 122.90 -7.24 0.60 N 162 18 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.89 108.30 2.59 0.30 N 163 19 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.44 108.30 4.14 0.30 N 164 19 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.32 108.30 5.02 0.30 N 165 19 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 125.39 128.60 -3.21 0.50 N 166 19 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.38 108.30 4.08 0.30 N 167 19 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.60 118.90 3.70 0.60 N 168 19 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.27 119.70 7.57 1.20 Y 169 19 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.81 108.30 4.51 0.30 N 170 19 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.75 118.00 3.75 0.60 N 171 19 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.35 122.90 -5.55 0.60 N 172 20 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.92 108.30 4.62 0.30 N 173 20 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.85 108.30 2.55 0.30 N 174 20 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.47 108.30 2.17 0.30 N 175 20 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.94 108.30 2.64 0.30 N 176 20 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.35 108.30 3.05 0.30 N 177 20 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.63 118.90 3.73 0.60 N 178 20 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 114.01 108.30 5.71 0.30 N 179 20 C4 A DT 7 ? ? C5 A DT 7 ? ? C6 A DT 7 ? ? 121.65 118.00 3.65 0.60 N 180 20 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.69 122.90 -5.21 0.60 N 181 20 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DG 8 ? ? 129.36 119.70 9.66 1.20 Y 182 20 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.03 108.30 3.73 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 3 ? ? 0.093 'SIDE CHAIN' 2 1 DC A 5 ? ? 0.096 'SIDE CHAIN' 3 1 DC A 6 ? ? 0.058 'SIDE CHAIN' 4 1 DT A 7 ? ? 0.169 'SIDE CHAIN' 5 2 DT A 3 ? ? 0.070 'SIDE CHAIN' 6 2 DG A 4 ? ? 0.068 'SIDE CHAIN' 7 2 DT A 7 ? ? 0.200 'SIDE CHAIN' 8 3 DC A 5 ? ? 0.092 'SIDE CHAIN' 9 3 DT A 7 ? ? 0.212 'SIDE CHAIN' 10 4 DG A 4 ? ? 0.054 'SIDE CHAIN' 11 4 DT A 7 ? ? 0.212 'SIDE CHAIN' 12 4 DG A 8 ? ? 0.066 'SIDE CHAIN' 13 5 DT A 3 ? ? 0.075 'SIDE CHAIN' 14 5 DT A 7 ? ? 0.203 'SIDE CHAIN' 15 6 DT A 3 ? ? 0.077 'SIDE CHAIN' 16 6 DT A 7 ? ? 0.210 'SIDE CHAIN' 17 7 DT A 3 ? ? 0.111 'SIDE CHAIN' 18 7 DT A 7 ? ? 0.223 'SIDE CHAIN' 19 8 DG A 4 ? ? 0.074 'SIDE CHAIN' 20 8 DT A 7 ? ? 0.184 'SIDE CHAIN' 21 9 DT A 3 ? ? 0.142 'SIDE CHAIN' 22 9 DC A 6 ? ? 0.076 'SIDE CHAIN' 23 9 DT A 7 ? ? 0.158 'SIDE CHAIN' 24 10 DC A 5 ? ? 0.117 'SIDE CHAIN' 25 10 DT A 7 ? ? 0.205 'SIDE CHAIN' 26 11 DT A 3 ? ? 0.065 'SIDE CHAIN' 27 11 DG A 4 ? ? 0.086 'SIDE CHAIN' 28 11 DT A 7 ? ? 0.206 'SIDE CHAIN' 29 11 DG A 8 ? ? 0.059 'SIDE CHAIN' 30 12 DT A 3 ? ? 0.070 'SIDE CHAIN' 31 12 DG A 4 ? ? 0.073 'SIDE CHAIN' 32 12 DT A 7 ? ? 0.173 'SIDE CHAIN' 33 13 DT A 3 ? ? 0.105 'SIDE CHAIN' 34 13 DG A 4 ? ? 0.075 'SIDE CHAIN' 35 13 DT A 7 ? ? 0.230 'SIDE CHAIN' 36 14 DT A 3 ? ? 0.080 'SIDE CHAIN' 37 14 DT A 7 ? ? 0.235 'SIDE CHAIN' 38 15 DC A 2 ? ? 0.072 'SIDE CHAIN' 39 15 DT A 3 ? ? 0.062 'SIDE CHAIN' 40 15 DT A 7 ? ? 0.189 'SIDE CHAIN' 41 16 DT A 3 ? ? 0.065 'SIDE CHAIN' 42 16 DT A 7 ? ? 0.210 'SIDE CHAIN' 43 17 DT A 3 ? ? 0.095 'SIDE CHAIN' 44 17 DT A 7 ? ? 0.202 'SIDE CHAIN' 45 18 DT A 7 ? ? 0.166 'SIDE CHAIN' 46 19 DG A 4 ? ? 0.067 'SIDE CHAIN' 47 19 DT A 7 ? ? 0.178 'SIDE CHAIN' 48 19 DG A 8 ? ? 0.068 'SIDE CHAIN' 49 20 DC A 5 ? ? 0.078 'SIDE CHAIN' 50 20 DT A 7 ? ? 0.239 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7D0Z _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details 'DCZ (A 1), DC (A 2) have extra atom H3 as N3-site protonated.' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7D0Z _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7D0Z _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria na # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.2 mM NA DNA (5'-D(*(CP5)P*(DCP)P*TP*GP*CP*CP*TP*G)-3'), 0.02 mM NA DSS, 10 mM NA NaCl, 99.96% D2O ; _pdbx_nmr_sample_details.solvent_system '99.96% D2O' _pdbx_nmr_sample_details.label CCTG_pH5 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*(CP5)P*(DCP)P*TP*GP*CP*CP*TP*G)-3') ; 0.2 ? mM NA 1 DSS 0.02 ? mM NA 1 NaCl 10 ? mM NA # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 273 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 2 isotropic # _pdbx_nmr_refine.entry_id 7D0Z _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' TopSpin ? 'Bruker Biospin' 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DCZ N1 N N N 35 DCZ C2 C N N 36 DCZ N3 N N N 37 DCZ C4 C N N 38 DCZ C5 C N N 39 DCZ C6 C N N 40 DCZ O2 O N N 41 DCZ N4 N N N 42 DCZ "C1'" C N R 43 DCZ "C2'" C N N 44 DCZ "C3'" C N S 45 DCZ "C4'" C N R 46 DCZ "O4'" O N N 47 DCZ "O3'" O N N 48 DCZ "C5'" C N N 49 DCZ "O5'" O N N 50 DCZ H5 H N N 51 DCZ H6 H N N 52 DCZ HN41 H N N 53 DCZ HN42 H N N 54 DCZ "H1'" H N N 55 DCZ "H2'1" H N N 56 DCZ "H2'2" H N N 57 DCZ "H3'" H N N 58 DCZ "H4'" H N N 59 DCZ "HO3'" H N N 60 DCZ "H5'1" H N N 61 DCZ "H5'2" H N N 62 DCZ HO51 H N N 63 DG OP3 O N N 64 DG P P N N 65 DG OP1 O N N 66 DG OP2 O N N 67 DG "O5'" O N N 68 DG "C5'" C N N 69 DG "C4'" C N R 70 DG "O4'" O N N 71 DG "C3'" C N S 72 DG "O3'" O N N 73 DG "C2'" C N N 74 DG "C1'" C N R 75 DG N9 N Y N 76 DG C8 C Y N 77 DG N7 N Y N 78 DG C5 C Y N 79 DG C6 C N N 80 DG O6 O N N 81 DG N1 N N N 82 DG C2 C N N 83 DG N2 N N N 84 DG N3 N N N 85 DG C4 C Y N 86 DG HOP3 H N N 87 DG HOP2 H N N 88 DG "H5'" H N N 89 DG "H5''" H N N 90 DG "H4'" H N N 91 DG "H3'" H N N 92 DG "HO3'" H N N 93 DG "H2'" H N N 94 DG "H2''" H N N 95 DG "H1'" H N N 96 DG H8 H N N 97 DG H1 H N N 98 DG H21 H N N 99 DG H22 H N N 100 DT OP3 O N N 101 DT P P N N 102 DT OP1 O N N 103 DT OP2 O N N 104 DT "O5'" O N N 105 DT "C5'" C N N 106 DT "C4'" C N R 107 DT "O4'" O N N 108 DT "C3'" C N S 109 DT "O3'" O N N 110 DT "C2'" C N N 111 DT "C1'" C N R 112 DT N1 N N N 113 DT C2 C N N 114 DT O2 O N N 115 DT N3 N N N 116 DT C4 C N N 117 DT O4 O N N 118 DT C5 C N N 119 DT C7 C N N 120 DT C6 C N N 121 DT HOP3 H N N 122 DT HOP2 H N N 123 DT "H5'" H N N 124 DT "H5''" H N N 125 DT "H4'" H N N 126 DT "H3'" H N N 127 DT "HO3'" H N N 128 DT "H2'" H N N 129 DT "H2''" H N N 130 DT "H1'" H N N 131 DT H3 H N N 132 DT H71 H N N 133 DT H72 H N N 134 DT H73 H N N 135 DT H6 H N N 136 NA NA NA N N 137 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DCZ N1 C2 sing N N 36 DCZ N1 C6 sing N N 37 DCZ N1 "C1'" sing N N 38 DCZ C2 N3 sing N N 39 DCZ C2 O2 doub N N 40 DCZ N3 C4 doub N N 41 DCZ C4 C5 sing N N 42 DCZ C4 N4 sing N N 43 DCZ C5 C6 doub N N 44 DCZ C5 H5 sing N N 45 DCZ C6 H6 sing N N 46 DCZ N4 HN41 sing N N 47 DCZ N4 HN42 sing N N 48 DCZ "C1'" "C2'" sing N N 49 DCZ "C1'" "O4'" sing N N 50 DCZ "C1'" "H1'" sing N N 51 DCZ "C2'" "C3'" sing N N 52 DCZ "C2'" "H2'1" sing N N 53 DCZ "C2'" "H2'2" sing N N 54 DCZ "C3'" "C4'" sing N N 55 DCZ "C3'" "O3'" sing N N 56 DCZ "C3'" "H3'" sing N N 57 DCZ "C4'" "O4'" sing N N 58 DCZ "C4'" "C5'" sing N N 59 DCZ "C4'" "H4'" sing N N 60 DCZ "O3'" "HO3'" sing N N 61 DCZ "C5'" "O5'" sing N N 62 DCZ "C5'" "H5'1" sing N N 63 DCZ "C5'" "H5'2" sing N N 64 DCZ "O5'" HO51 sing N N 65 DG OP3 P sing N N 66 DG OP3 HOP3 sing N N 67 DG P OP1 doub N N 68 DG P OP2 sing N N 69 DG P "O5'" sing N N 70 DG OP2 HOP2 sing N N 71 DG "O5'" "C5'" sing N N 72 DG "C5'" "C4'" sing N N 73 DG "C5'" "H5'" sing N N 74 DG "C5'" "H5''" sing N N 75 DG "C4'" "O4'" sing N N 76 DG "C4'" "C3'" sing N N 77 DG "C4'" "H4'" sing N N 78 DG "O4'" "C1'" sing N N 79 DG "C3'" "O3'" sing N N 80 DG "C3'" "C2'" sing N N 81 DG "C3'" "H3'" sing N N 82 DG "O3'" "HO3'" sing N N 83 DG "C2'" "C1'" sing N N 84 DG "C2'" "H2'" sing N N 85 DG "C2'" "H2''" sing N N 86 DG "C1'" N9 sing N N 87 DG "C1'" "H1'" sing N N 88 DG N9 C8 sing Y N 89 DG N9 C4 sing Y N 90 DG C8 N7 doub Y N 91 DG C8 H8 sing N N 92 DG N7 C5 sing Y N 93 DG C5 C6 sing N N 94 DG C5 C4 doub Y N 95 DG C6 O6 doub N N 96 DG C6 N1 sing N N 97 DG N1 C2 sing N N 98 DG N1 H1 sing N N 99 DG C2 N2 sing N N 100 DG C2 N3 doub N N 101 DG N2 H21 sing N N 102 DG N2 H22 sing N N 103 DG N3 C4 sing N N 104 DT OP3 P sing N N 105 DT OP3 HOP3 sing N N 106 DT P OP1 doub N N 107 DT P OP2 sing N N 108 DT P "O5'" sing N N 109 DT OP2 HOP2 sing N N 110 DT "O5'" "C5'" sing N N 111 DT "C5'" "C4'" sing N N 112 DT "C5'" "H5'" sing N N 113 DT "C5'" "H5''" sing N N 114 DT "C4'" "O4'" sing N N 115 DT "C4'" "C3'" sing N N 116 DT "C4'" "H4'" sing N N 117 DT "O4'" "C1'" sing N N 118 DT "C3'" "O3'" sing N N 119 DT "C3'" "C2'" sing N N 120 DT "C3'" "H3'" sing N N 121 DT "O3'" "HO3'" sing N N 122 DT "C2'" "C1'" sing N N 123 DT "C2'" "H2'" sing N N 124 DT "C2'" "H2''" sing N N 125 DT "C1'" N1 sing N N 126 DT "C1'" "H1'" sing N N 127 DT N1 C2 sing N N 128 DT N1 C6 sing N N 129 DT C2 O2 doub N N 130 DT C2 N3 sing N N 131 DT N3 C4 sing N N 132 DT N3 H3 sing N N 133 DT C4 O4 doub N N 134 DT C4 C5 sing N N 135 DT C5 C7 sing N N 136 DT C5 C6 doub N N 137 DT C7 H71 sing N N 138 DT C7 H72 sing N N 139 DT C7 H73 sing N N 140 DT C6 H6 sing N N 141 # _ndb_struct_conf_na.entry_id 7D0Z _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DC 6 1_555 1.902 2.249 0.252 -9.789 -31.005 179.803 1 A_DC2:DC6_A A 2 ? A 6 ? 15 2 1 A DG 8 1_555 A DC 5 1_555 -0.203 0.037 0.061 -25.916 -0.070 2.631 2 A_DG8:DC5_A A 8 ? A 5 ? 19 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DC _ndb_struct_na_base_pair_step.i_label_seq_id_1 2 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 DC _ndb_struct_na_base_pair_step.j_label_seq_id_1 6 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DG _ndb_struct_na_base_pair_step.i_label_seq_id_2 8 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DC _ndb_struct_na_base_pair_step.j_label_seq_id_2 5 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift 5.150 _ndb_struct_na_base_pair_step.slide 2.330 _ndb_struct_na_base_pair_step.rise 2.525 _ndb_struct_na_base_pair_step.tilt 27.861 _ndb_struct_na_base_pair_step.roll -61.753 _ndb_struct_na_base_pair_step.twist 55.700 _ndb_struct_na_base_pair_step.x_displacement 2.944 _ndb_struct_na_base_pair_step.y_displacement -3.238 _ndb_struct_na_base_pair_step.helical_rise 1.733 _ndb_struct_na_base_pair_step.inclination -50.285 _ndb_struct_na_base_pair_step.tip -22.687 _ndb_struct_na_base_pair_step.helical_twist 85.537 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DC2DG8:DC5DC6_AA _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 A _ndb_struct_na_base_pair_step.j_auth_seq_id_1 6 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 8 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 A _ndb_struct_na_base_pair_step.j_auth_seq_id_2 5 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id DCZ _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id DCZ _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 700 ? 2 AVANCE ? Bruker 500 ? # _atom_sites.entry_id 7D0Z _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_