HEADER TRANSFERASE 24-SEP-20 7D4J TITLE DDATP COMPLEX OF CYCLIC TRINUCLEOTIDE SYNTHASE CDND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC AMP-AMP-GMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CGAS/DNCV-LIKE NUCLEOTIDYLTRANSFERASE,CD-NTASE; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: CDND02, P853_02262; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SUBSTRATE ANALOGUE DIDEOXY ADENOSINE TRIPHOSPHATE CYCLIC KEYWDS 2 TRINUCLEOTIDE SYNTHESIS NUCLEOTIDYL TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-S.YANG,M.-H.HOU,C.-L.TSAI,Y.-C.WANG,T.-P.KO,Y.CHEN REVDAT 4 29-NOV-23 7D4J 1 REMARK REVDAT 3 19-MAY-21 7D4J 1 JRNL REVDAT 2 21-APR-21 7D4J 1 JRNL REVDAT 1 17-MAR-21 7D4J 0 JRNL AUTH T.P.KO,Y.C.WANG,C.L.TSAI,C.S.YANG,M.H.HOU,Y.CHEN JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL IMPLICATION OF A BACTERIAL JRNL TITL 2 CYCLIC AMP-AMP-GMP SYNTHETASE. JRNL REF NUCLEIC ACIDS RES. V. 49 4725 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33836064 JRNL DOI 10.1093/NAR/GKAB165 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 28906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.1700 - 2.0900 0.58 1636 86 0.2087 0.2418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.195 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2897 REMARK 3 ANGLE : 0.750 3941 REMARK 3 CHIRALITY : 0.044 417 REMARK 3 PLANARITY : 0.005 506 REMARK 3 DIHEDRAL : 17.764 1731 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8783 38.5997 160.2853 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.1284 REMARK 3 T33: 0.0741 T12: 0.0259 REMARK 3 T13: 0.0360 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.0482 L22: 0.4119 REMARK 3 L33: 1.1615 L12: 0.0718 REMARK 3 L13: 0.1065 L23: 0.2471 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.0316 S13: 0.0521 REMARK 3 S21: 0.1499 S22: -0.0140 S23: 0.0048 REMARK 3 S31: 0.0962 S32: 0.1616 S33: -0.1534 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9656 42.5893 152.8052 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.2520 REMARK 3 T33: 0.1975 T12: 0.0218 REMARK 3 T13: 0.0099 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.5777 L22: 0.2882 REMARK 3 L33: 0.6401 L12: -0.1854 REMARK 3 L13: -0.0493 L23: -0.0827 REMARK 3 S TENSOR REMARK 3 S11: -0.2125 S12: 0.0033 S13: 0.1461 REMARK 3 S21: 0.1410 S22: 0.0136 S23: -0.2271 REMARK 3 S31: -0.2404 S32: 0.4460 S33: -0.1693 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2980 42.8296 134.3581 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0574 REMARK 3 T33: 0.0585 T12: 0.0134 REMARK 3 T13: 0.0122 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.6159 L22: 0.6933 REMARK 3 L33: 0.9561 L12: -0.0214 REMARK 3 L13: 0.4604 L23: -0.3915 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.0569 S13: 0.0397 REMARK 3 S21: -0.1618 S22: -0.1012 S23: 0.0346 REMARK 3 S31: 0.0382 S32: 0.1263 S33: -0.1416 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30653 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB 7D48 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MM DDATP, 10 MM GTP, 10 MM MGCL2, REMARK 280 0.2 M AMMONIUM TARTRATE DIBASIC, PH 7.0, 26% W/V PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 172.87900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.58650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.58650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.43950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.58650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.58650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 259.31850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.58650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.58650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.43950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.58650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.58650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 259.31850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 172.87900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 762 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 167 REMARK 465 THR A 168 REMARK 465 GLY A 169 REMARK 465 LEU A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 SER A 174 REMARK 465 ASN A 175 REMARK 465 SER A 176 REMARK 465 ALA A 177 REMARK 465 PRO A 356 REMARK 465 GLN A 357 REMARK 465 GLY A 358 REMARK 465 GLY A 359 REMARK 465 ASP A 360 REMARK 465 ARG A 361 REMARK 465 ASN A 362 REMARK 465 GLY A 363 REMARK 465 GLY A 364 REMARK 465 PHE A 365 REMARK 465 THR A 366 REMARK 465 THR A 367 REMARK 465 PRO A 368 REMARK 465 SER A 369 REMARK 465 LYS A 370 REMARK 465 PRO A 371 REMARK 465 ALA A 372 REMARK 465 GLU A 373 REMARK 465 PRO A 374 REMARK 465 GLN A 375 REMARK 465 LYS A 376 REMARK 465 THR A 377 REMARK 465 GLY A 378 REMARK 465 ARG A 379 REMARK 465 PHE A 380 REMARK 465 ALA A 381 REMARK 465 LEU A 382 REMARK 465 GLU A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 170 N CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3G DDS A 401 O HOH A 501 2.12 REMARK 500 O HOH A 530 O HOH A 819 2.13 REMARK 500 OD1 ASN A 200 O HOH A 502 2.17 REMARK 500 OE2 GLU A 97 O HOH A 503 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 187 -20.52 -140.81 REMARK 500 HIS A 190 71.14 -119.43 REMARK 500 SER A 290 -164.21 -113.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 866 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 868 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 869 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 870 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 871 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 872 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 873 DISTANCE = 6.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD2 REMARK 620 2 DDS A 401 O2A 85.8 REMARK 620 3 DDS A 401 O2B 99.7 82.6 REMARK 620 4 DDS A 401 O2G 177.1 93.8 77.4 REMARK 620 5 HOH A 673 O 98.1 170.8 88.5 81.8 REMARK 620 6 HOH A 728 O 93.0 88.0 163.5 89.9 100.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 258 O REMARK 620 2 LEU A 260 O 102.8 REMARK 620 3 HOH A 532 O 81.2 93.7 REMARK 620 4 HOH A 549 O 91.5 83.3 171.3 REMARK 620 5 HOH A 757 O 77.8 174.9 91.4 91.6 REMARK 620 6 HOH A 778 O 168.7 87.2 103.6 84.5 91.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7D48 RELATED DB: PDB REMARK 900 7D48 IS THE APO-FORM REMARK 900 RELATED ID: 7D4O RELATED DB: PDB REMARK 900 RELATED ID: 7D4S RELATED DB: PDB REMARK 900 RELATED ID: 7D4U RELATED DB: PDB DBREF 7D4J A 1 381 UNP P0DSP4 CDND2_ENTCL 1 381 SEQADV 7D4J LEU A 382 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4J GLU A 383 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4J HIS A 384 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4J HIS A 385 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4J HIS A 386 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4J HIS A 387 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4J HIS A 388 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4J HIS A 389 UNP P0DSP4 EXPRESSION TAG SEQRES 1 A 389 MET GLU LEU GLN PRO GLN PHE ASN GLU PHE LEU ALA ASN SEQRES 2 A 389 ILE ARG PRO THR ASP THR GLN LYS GLU ASP TRP LYS SER SEQRES 3 A 389 GLY ALA ARG THR LEU ARG GLU ARG LEU LYS ASN PHE GLU SEQRES 4 A 389 PRO LEU LYS GLU ILE VAL VAL SER THR PHE LEU GLN GLY SEQRES 5 A 389 SER ILE ARG ARG SER THR ALA ILE ARG PRO LEU GLY ASP SEQRES 6 A 389 LYS ARG PRO ASP VAL ASP ILE VAL VAL VAL THR ASN LEU SEQRES 7 A 389 ASP HIS THR ARG MET SER PRO THR ASP ALA MET ASP LEU SEQRES 8 A 389 PHE ILE PRO PHE LEU GLU LYS TYR TYR PRO GLY LYS TRP SEQRES 9 A 389 GLU THR GLN GLY ARG SER PHE GLY ILE THR LEU SER TYR SEQRES 10 A 389 VAL GLU LEU ASP LEU VAL ILE THR ALA ILE PRO GLU SER SEQRES 11 A 389 GLY ALA GLU LYS SER HIS LEU GLU GLN LEU TYR LYS SER SEQRES 12 A 389 GLU SER VAL LEU THR VAL ASN SER LEU GLU GLU GLN THR SEQRES 13 A 389 ASP TRP ARG LEU ASN LYS SER TRP THR PRO ASN THR GLY SEQRES 14 A 389 TRP LEU SER GLU SER ASN SER ALA GLN VAL GLU ASP ALA SEQRES 15 A 389 PRO ALA SER GLU TRP LYS ALA HIS PRO LEU VAL LEU PRO SEQRES 16 A 389 ASP ARG GLU LYS ASN GLU TRP GLY ARG THR HIS PRO LEU SEQRES 17 A 389 ALA GLN ILE ARG TRP THR ALA GLU LYS ASN ARG LEU CYS SEQRES 18 A 389 ASN GLY HIS TYR ILE ASN LEU VAL ARG ALA VAL LYS TRP SEQRES 19 A 389 TRP ARG GLN GLN ASN SER GLU ASP LEU PRO LYS TYR PRO SEQRES 20 A 389 LYS GLY TYR PRO LEU GLU HIS LEU ILE GLY ASN ALA LEU SEQRES 21 A 389 ASP ASN GLY THR THR SER MET ALA GLN GLY LEU VAL GLN SEQRES 22 A 389 LEU MET ASP THR PHE LEU SER ARG TRP ALA ALA ILE TYR SEQRES 23 A 389 ASN GLN LYS SER LYS PRO TRP LEU SER ASP HIS GLY VAL SEQRES 24 A 389 ALA GLU HIS ASP VAL MET ALA ARG LEU THR ALA GLU ASP SEQRES 25 A 389 PHE CYS SER PHE TYR GLU GLY ILE ALA SER ALA ALA GLU SEQRES 26 A 389 ILE ALA ARG ASN ALA LEU ALA SER GLU GLU PRO GLN GLU SEQRES 27 A 389 SER ALA GLN LEU TRP ARG GLN LEU PHE GLY SER LYS PHE SEQRES 28 A 389 PRO LEU PRO GLY PRO GLN GLY GLY ASP ARG ASN GLY GLY SEQRES 29 A 389 PHE THR THR PRO SER LYS PRO ALA GLU PRO GLN LYS THR SEQRES 30 A 389 GLY ARG PHE ALA LEU GLU HIS HIS HIS HIS HIS HIS HET DDS A 401 29 HET MG A 402 1 HET MG A 403 1 HETNAM DDS 2',3'-DIDEOXYADENOSINE TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 DDS C10 H16 N5 O11 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *373(H2 O) HELIX 1 AA1 LEU A 3 ARG A 15 1 13 HELIX 2 AA2 THR A 17 PHE A 38 1 22 HELIX 3 AA3 GLU A 39 LYS A 42 5 4 HELIX 4 AA4 SER A 84 LEU A 91 1 8 HELIX 5 AA5 PHE A 92 TYR A 100 1 9 HELIX 6 AA6 SER A 130 LYS A 142 1 13 HELIX 7 AA7 SER A 143 THR A 148 1 6 HELIX 8 AA8 SER A 151 GLN A 155 5 5 HELIX 9 AA9 PRO A 183 TRP A 187 5 5 HELIX 10 AB1 HIS A 206 CYS A 221 1 16 HELIX 11 AB2 GLY A 223 ASN A 239 1 17 HELIX 12 AB3 SER A 240 LEU A 243 5 4 HELIX 13 AB4 LYS A 248 LEU A 260 1 13 HELIX 14 AB5 SER A 266 TRP A 282 1 17 HELIX 15 AB6 TRP A 282 GLN A 288 1 7 HELIX 16 AB7 THR A 309 SER A 333 1 25 HELIX 17 AB8 GLU A 335 GLY A 348 1 14 SHEET 1 AA1 5 VAL A 45 GLN A 51 0 SHEET 2 AA1 5 ASP A 69 THR A 76 -1 O ASP A 71 N GLN A 51 SHEET 3 AA1 5 GLU A 119 ALA A 126 1 O ASP A 121 N ILE A 72 SHEET 4 AA1 5 PHE A 111 THR A 114 -1 N ILE A 113 O LEU A 120 SHEET 5 AA1 5 TRP A 104 THR A 106 -1 N GLU A 105 O GLY A 112 SHEET 1 AA2 2 LEU A 192 ASP A 196 0 SHEET 2 AA2 2 GLU A 201 THR A 205 -1 O GLY A 203 N LEU A 194 LINK OD2 ASP A 71 MG MG A 402 1555 1555 2.53 LINK O ASN A 258 MG MG A 403 1555 1555 2.58 LINK O LEU A 260 MG MG A 403 1555 1555 2.59 LINK O2A DDS A 401 MG MG A 402 1555 1555 2.08 LINK O2B DDS A 401 MG MG A 402 1555 1555 2.01 LINK O2G DDS A 401 MG MG A 402 1555 1555 2.27 LINK MG MG A 402 O HOH A 673 1555 1555 2.14 LINK MG MG A 402 O HOH A 728 1555 1555 2.47 LINK MG MG A 403 O HOH A 532 1555 1555 2.44 LINK MG MG A 403 O HOH A 549 1555 1555 2.56 LINK MG MG A 403 O HOH A 757 1555 1555 2.45 LINK MG MG A 403 O HOH A 778 1555 1555 2.82 CISPEP 1 TYR A 246 PRO A 247 0 7.16 CRYST1 53.173 53.173 345.758 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002892 0.00000