HEADER FLAVOPROTEIN 24-SEP-20 7D4M TITLE CRYSTAL STRUCTURE OF TMM FROM STRAIN HTCC7211 SOAKED WITH DMS FOR 5 TITLE 2 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN-CONTAINING MONOOXYGENASE FMO; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRIMETHYLAMINE MONOOXYGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS PELAGIBACTER SP. HTCC7211; SOURCE 3 ORGANISM_TAXID: 439493; SOURCE 4 GENE: PB7211_242; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRIMETHYLAMINE MONOOXYGENASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.LI,Y.Z.ZHANG REVDAT 3 29-NOV-23 7D4M 1 REMARK REVDAT 2 16-FEB-22 7D4M 1 JRNL REVDAT 1 15-SEP-21 7D4M 0 JRNL AUTH X.J.WANG,N.ZHANG,Z.J.TENG,P.WANG,W.P.ZHANG,X.L.CHEN, JRNL AUTH 2 Y.Z.ZHANG,Y.CHEN,H.H.FU,C.Y.LI JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO DIMETHYLSULFOXIDE JRNL TITL 2 FORMATION THROUGH DIMETHYLSULFIDE OXIDATION. JRNL REF FRONT MICROBIOL V. 12 35793 2021 JRNL REFN ESSN 1664-302X JRNL PMID 34630359 JRNL DOI 10.3389/FMICB.2021.735793 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 97273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 4733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1710 - 5.5462 0.94 3125 180 0.1805 0.1859 REMARK 3 2 5.5462 - 4.4035 0.95 3126 159 0.1417 0.1338 REMARK 3 3 4.4035 - 3.8472 0.96 3108 161 0.1393 0.1455 REMARK 3 4 3.8472 - 3.4956 0.97 3158 185 0.1546 0.1683 REMARK 3 5 3.4956 - 3.2452 0.99 3226 142 0.1638 0.1809 REMARK 3 6 3.2452 - 3.0539 0.95 3107 164 0.1689 0.1656 REMARK 3 7 3.0539 - 2.9010 0.94 3015 161 0.1717 0.1803 REMARK 3 8 2.9010 - 2.7747 0.99 3212 156 0.1717 0.1994 REMARK 3 9 2.7747 - 2.6679 0.99 3231 163 0.1650 0.1965 REMARK 3 10 2.6679 - 2.5759 0.99 3205 160 0.1666 0.2126 REMARK 3 11 2.5759 - 2.4953 0.99 3184 161 0.1712 0.2064 REMARK 3 12 2.4953 - 2.4240 0.99 3210 154 0.1702 0.1945 REMARK 3 13 2.4240 - 2.3602 0.98 3147 190 0.1632 0.1869 REMARK 3 14 2.3602 - 2.3026 0.98 3206 157 0.1626 0.2061 REMARK 3 15 2.3026 - 2.2503 0.99 3193 170 0.1697 0.1889 REMARK 3 16 2.2503 - 2.2024 0.98 3143 180 0.1654 0.1877 REMARK 3 17 2.2024 - 2.1583 0.98 3170 153 0.1587 0.2074 REMARK 3 18 2.1583 - 2.1176 0.90 2956 144 0.1663 0.1892 REMARK 3 19 2.1176 - 2.0798 0.96 3061 186 0.1676 0.2124 REMARK 3 20 2.0798 - 2.0445 0.97 3121 154 0.1628 0.2059 REMARK 3 21 2.0445 - 2.0116 0.97 3161 164 0.1603 0.1963 REMARK 3 22 2.0116 - 1.9806 0.97 3137 138 0.1592 0.1927 REMARK 3 23 1.9806 - 1.9515 0.97 3129 156 0.1652 0.1881 REMARK 3 24 1.9515 - 1.9240 0.96 3121 156 0.1576 0.2215 REMARK 3 25 1.9240 - 1.8980 0.96 3090 159 0.1612 0.2099 REMARK 3 26 1.8980 - 1.8733 0.96 3088 148 0.1621 0.1912 REMARK 3 27 1.8733 - 1.8499 0.95 3035 141 0.1700 0.2067 REMARK 3 28 1.8499 - 1.8276 0.94 3087 171 0.1740 0.2297 REMARK 3 29 1.8276 - 1.8064 0.94 3057 141 0.1861 0.2230 REMARK 3 30 1.8064 - 1.7861 0.54 1731 79 0.2016 0.2305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 31.41 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.93890 REMARK 3 B22 (A**2) : -4.78210 REMARK 3 B33 (A**2) : -7.15680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.65430 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7772 REMARK 3 ANGLE : 1.158 10547 REMARK 3 CHIRALITY : 0.078 1063 REMARK 3 PLANARITY : 0.005 1330 REMARK 3 DIHEDRAL : 17.165 3069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D4M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98586 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.786 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5IPY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE TRIBASIC, 0.1 M REMARK 280 IMIDAZOLE (PH 7.0) AND 20% (W/V) POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHER 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.91850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 443 REMARK 465 ARG B 444 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 41 O HOH A 601 1.51 REMARK 500 OE2 GLU B 357 O HOH B 601 1.78 REMARK 500 OE2 GLU A 357 O HOH A 602 1.84 REMARK 500 OG SER B 41 O HOH B 602 1.91 REMARK 500 O HOH A 727 O HOH A 1027 1.95 REMARK 500 O HOH A 1041 O HOH A 1057 1.95 REMARK 500 O HOH A 817 O HOH A 1046 1.97 REMARK 500 O HOH B 718 O HOH B 905 2.03 REMARK 500 O HOH B 996 O HOH B 1022 2.03 REMARK 500 CB ASN B 442 O HOH B 983 2.04 REMARK 500 OD1 ASN B 127 O HOH B 603 2.05 REMARK 500 O HOH B 862 O HOH B 891 2.06 REMARK 500 O HOH B 853 O HOH B 1079 2.06 REMARK 500 O HOH B 743 O HOH B 1030 2.08 REMARK 500 O HOH B 687 O HOH B 1017 2.10 REMARK 500 O HOH B 1037 O HOH B 1075 2.10 REMARK 500 O HOH A 640 O HOH A 682 2.12 REMARK 500 OE2 GLU B 357 O HOH B 604 2.12 REMARK 500 O HOH A 802 O HOH A 905 2.13 REMARK 500 O HOH A 1012 O HOH A 1113 2.13 REMARK 500 O HOH B 640 O HOH B 998 2.14 REMARK 500 OE2 GLU A 28 O HOH A 603 2.18 REMARK 500 O HOH B 1000 O HOH B 1004 2.18 REMARK 500 O HOH B 701 O HOH B 1014 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 122 CA - C - O ANGL. DEV. = 16.9 DEGREES REMARK 500 ASN A 122 CA - C - O ANGL. DEV. = 19.2 DEGREES REMARK 500 ASN A 122 CA - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 ASN A 122 CA - C - N ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP A 303 CA - C - O ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP A 303 CA - C - O ANGL. DEV. = 13.3 DEGREES REMARK 500 ASP B 303 C - N - CA ANGL. DEV. = 20.3 DEGREES REMARK 500 ASP B 303 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP B 303 CA - C - O ANGL. DEV. = 15.0 DEGREES REMARK 500 ASP B 303 CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 83 83.20 -165.19 REMARK 500 ASN A 122 39.81 34.05 REMARK 500 ASN A 122 44.16 28.48 REMARK 500 HIS A 161 26.86 -149.08 REMARK 500 ARG A 187 -70.11 -128.33 REMARK 500 SER A 203 -159.97 -123.92 REMARK 500 HIS A 227 -65.93 -109.82 REMARK 500 TYR A 243 107.37 66.26 REMARK 500 CYS A 268 63.30 -100.62 REMARK 500 TYR A 291 80.97 -155.31 REMARK 500 VAL A 299 -52.06 -131.03 REMARK 500 PHE A 316 -67.30 -98.05 REMARK 500 THR A 318 -84.12 -129.82 REMARK 500 ASP A 404 105.36 -160.92 REMARK 500 TYR B 83 83.25 -166.67 REMARK 500 HIS B 161 27.82 -153.61 REMARK 500 ARG B 187 -50.93 -127.22 REMARK 500 SER B 202 20.28 -140.91 REMARK 500 SER B 203 -158.76 -125.27 REMARK 500 HIS B 227 -66.43 -109.59 REMARK 500 TYR B 243 106.44 67.42 REMARK 500 LYS B 250 38.36 -80.87 REMARK 500 CYS B 268 61.93 -101.06 REMARK 500 TYR B 291 79.78 -154.91 REMARK 500 VAL B 299 -53.30 -132.89 REMARK 500 PHE B 316 -64.99 -99.51 REMARK 500 THR B 318 -86.61 -128.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 502 DBREF 7D4M A 1 444 UNP B6BQB2 B6BQB2_9PROT 1 444 DBREF 7D4M B 1 444 UNP B6BQB2 B6BQB2_9PROT 1 444 SEQADV 7D4M MET A -19 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M GLY A -18 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER A -17 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER A -16 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS A -15 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS A -14 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS A -13 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS A -12 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS A -11 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS A -10 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER A -9 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER A -8 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M GLY A -7 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M LEU A -6 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M VAL A -5 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M PRO A -4 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M ARG A -3 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M GLY A -2 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER A -1 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS A 0 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M MET B -19 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M GLY B -18 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER B -17 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER B -16 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS B -15 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS B -14 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS B -13 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS B -12 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS B -11 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS B -10 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER B -9 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER B -8 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M GLY B -7 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M LEU B -6 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M VAL B -5 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M PRO B -4 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M ARG B -3 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M GLY B -2 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M SER B -1 UNP B6BQB2 EXPRESSION TAG SEQADV 7D4M HIS B 0 UNP B6BQB2 EXPRESSION TAG SEQRES 1 A 464 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 464 LEU VAL PRO ARG GLY SER HIS MET SER LYS VAL ALA ILE SEQRES 3 A 464 ILE GLY ALA GLY PRO CYS GLY LEU SER ILE LEU ARG ALA SEQRES 4 A 464 PHE GLU HIS LEU GLU LYS LYS GLY GLU LYS ILE PRO GLU SEQRES 5 A 464 ILE VAL CYS PHE GLU LYS GLN GLU SER TRP GLY GLY LEU SEQRES 6 A 464 TRP ASN TYR ASN TRP ARG THR GLY SER ASP GLN TYR GLY SEQRES 7 A 464 ASP PRO VAL PRO ASN SER MET TYR ARG TYR LEU TRP SER SEQRES 8 A 464 ASN GLY PRO LYS GLU CYS LEU GLU PHE ALA ASP TYR SER SEQRES 9 A 464 PHE ASP GLN HIS PHE GLY LYS SER ILE PRO SER PHE PRO SEQRES 10 A 464 PRO ARG GLU VAL LEU GLN ASP TYR ILE LEU GLY ARG VAL SEQRES 11 A 464 SER LYS GLY ASN ILE LYS ASN LYS ILE LYS PHE ASN THR SEQRES 12 A 464 ARG VAL ILE ASN THR VAL TYR ARG ASN ASP LYS PHE GLU SEQRES 13 A 464 ILE ASN TYR GLN ASP LYS VAL ASN ASP LYS THR LEU SER SEQRES 14 A 464 ASP THR PHE ASP TYR LEU VAL VAL SER THR GLY HIS PHE SEQRES 15 A 464 SER VAL PRO PHE ILE PRO GLU TYR GLU GLY MET SER SER SEQRES 16 A 464 PHE PRO GLY ARG ILE MET HIS SER HIS ASP PHE ARG ASP SEQRES 17 A 464 ALA GLU GLU PHE ARG GLY LYS ASN VAL ILE VAL LEU GLY SEQRES 18 A 464 SER SER TYR SER ALA GLU ASP VAL ALA LEU GLN CYS ASN SEQRES 19 A 464 LYS TYR GLY ALA LYS SER VAL THR ILE GLY TYR ARG HIS SEQRES 20 A 464 ASN PRO MET GLY PHE LYS TRP PRO LYS GLY MET LYS GLU SEQRES 21 A 464 VAL HIS TYR LEU ASP LYS LEU ASP GLY LYS LYS ALA ILE SEQRES 22 A 464 PHE LYS ASP GLY THR GLU GLN ASP ALA ASP VAL VAL ILE SEQRES 23 A 464 LEU CYS THR GLY TYR LEU HIS HIS PHE PRO PHE LEU ASP SEQRES 24 A 464 GLU SER LEU LYS LEU LYS THR HIS ASN ARG LEU TYR PRO SEQRES 25 A 464 PRO LYS LEU TYR LYS GLY VAL VAL TRP GLN ASP ASN HIS SEQRES 26 A 464 LYS LEU LEU TYR LEU GLY MET GLN ASP GLN PHE HIS THR SEQRES 27 A 464 PHE ASN MET PHE ASP CYS GLN ALA TRP PHE ALA ARG ASP SEQRES 28 A 464 VAL ILE MET ASP LYS ILE LYS MET PRO SER ASP ASP GLU SEQRES 29 A 464 ILE ASP LYS ASP ILE ASN LYS TRP VAL SER MET GLU GLU SEQRES 30 A 464 LYS LEU GLU ASN PRO ASP GLN MET ILE ASP PHE GLN THR SEQRES 31 A 464 GLU TYR THR LYS GLU LEU HIS ASN ILE SER ASP TYR PRO SEQRES 32 A 464 LYS ILE ASP PHE GLU LEU ILE ARG LYS HIS PHE LYS GLU SEQRES 33 A 464 TRP GLU HIS HIS LYS VAL GLU ASP ILE LEU THR TYR ARG SEQRES 34 A 464 ASN LYS SER PHE SER SER PRO VAL THR GLY SER VAL ALA SEQRES 35 A 464 PRO VAL HIS HIS THR PRO TRP GLU LYS ALA MET ASP ASP SEQRES 36 A 464 SER MET LYS THR PHE LEU ASN LYS ARG SEQRES 1 B 464 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 464 LEU VAL PRO ARG GLY SER HIS MET SER LYS VAL ALA ILE SEQRES 3 B 464 ILE GLY ALA GLY PRO CYS GLY LEU SER ILE LEU ARG ALA SEQRES 4 B 464 PHE GLU HIS LEU GLU LYS LYS GLY GLU LYS ILE PRO GLU SEQRES 5 B 464 ILE VAL CYS PHE GLU LYS GLN GLU SER TRP GLY GLY LEU SEQRES 6 B 464 TRP ASN TYR ASN TRP ARG THR GLY SER ASP GLN TYR GLY SEQRES 7 B 464 ASP PRO VAL PRO ASN SER MET TYR ARG TYR LEU TRP SER SEQRES 8 B 464 ASN GLY PRO LYS GLU CYS LEU GLU PHE ALA ASP TYR SER SEQRES 9 B 464 PHE ASP GLN HIS PHE GLY LYS SER ILE PRO SER PHE PRO SEQRES 10 B 464 PRO ARG GLU VAL LEU GLN ASP TYR ILE LEU GLY ARG VAL SEQRES 11 B 464 SER LYS GLY ASN ILE LYS ASN LYS ILE LYS PHE ASN THR SEQRES 12 B 464 ARG VAL ILE ASN THR VAL TYR ARG ASN ASP LYS PHE GLU SEQRES 13 B 464 ILE ASN TYR GLN ASP LYS VAL ASN ASP LYS THR LEU SER SEQRES 14 B 464 ASP THR PHE ASP TYR LEU VAL VAL SER THR GLY HIS PHE SEQRES 15 B 464 SER VAL PRO PHE ILE PRO GLU TYR GLU GLY MET SER SER SEQRES 16 B 464 PHE PRO GLY ARG ILE MET HIS SER HIS ASP PHE ARG ASP SEQRES 17 B 464 ALA GLU GLU PHE ARG GLY LYS ASN VAL ILE VAL LEU GLY SEQRES 18 B 464 SER SER TYR SER ALA GLU ASP VAL ALA LEU GLN CYS ASN SEQRES 19 B 464 LYS TYR GLY ALA LYS SER VAL THR ILE GLY TYR ARG HIS SEQRES 20 B 464 ASN PRO MET GLY PHE LYS TRP PRO LYS GLY MET LYS GLU SEQRES 21 B 464 VAL HIS TYR LEU ASP LYS LEU ASP GLY LYS LYS ALA ILE SEQRES 22 B 464 PHE LYS ASP GLY THR GLU GLN ASP ALA ASP VAL VAL ILE SEQRES 23 B 464 LEU CYS THR GLY TYR LEU HIS HIS PHE PRO PHE LEU ASP SEQRES 24 B 464 GLU SER LEU LYS LEU LYS THR HIS ASN ARG LEU TYR PRO SEQRES 25 B 464 PRO LYS LEU TYR LYS GLY VAL VAL TRP GLN ASP ASN HIS SEQRES 26 B 464 LYS LEU LEU TYR LEU GLY MET GLN ASP GLN PHE HIS THR SEQRES 27 B 464 PHE ASN MET PHE ASP CYS GLN ALA TRP PHE ALA ARG ASP SEQRES 28 B 464 VAL ILE MET ASP LYS ILE LYS MET PRO SER ASP ASP GLU SEQRES 29 B 464 ILE ASP LYS ASP ILE ASN LYS TRP VAL SER MET GLU GLU SEQRES 30 B 464 LYS LEU GLU ASN PRO ASP GLN MET ILE ASP PHE GLN THR SEQRES 31 B 464 GLU TYR THR LYS GLU LEU HIS ASN ILE SER ASP TYR PRO SEQRES 32 B 464 LYS ILE ASP PHE GLU LEU ILE ARG LYS HIS PHE LYS GLU SEQRES 33 B 464 TRP GLU HIS HIS LYS VAL GLU ASP ILE LEU THR TYR ARG SEQRES 34 B 464 ASN LYS SER PHE SER SER PRO VAL THR GLY SER VAL ALA SEQRES 35 B 464 PRO VAL HIS HIS THR PRO TRP GLU LYS ALA MET ASP ASP SEQRES 36 B 464 SER MET LYS THR PHE LEU ASN LYS ARG HET NAP A 501 48 HET FAD A 502 53 HET NAP B 501 48 HET FAD B 502 53 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 7 HOH *1056(H2 O) HELIX 1 AA1 GLY A 10 GLY A 27 1 18 HELIX 2 AA2 GLY A 43 ASN A 47 5 5 HELIX 3 AA3 PRO A 74 GLU A 79 5 6 HELIX 4 AA4 SER A 84 GLY A 90 1 7 HELIX 5 AA5 PRO A 98 SER A 111 1 14 HELIX 6 AA6 ILE A 115 ASN A 117 5 3 HELIX 7 AA7 GLY A 172 PHE A 176 5 5 HELIX 8 AA8 HIS A 184 PHE A 186 5 3 HELIX 9 AA9 ASP A 188 ARG A 193 5 6 HELIX 10 AB1 SER A 203 TYR A 216 1 14 HELIX 11 AB2 ASP A 279 LYS A 283 5 5 HELIX 12 AB3 LYS A 297 VAL A 299 5 3 HELIX 13 AB4 THR A 318 MET A 334 1 17 HELIX 14 AB5 SER A 341 LYS A 358 1 18 HELIX 15 AB6 ASN A 361 SER A 380 1 20 HELIX 16 AB7 ASP A 386 ASP A 404 1 19 HELIX 17 AB8 THR A 407 LYS A 411 5 5 HELIX 18 AB9 PRO A 428 ALA A 432 5 5 HELIX 19 AC1 SER A 436 ASN A 442 1 7 HELIX 20 AC2 GLY B 10 GLY B 27 1 18 HELIX 21 AC3 GLY B 43 ASN B 47 5 5 HELIX 22 AC4 PRO B 74 LEU B 78 5 5 HELIX 23 AC5 SER B 84 GLY B 90 1 7 HELIX 24 AC6 PRO B 98 SER B 111 1 14 HELIX 25 AC7 ILE B 115 ASN B 117 5 3 HELIX 26 AC8 GLY B 172 PHE B 176 5 5 HELIX 27 AC9 HIS B 184 PHE B 186 5 3 HELIX 28 AD1 ASP B 188 ARG B 193 5 6 HELIX 29 AD2 SER B 203 TYR B 216 1 14 HELIX 30 AD3 ASP B 279 LYS B 283 5 5 HELIX 31 AD4 LYS B 297 VAL B 299 5 3 HELIX 32 AD5 THR B 318 MET B 334 1 17 HELIX 33 AD6 SER B 341 LYS B 358 1 18 HELIX 34 AD7 ASN B 361 SER B 380 1 20 HELIX 35 AD8 ASP B 386 ASP B 404 1 19 HELIX 36 AD9 THR B 407 LYS B 411 5 5 HELIX 37 AE1 PRO B 428 ALA B 432 5 5 HELIX 38 AE2 SER B 436 LEU B 441 1 6 SHEET 1 AA1 5 ILE A 119 LYS A 120 0 SHEET 2 AA1 5 GLU A 32 PHE A 36 1 N CYS A 35 O LYS A 120 SHEET 3 AA1 5 LYS A 3 ILE A 7 1 N VAL A 4 O GLU A 32 SHEET 4 AA1 5 TYR A 154 VAL A 157 1 O VAL A 156 N ALA A 5 SHEET 5 AA1 5 LEU A 307 TYR A 309 1 O LEU A 308 N VAL A 157 SHEET 1 AA2 3 THR A 123 ARG A 131 0 SHEET 2 AA2 3 LYS A 134 ASP A 141 -1 O GLU A 136 N VAL A 129 SHEET 3 AA2 3 LYS A 146 PHE A 152 -1 O PHE A 152 N PHE A 135 SHEET 1 AA3 2 VAL A 164 PRO A 165 0 SHEET 2 AA3 2 TYR A 271 LEU A 272 -1 O LEU A 272 N VAL A 164 SHEET 1 AA4 5 ARG A 179 HIS A 182 0 SHEET 2 AA4 5 VAL A 264 LEU A 267 1 O LEU A 267 N MET A 181 SHEET 3 AA4 5 ASN A 196 LEU A 200 1 N ILE A 198 O ILE A 266 SHEET 4 AA4 5 SER A 220 TYR A 225 1 O GLY A 224 N VAL A 199 SHEET 5 AA4 5 MET A 238 HIS A 242 1 O LYS A 239 N ILE A 223 SHEET 1 AA5 3 LEU A 244 ASP A 248 0 SHEET 2 AA5 3 LYS A 251 PHE A 254 -1 O LYS A 251 N ASP A 248 SHEET 3 AA5 3 GLU A 259 ASP A 261 -1 O GLN A 260 N ALA A 252 SHEET 1 AA6 2 LEU A 295 TYR A 296 0 SHEET 2 AA6 2 VAL A 300 TRP A 301 -1 O VAL A 300 N TYR A 296 SHEET 1 AA7 5 ILE B 119 LYS B 120 0 SHEET 2 AA7 5 GLU B 32 PHE B 36 1 N CYS B 35 O LYS B 120 SHEET 3 AA7 5 LYS B 3 ILE B 7 1 N ILE B 6 O PHE B 36 SHEET 4 AA7 5 TYR B 154 VAL B 157 1 O VAL B 156 N ALA B 5 SHEET 5 AA7 5 LEU B 307 TYR B 309 1 O LEU B 308 N VAL B 157 SHEET 1 AA8 3 THR B 123 ARG B 131 0 SHEET 2 AA8 3 LYS B 134 ASP B 141 -1 O GLU B 136 N VAL B 129 SHEET 3 AA8 3 LYS B 146 PHE B 152 -1 O PHE B 152 N PHE B 135 SHEET 1 AA9 2 VAL B 164 PRO B 165 0 SHEET 2 AA9 2 TYR B 271 LEU B 272 -1 O LEU B 272 N VAL B 164 SHEET 1 AB1 5 ARG B 179 HIS B 182 0 SHEET 2 AB1 5 VAL B 264 LEU B 267 1 O LEU B 267 N MET B 181 SHEET 3 AB1 5 ASN B 196 LEU B 200 1 N ILE B 198 O ILE B 266 SHEET 4 AB1 5 SER B 220 TYR B 225 1 O SER B 220 N VAL B 197 SHEET 5 AB1 5 MET B 238 HIS B 242 1 O VAL B 241 N ILE B 223 SHEET 1 AB2 3 LEU B 244 LEU B 247 0 SHEET 2 AB2 3 LYS B 251 PHE B 254 -1 O ILE B 253 N LYS B 246 SHEET 3 AB2 3 GLU B 259 ASP B 261 -1 O GLN B 260 N ALA B 252 SHEET 1 AB3 2 LEU B 295 TYR B 296 0 SHEET 2 AB3 2 VAL B 300 TRP B 301 -1 O VAL B 300 N TYR B 296 SITE 1 AC1 35 TYR A 66 LEU A 69 TRP A 70 ASN A 72 SITE 2 AC1 35 PHE A 162 PRO A 168 TYR A 170 SER A 202 SITE 3 AC1 35 SER A 203 TYR A 204 SER A 205 ASP A 208 SITE 4 AC1 35 ARG A 226 HIS A 227 CYS A 268 THR A 269 SITE 5 AC1 35 ASN A 288 ARG A 409 FAD A 502 HOH A 621 SITE 6 AC1 35 HOH A 647 HOH A 674 HOH A 706 HOH A 744 SITE 7 AC1 35 HOH A 761 HOH A 775 HOH A 798 HOH A 803 SITE 8 AC1 35 HOH A 813 HOH A 823 HOH A 851 HOH A 852 SITE 9 AC1 35 HOH A 877 HOH A 878 HOH A 928 SITE 1 AC2 38 ILE A 7 GLY A 8 GLY A 10 PRO A 11 SITE 2 AC2 38 CYS A 12 PHE A 36 GLU A 37 LYS A 38 SITE 3 AC2 38 GLN A 39 GLY A 44 LEU A 45 TRP A 46 SITE 4 AC2 38 PRO A 62 MET A 65 SER A 71 ASN A 72 SITE 5 AC2 38 LEU A 78 THR A 123 ARG A 124 VAL A 125 SITE 6 AC2 38 SER A 158 THR A 159 GLY A 160 PHE A 162 SITE 7 AC2 38 PHE A 277 GLN A 315 THR A 318 PHE A 319 SITE 8 AC2 38 PHE A 322 NAP A 501 HOH A 660 HOH A 688 SITE 9 AC2 38 HOH A 747 HOH A 757 HOH A 806 HOH A 810 SITE 10 AC2 38 HOH A 826 HOH A 865 SITE 1 AC3 36 TYR B 66 LEU B 69 TRP B 70 ASN B 72 SITE 2 AC3 36 PHE B 162 PRO B 168 TYR B 170 SER B 202 SITE 3 AC3 36 SER B 203 TYR B 204 SER B 205 ASP B 208 SITE 4 AC3 36 ARG B 226 HIS B 227 CYS B 268 THR B 269 SITE 5 AC3 36 TYR B 271 ASN B 288 ARG B 409 FAD B 502 SITE 6 AC3 36 HOH B 613 HOH B 638 HOH B 672 HOH B 679 SITE 7 AC3 36 HOH B 683 HOH B 705 HOH B 710 HOH B 731 SITE 8 AC3 36 HOH B 749 HOH B 760 HOH B 802 HOH B 807 SITE 9 AC3 36 HOH B 843 HOH B 884 HOH B 942 HOH B 961 SITE 1 AC4 36 ILE B 7 GLY B 8 GLY B 10 PRO B 11 SITE 2 AC4 36 CYS B 12 PHE B 36 GLU B 37 LYS B 38 SITE 3 AC4 36 GLN B 39 GLY B 44 LEU B 45 TRP B 46 SITE 4 AC4 36 PRO B 62 MET B 65 SER B 71 ASN B 72 SITE 5 AC4 36 LEU B 78 THR B 123 ARG B 124 VAL B 125 SITE 6 AC4 36 SER B 158 THR B 159 GLY B 160 PHE B 162 SITE 7 AC4 36 PHE B 277 GLN B 315 THR B 318 NAP B 501 SITE 8 AC4 36 HOH B 684 HOH B 688 HOH B 714 HOH B 758 SITE 9 AC4 36 HOH B 765 HOH B 776 HOH B 791 HOH B 880 CRYST1 69.025 81.837 97.929 90.00 98.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014488 0.000000 0.002068 0.00000 SCALE2 0.000000 0.012219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010315 0.00000