HEADER TRANSFERASE 24-SEP-20 7D4S TITLE APO-FORM CYCLIC TRINUCLEOTIDE SYNTHASE CDND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC AMP-AMP-GMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CGAS/DNCV-LIKE NUCLEOTIDYLTRANSFERASE,CD-NTASE; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: CDND02, P853_02262; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SUBSTRATE ANALOGUE CYCLIC TRINUCLEOTIDE SYNTHESIS NUCLEOTIDYL KEYWDS 2 TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-S.YANG,M.-H.HOU,C.-L.TSAI,Y.-C.WANG,T.-P.KO,Y.CHEN REVDAT 4 29-NOV-23 7D4S 1 REMARK REVDAT 3 19-MAY-21 7D4S 1 JRNL REVDAT 2 21-APR-21 7D4S 1 JRNL REVDAT 1 17-MAR-21 7D4S 0 JRNL AUTH T.P.KO,Y.C.WANG,C.L.TSAI,C.S.YANG,M.H.HOU,Y.CHEN JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL IMPLICATION OF A BACTERIAL JRNL TITL 2 CYCLIC AMP-AMP-GMP SYNTHETASE. JRNL REF NUCLEIC ACIDS RES. V. 49 4725 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33836064 JRNL DOI 10.1093/NAR/GKAB165 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 31018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0000 - 1.9300 0.86 2316 121 0.1981 0.2247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.188 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.932 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2941 REMARK 3 ANGLE : 0.897 4009 REMARK 3 CHIRALITY : 0.053 427 REMARK 3 PLANARITY : 0.006 508 REMARK 3 DIHEDRAL : 20.503 1739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5275 52.2651 44.5831 REMARK 3 T TENSOR REMARK 3 T11: 0.2943 T22: 0.1265 REMARK 3 T33: 0.2126 T12: 0.0178 REMARK 3 T13: -0.0054 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6250 L22: 0.2783 REMARK 3 L33: 0.3641 L12: 0.2476 REMARK 3 L13: -0.0833 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.1453 S12: -0.0061 S13: 0.1927 REMARK 3 S21: -0.0540 S22: -0.1007 S23: 0.0930 REMARK 3 S31: -0.5245 S32: 0.0019 S33: -0.2590 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0643 39.4123 55.6289 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: 0.0729 REMARK 3 T33: 0.0884 T12: 0.0211 REMARK 3 T13: -0.0128 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.4637 L22: 0.2775 REMARK 3 L33: 0.2934 L12: 0.0201 REMARK 3 L13: -0.1870 L23: 0.2386 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0759 S13: 0.0978 REMARK 3 S21: -0.0026 S22: -0.0623 S23: 0.0906 REMARK 3 S31: -0.0927 S32: -0.0705 S33: -0.0140 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5377 39.0155 58.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1299 REMARK 3 T33: 0.1348 T12: -0.0143 REMARK 3 T13: -0.0161 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.3067 L22: 0.0872 REMARK 3 L33: 0.2947 L12: -0.0307 REMARK 3 L13: -0.1865 L23: 0.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0700 S13: 0.0451 REMARK 3 S21: 0.0075 S22: -0.0388 S23: -0.0010 REMARK 3 S31: -0.0715 S32: 0.0450 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3650 36.9933 32.9153 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: 0.1354 REMARK 3 T33: 0.0881 T12: -0.0018 REMARK 3 T13: -0.0174 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5577 L22: 0.4504 REMARK 3 L33: 0.5728 L12: -0.1638 REMARK 3 L13: -0.1986 L23: 0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: 0.1450 S13: 0.0086 REMARK 3 S21: -0.0703 S22: -0.0297 S23: 0.0419 REMARK 3 S31: -0.0779 S32: -0.0271 S33: 0.0035 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB 7D4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM AMPCPP, 10 MM GTP, 10 MM MGCL2, REMARK 280 0.2 M NA-MALONATE, PH 6.0, AND 20% W/V PEG 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.15800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.21600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.15800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.21600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.70500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.15800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.21600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.70500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.15800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.21600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 716 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 851 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 169 REMARK 465 TRP A 170 REMARK 465 LEU A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 SER A 174 REMARK 465 ASN A 175 REMARK 465 SER A 176 REMARK 465 ALA A 177 REMARK 465 GLN A 178 REMARK 465 PRO A 356 REMARK 465 GLN A 357 REMARK 465 GLY A 358 REMARK 465 GLY A 359 REMARK 465 ASP A 360 REMARK 465 ARG A 361 REMARK 465 ASN A 362 REMARK 465 GLY A 363 REMARK 465 GLY A 364 REMARK 465 PHE A 365 REMARK 465 THR A 366 REMARK 465 THR A 367 REMARK 465 PRO A 368 REMARK 465 SER A 369 REMARK 465 LYS A 370 REMARK 465 PRO A 371 REMARK 465 ALA A 372 REMARK 465 GLU A 373 REMARK 465 PRO A 374 REMARK 465 GLN A 375 REMARK 465 LYS A 376 REMARK 465 THR A 377 REMARK 465 GLY A 378 REMARK 465 ARG A 379 REMARK 465 PHE A 380 REMARK 465 ALA A 381 REMARK 465 LEU A 382 REMARK 465 GLU A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 801 O HOH A 806 2.05 REMARK 500 O HOH A 784 O HOH A 875 2.05 REMARK 500 O HOH A 538 O HOH A 783 2.07 REMARK 500 O HOH A 698 O HOH A 875 2.11 REMARK 500 O HOH A 849 O HOH A 906 2.11 REMARK 500 O HOH A 743 O HOH A 849 2.13 REMARK 500 O HOH A 819 O HOH A 912 2.15 REMARK 500 OE1 GLN A 238 O HOH A 501 2.15 REMARK 500 O HOH A 692 O HOH A 823 2.17 REMARK 500 O HOH A 508 O HOH A 546 2.18 REMARK 500 OE1 GLN A 337 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 913 O HOH A 913 3555 2.08 REMARK 500 O HOH A 751 O HOH A 820 8456 2.10 REMARK 500 O HOH A 837 O HOH A 856 8456 2.16 REMARK 500 O HOH A 919 O HOH A 928 8456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 187 -21.79 -143.78 REMARK 500 SER A 290 -157.31 -126.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 950 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 951 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 952 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 953 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 954 DISTANCE = 7.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD2 REMARK 620 2 ASP A 71 OD2 89.9 REMARK 620 3 APC A 401 O2G 91.8 176.5 REMARK 620 4 APC A 401 O2B 176.3 89.0 89.5 REMARK 620 5 APC A 401 O2A 89.0 90.2 92.9 87.5 REMARK 620 6 HOH A 555 O 93.6 86.3 90.5 89.9 175.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD1 REMARK 620 2 ASP A 69 OD2 51.1 REMARK 620 3 ASP A 71 OD1 109.4 87.7 REMARK 620 4 ASP A 121 OD2 91.1 138.1 89.8 REMARK 620 5 APC A 401 O2A 120.0 73.5 86.8 148.0 REMARK 620 6 HOH A 768 O 90.0 101.9 160.1 94.4 79.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 258 O REMARK 620 2 LEU A 260 O 94.5 REMARK 620 3 HOH A 525 O 81.6 81.1 REMARK 620 4 HOH A 630 O 174.1 88.2 104.0 REMARK 620 5 HOH A 634 O 97.0 92.0 172.8 77.7 REMARK 620 6 HOH A 821 O 84.8 175.9 94.8 92.8 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 APC A 402 O3G REMARK 620 2 APC A 402 O2B 102.1 REMARK 620 3 HOH A 684 O 158.6 71.9 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7D48 RELATED DB: PDB REMARK 900 APO FORM IN TETRAGONAL UNIT CELL REMARK 900 RELATED ID: 7D4J RELATED DB: PDB REMARK 900 DDATP COMPLEX IN TETRAGONAL UNIT CELL REMARK 900 RELATED ID: 7D4O RELATED DB: PDB REMARK 900 ATP AND ADP COMPLEX IN MONOCLINIC UNIT CELL REMARK 900 RELATED ID: 7D4U RELATED DB: PDB DBREF 7D4S A 1 381 UNP P0DSP4 CDND2_ENTCL 1 381 SEQADV 7D4S LEU A 382 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4S GLU A 383 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4S HIS A 384 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4S HIS A 385 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4S HIS A 386 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4S HIS A 387 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4S HIS A 388 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4S HIS A 389 UNP P0DSP4 EXPRESSION TAG SEQRES 1 A 389 MET GLU LEU GLN PRO GLN PHE ASN GLU PHE LEU ALA ASN SEQRES 2 A 389 ILE ARG PRO THR ASP THR GLN LYS GLU ASP TRP LYS SER SEQRES 3 A 389 GLY ALA ARG THR LEU ARG GLU ARG LEU LYS ASN PHE GLU SEQRES 4 A 389 PRO LEU LYS GLU ILE VAL VAL SER THR PHE LEU GLN GLY SEQRES 5 A 389 SER ILE ARG ARG SER THR ALA ILE ARG PRO LEU GLY ASP SEQRES 6 A 389 LYS ARG PRO ASP VAL ASP ILE VAL VAL VAL THR ASN LEU SEQRES 7 A 389 ASP HIS THR ARG MET SER PRO THR ASP ALA MET ASP LEU SEQRES 8 A 389 PHE ILE PRO PHE LEU GLU LYS TYR TYR PRO GLY LYS TRP SEQRES 9 A 389 GLU THR GLN GLY ARG SER PHE GLY ILE THR LEU SER TYR SEQRES 10 A 389 VAL GLU LEU ASP LEU VAL ILE THR ALA ILE PRO GLU SER SEQRES 11 A 389 GLY ALA GLU LYS SER HIS LEU GLU GLN LEU TYR LYS SER SEQRES 12 A 389 GLU SER VAL LEU THR VAL ASN SER LEU GLU GLU GLN THR SEQRES 13 A 389 ASP TRP ARG LEU ASN LYS SER TRP THR PRO ASN THR GLY SEQRES 14 A 389 TRP LEU SER GLU SER ASN SER ALA GLN VAL GLU ASP ALA SEQRES 15 A 389 PRO ALA SER GLU TRP LYS ALA HIS PRO LEU VAL LEU PRO SEQRES 16 A 389 ASP ARG GLU LYS ASN GLU TRP GLY ARG THR HIS PRO LEU SEQRES 17 A 389 ALA GLN ILE ARG TRP THR ALA GLU LYS ASN ARG LEU CYS SEQRES 18 A 389 ASN GLY HIS TYR ILE ASN LEU VAL ARG ALA VAL LYS TRP SEQRES 19 A 389 TRP ARG GLN GLN ASN SER GLU ASP LEU PRO LYS TYR PRO SEQRES 20 A 389 LYS GLY TYR PRO LEU GLU HIS LEU ILE GLY ASN ALA LEU SEQRES 21 A 389 ASP ASN GLY THR THR SER MET ALA GLN GLY LEU VAL GLN SEQRES 22 A 389 LEU MET ASP THR PHE LEU SER ARG TRP ALA ALA ILE TYR SEQRES 23 A 389 ASN GLN LYS SER LYS PRO TRP LEU SER ASP HIS GLY VAL SEQRES 24 A 389 ALA GLU HIS ASP VAL MET ALA ARG LEU THR ALA GLU ASP SEQRES 25 A 389 PHE CYS SER PHE TYR GLU GLY ILE ALA SER ALA ALA GLU SEQRES 26 A 389 ILE ALA ARG ASN ALA LEU ALA SER GLU GLU PRO GLN GLU SEQRES 27 A 389 SER ALA GLN LEU TRP ARG GLN LEU PHE GLY SER LYS PHE SEQRES 28 A 389 PRO LEU PRO GLY PRO GLN GLY GLY ASP ARG ASN GLY GLY SEQRES 29 A 389 PHE THR THR PRO SER LYS PRO ALA GLU PRO GLN LYS THR SEQRES 30 A 389 GLY ARG PHE ALA LEU GLU HIS HIS HIS HIS HIS HIS HET APC A 401 31 HET APC A 402 31 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HET MG A 406 1 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM MG MAGNESIUM ION HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 2 APC 2(C11 H18 N5 O12 P3) FORMUL 4 MG 4(MG 2+) FORMUL 8 HOH *454(H2 O) HELIX 1 AA1 LEU A 3 ARG A 15 1 13 HELIX 2 AA2 THR A 17 PHE A 38 1 22 HELIX 3 AA3 GLU A 39 LYS A 42 5 4 HELIX 4 AA4 GLY A 52 ARG A 56 1 5 HELIX 5 AA5 SER A 84 LEU A 91 1 8 HELIX 6 AA6 PHE A 92 TYR A 100 1 9 HELIX 7 AA7 SER A 130 LYS A 142 1 13 HELIX 8 AA8 SER A 143 THR A 148 1 6 HELIX 9 AA9 SER A 151 GLN A 155 5 5 HELIX 10 AB1 PRO A 183 TRP A 187 5 5 HELIX 11 AB2 HIS A 206 CYS A 221 1 16 HELIX 12 AB3 HIS A 224 ASN A 239 1 16 HELIX 13 AB4 SER A 240 LEU A 243 5 4 HELIX 14 AB5 LYS A 248 LEU A 260 1 13 HELIX 15 AB6 SER A 266 TRP A 282 1 17 HELIX 16 AB7 TRP A 282 GLN A 288 1 7 HELIX 17 AB8 THR A 309 SER A 333 1 25 HELIX 18 AB9 GLU A 335 GLY A 348 1 14 SHEET 1 AA1 5 VAL A 45 GLN A 51 0 SHEET 2 AA1 5 ASP A 69 THR A 76 -1 O VAL A 75 N VAL A 46 SHEET 3 AA1 5 GLU A 119 ALA A 126 1 O VAL A 123 N VAL A 74 SHEET 4 AA1 5 SER A 110 THR A 114 -1 N PHE A 111 O LEU A 122 SHEET 5 AA1 5 TRP A 104 GLN A 107 -1 N GLN A 107 O SER A 110 SHEET 1 AA2 2 LEU A 192 PRO A 195 0 SHEET 2 AA2 2 TRP A 202 THR A 205 -1 O GLY A 203 N LEU A 194 LINK OD2 ASP A 69 MG MG A 403 1555 1555 2.07 LINK OD1 ASP A 69 MG MG A 404 1555 1555 2.62 LINK OD2 ASP A 69 MG MG A 404 1555 1555 2.43 LINK OD2 ASP A 71 MG MG A 403 1555 1555 2.11 LINK OD1 ASP A 71 MG MG A 404 1555 1555 2.28 LINK OD2 ASP A 121 MG MG A 404 1555 1555 2.22 LINK O ASN A 258 MG MG A 405 1555 1555 2.40 LINK O LEU A 260 MG MG A 405 1555 1555 2.50 LINK O2G APC A 401 MG MG A 403 1555 1555 2.08 LINK O2B APC A 401 MG MG A 403 1555 1555 2.08 LINK O2A APC A 401 MG MG A 403 1555 1555 2.09 LINK O2A APC A 401 MG MG A 404 1555 1555 2.44 LINK O3G APC A 402 MG MG A 406 1555 1555 2.13 LINK O2B APC A 402 MG MG A 406 1555 1555 2.17 LINK MG MG A 403 O HOH A 555 1555 1555 2.09 LINK MG MG A 404 O HOH A 768 1555 1555 2.39 LINK MG MG A 405 O HOH A 525 1555 1555 2.55 LINK MG MG A 405 O HOH A 630 1555 8556 2.28 LINK MG MG A 405 O HOH A 634 1555 1555 2.48 LINK MG MG A 405 O HOH A 821 1555 1555 2.49 LINK MG MG A 406 O HOH A 684 1555 1555 2.64 CISPEP 1 TYR A 246 PRO A 247 0 7.53 CRYST1 66.316 116.432 107.410 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009310 0.00000