HEADER TRANSFERASE 24-SEP-20 7D4U TITLE ATP COMPLEX WITH DOUBLE MUTANT CYCLIC TRINUCLEOTIDE SYNTHASE CDND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC AMP-AMP-GMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CGAS/DNCV-LIKE NUCLEOTIDYLTRANSFERASE,CD-NTASE; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: CDND02, P853_02262; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS CYCLIC TRINUCLEOTIDE SYNTHESIS NUCLEOTIDYL TRANSFERASE SUBSTRATE KEYWDS 2 COMPLEX ACTIVE-SITE DOUBLE MUTANT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-S.YANG,M.-H.HOU,C.-L.TSAI,Y.-C.WANG,T.-P.KO,Y.CHEN REVDAT 4 29-NOV-23 7D4U 1 REMARK REVDAT 3 19-MAY-21 7D4U 1 JRNL REVDAT 2 21-APR-21 7D4U 1 JRNL REVDAT 1 17-MAR-21 7D4U 0 JRNL AUTH T.P.KO,Y.C.WANG,C.L.TSAI,C.S.YANG,M.H.HOU,Y.CHEN JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL IMPLICATION OF A BACTERIAL JRNL TITL 2 CYCLIC AMP-AMP-GMP SYNTHETASE. JRNL REF NUCLEIC ACIDS RES. V. 49 4725 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33836064 JRNL DOI 10.1093/NAR/GKAB165 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 11641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.9700 - 2.7000 0.95 2625 136 0.2250 0.2838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.315 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2911 REMARK 3 ANGLE : 0.648 3967 REMARK 3 CHIRALITY : 0.040 422 REMARK 3 PLANARITY : 0.004 501 REMARK 3 DIHEDRAL : 21.560 1741 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3373 44.7772 50.9623 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.2258 REMARK 3 T33: 0.2787 T12: 0.0382 REMARK 3 T13: -0.0226 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.2183 L22: 0.6748 REMARK 3 L33: 0.6234 L12: 0.1756 REMARK 3 L13: -0.1477 L23: 0.5316 REMARK 3 S TENSOR REMARK 3 S11: 0.0972 S12: -0.1390 S13: 0.2715 REMARK 3 S21: 0.1135 S22: -0.0963 S23: 0.2488 REMARK 3 S31: -0.3317 S32: -0.0236 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1302 38.8684 54.6652 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: 0.3278 REMARK 3 T33: 0.2816 T12: 0.0078 REMARK 3 T13: -0.0361 T23: -0.0790 REMARK 3 L TENSOR REMARK 3 L11: 1.3329 L22: 0.3533 REMARK 3 L33: 0.8145 L12: 0.1815 REMARK 3 L13: -0.6881 L23: -0.4598 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: -0.4177 S13: 0.1565 REMARK 3 S21: -0.0500 S22: 0.0177 S23: 0.0333 REMARK 3 S31: -0.0556 S32: 0.0842 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3811 40.5124 30.0984 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.1683 REMARK 3 T33: 0.1825 T12: -0.0116 REMARK 3 T13: -0.0160 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.9665 L22: 0.6183 REMARK 3 L33: 1.2018 L12: -0.0747 REMARK 3 L13: -0.5075 L23: 0.1775 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0830 S13: 0.0469 REMARK 3 S21: -0.1716 S22: -0.0404 S23: -0.0378 REMARK 3 S31: -0.1327 S32: 0.0468 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300018753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB 7D4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM ATP, 10 MM GTP, 10 MM MGCL2, 5% REMARK 280 W/V 1-BUTYL-3-METHYLIMIDAZOLIUM CHLORIDE, PH 7.4, 20% W/V PEG REMARK 280 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.43200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.11050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.43200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.11050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.19050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.43200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.11050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.19050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.43200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.11050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 639 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 664 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 672 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 687 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 696 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 697 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 167 REMARK 465 THR A 168 REMARK 465 GLY A 169 REMARK 465 TRP A 170 REMARK 465 LEU A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 SER A 174 REMARK 465 ASN A 175 REMARK 465 SER A 176 REMARK 465 ALA A 177 REMARK 465 GLN A 178 REMARK 465 GLY A 355 REMARK 465 PRO A 356 REMARK 465 GLN A 357 REMARK 465 GLY A 358 REMARK 465 GLY A 359 REMARK 465 ASP A 360 REMARK 465 ARG A 361 REMARK 465 ASN A 362 REMARK 465 GLY A 363 REMARK 465 GLY A 364 REMARK 465 PHE A 365 REMARK 465 THR A 366 REMARK 465 THR A 367 REMARK 465 PRO A 368 REMARK 465 SER A 369 REMARK 465 LYS A 370 REMARK 465 PRO A 371 REMARK 465 ALA A 372 REMARK 465 GLU A 373 REMARK 465 PRO A 374 REMARK 465 GLN A 375 REMARK 465 LYS A 376 REMARK 465 THR A 377 REMARK 465 GLY A 378 REMARK 465 ARG A 379 REMARK 465 PHE A 380 REMARK 465 ALA A 381 REMARK 465 LEU A 382 REMARK 465 GLU A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 107 59.57 -109.24 REMARK 500 GLN A 155 87.76 -156.27 REMARK 500 TRP A 187 -25.84 -158.11 REMARK 500 GLU A 198 -61.29 -101.07 REMARK 500 SER A 290 -160.16 -128.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 687 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 688 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 689 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 690 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 691 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 692 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 693 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 694 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 695 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 696 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 697 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 698 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A 699 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A 700 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH A 701 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH A 702 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A 703 DISTANCE = 9.02 ANGSTROMS REMARK 525 HOH A 704 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 9.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7D48 RELATED DB: PDB REMARK 900 APO FORM TETRAGONAL CRYSTAL REMARK 900 RELATED ID: 7D4J RELATED DB: PDB REMARK 900 DDATP COMPLEX TETRAGONAL CRYSTAL REMARK 900 RELATED ID: 7D4O RELATED DB: PDB REMARK 900 ATP + ADP OCMPLEX MONOCLINIC CRYSTAL REMARK 900 RELATED ID: 7D4S RELATED DB: PDB REMARK 900 AMPCPP COMPLEX, WILDTYPE ENZYME DBREF 7D4U A 1 381 UNP P0DSP4 CDND2_ENTCL 1 381 SEQADV 7D4U LYS A 69 UNP P0DSP4 ASP 69 ENGINEERED MUTATION SEQADV 7D4U LYS A 71 UNP P0DSP4 ASP 71 ENGINEERED MUTATION SEQADV 7D4U LEU A 382 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4U GLU A 383 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4U HIS A 384 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4U HIS A 385 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4U HIS A 386 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4U HIS A 387 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4U HIS A 388 UNP P0DSP4 EXPRESSION TAG SEQADV 7D4U HIS A 389 UNP P0DSP4 EXPRESSION TAG SEQRES 1 A 389 MET GLU LEU GLN PRO GLN PHE ASN GLU PHE LEU ALA ASN SEQRES 2 A 389 ILE ARG PRO THR ASP THR GLN LYS GLU ASP TRP LYS SER SEQRES 3 A 389 GLY ALA ARG THR LEU ARG GLU ARG LEU LYS ASN PHE GLU SEQRES 4 A 389 PRO LEU LYS GLU ILE VAL VAL SER THR PHE LEU GLN GLY SEQRES 5 A 389 SER ILE ARG ARG SER THR ALA ILE ARG PRO LEU GLY ASP SEQRES 6 A 389 LYS ARG PRO LYS VAL LYS ILE VAL VAL VAL THR ASN LEU SEQRES 7 A 389 ASP HIS THR ARG MET SER PRO THR ASP ALA MET ASP LEU SEQRES 8 A 389 PHE ILE PRO PHE LEU GLU LYS TYR TYR PRO GLY LYS TRP SEQRES 9 A 389 GLU THR GLN GLY ARG SER PHE GLY ILE THR LEU SER TYR SEQRES 10 A 389 VAL GLU LEU ASP LEU VAL ILE THR ALA ILE PRO GLU SER SEQRES 11 A 389 GLY ALA GLU LYS SER HIS LEU GLU GLN LEU TYR LYS SER SEQRES 12 A 389 GLU SER VAL LEU THR VAL ASN SER LEU GLU GLU GLN THR SEQRES 13 A 389 ASP TRP ARG LEU ASN LYS SER TRP THR PRO ASN THR GLY SEQRES 14 A 389 TRP LEU SER GLU SER ASN SER ALA GLN VAL GLU ASP ALA SEQRES 15 A 389 PRO ALA SER GLU TRP LYS ALA HIS PRO LEU VAL LEU PRO SEQRES 16 A 389 ASP ARG GLU LYS ASN GLU TRP GLY ARG THR HIS PRO LEU SEQRES 17 A 389 ALA GLN ILE ARG TRP THR ALA GLU LYS ASN ARG LEU CYS SEQRES 18 A 389 ASN GLY HIS TYR ILE ASN LEU VAL ARG ALA VAL LYS TRP SEQRES 19 A 389 TRP ARG GLN GLN ASN SER GLU ASP LEU PRO LYS TYR PRO SEQRES 20 A 389 LYS GLY TYR PRO LEU GLU HIS LEU ILE GLY ASN ALA LEU SEQRES 21 A 389 ASP ASN GLY THR THR SER MET ALA GLN GLY LEU VAL GLN SEQRES 22 A 389 LEU MET ASP THR PHE LEU SER ARG TRP ALA ALA ILE TYR SEQRES 23 A 389 ASN GLN LYS SER LYS PRO TRP LEU SER ASP HIS GLY VAL SEQRES 24 A 389 ALA GLU HIS ASP VAL MET ALA ARG LEU THR ALA GLU ASP SEQRES 25 A 389 PHE CYS SER PHE TYR GLU GLY ILE ALA SER ALA ALA GLU SEQRES 26 A 389 ILE ALA ARG ASN ALA LEU ALA SER GLU GLU PRO GLN GLU SEQRES 27 A 389 SER ALA GLN LEU TRP ARG GLN LEU PHE GLY SER LYS PHE SEQRES 28 A 389 PRO LEU PRO GLY PRO GLN GLY GLY ASP ARG ASN GLY GLY SEQRES 29 A 389 PHE THR THR PRO SER LYS PRO ALA GLU PRO GLN LYS THR SEQRES 30 A 389 GLY ARG PHE ALA LEU GLU HIS HIS HIS HIS HIS HIS HET ATP A 401 31 HET ATP A 402 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 HOH *205(H2 O) HELIX 1 AA1 LEU A 3 ARG A 15 1 13 HELIX 2 AA2 THR A 17 ASN A 37 1 21 HELIX 3 AA3 PHE A 38 LYS A 42 5 5 HELIX 4 AA4 GLY A 52 ARG A 56 1 5 HELIX 5 AA5 SER A 84 LEU A 91 1 8 HELIX 6 AA6 PHE A 92 TYR A 100 1 9 HELIX 7 AA7 GLY A 131 LYS A 142 1 12 HELIX 8 AA8 SER A 143 THR A 148 1 6 HELIX 9 AA9 SER A 151 GLN A 155 5 5 HELIX 10 AB1 PRO A 183 TRP A 187 5 5 HELIX 11 AB2 HIS A 206 CYS A 221 1 16 HELIX 12 AB3 HIS A 224 ASN A 239 1 16 HELIX 13 AB4 GLY A 249 LEU A 260 1 12 HELIX 14 AB5 SER A 266 TRP A 282 1 17 HELIX 15 AB6 TRP A 282 GLN A 288 1 7 HELIX 16 AB7 THR A 309 SER A 333 1 25 HELIX 17 AB8 GLU A 335 GLY A 348 1 14 SHEET 1 AA1 5 VAL A 45 GLN A 51 0 SHEET 2 AA1 5 LYS A 69 THR A 76 -1 O VAL A 73 N PHE A 49 SHEET 3 AA1 5 GLU A 119 ALA A 126 1 O ASP A 121 N VAL A 70 SHEET 4 AA1 5 SER A 110 THR A 114 -1 N ILE A 113 O LEU A 120 SHEET 5 AA1 5 TRP A 104 GLN A 107 -1 N GLU A 105 O GLY A 112 SHEET 1 AA2 2 LEU A 192 PRO A 195 0 SHEET 2 AA2 2 TRP A 202 THR A 205 -1 O GLY A 203 N LEU A 194 CISPEP 1 TYR A 246 PRO A 247 0 5.57 SITE 1 AC1 15 GLY A 52 SER A 53 ARG A 56 LYS A 71 SITE 2 AC1 15 GLN A 210 GLY A 249 TYR A 250 ASP A 296 SITE 3 AC1 15 VAL A 304 ATP A 402 HOH A 513 HOH A 527 SITE 4 AC1 15 HOH A 534 HOH A 539 HOH A 552 SITE 1 AC2 15 GLN A 51 ARG A 109 LEU A 194 ASP A 196 SITE 2 AC2 15 ARG A 197 ARG A 204 THR A 205 HIS A 302 SITE 3 AC2 15 ARG A 307 ATP A 401 HOH A 501 HOH A 502 SITE 4 AC2 15 HOH A 522 HOH A 540 HOH A 543 CRYST1 68.864 118.221 102.381 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014521 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009767 0.00000