HEADER TRANSFERASE 25-SEP-20 7D57 TITLE C-SRC IN COMPLEX WITH FIIN-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-SRC,PP60C-SRC,P60-SRC; COMPND 5 EC: 2.7.10.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.CHEN,L.Z.QU REVDAT 3 29-NOV-23 7D57 1 REMARK REVDAT 2 09-MAR-22 7D57 1 JRNL REVDAT 1 13-OCT-21 7D57 0 JRNL AUTH L.QU,X.CHEN,H.WEI,M.GUO,S.DAI,L.JIANG,J.LI,S.YUE,Z.CHEN, JRNL AUTH 2 Y.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO THE POTENCY AND SELECTIVITY OF JRNL TITL 2 COVALENT PAN-FGFR INHIBITORS JRNL REF COMMUN CHEM V. 5 5 2022 JRNL REFN ESSN 2399-3669 JRNL DOI 10.1038/S42004-021-00623-X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 3 NUMBER OF REFLECTIONS : 35293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4050 - 5.0618 0.98 2854 164 0.1744 0.1856 REMARK 3 2 5.0618 - 4.0217 0.95 2763 167 0.1549 0.1867 REMARK 3 3 4.0217 - 3.5146 0.96 2780 163 0.1670 0.2131 REMARK 3 4 3.5146 - 3.1937 0.97 2799 168 0.1788 0.2006 REMARK 3 5 3.1937 - 2.9651 0.98 2816 171 0.1962 0.2306 REMARK 3 6 2.9651 - 2.7905 0.98 2841 170 0.1953 0.2579 REMARK 3 7 2.7905 - 2.6509 0.96 2783 167 0.1988 0.2507 REMARK 3 8 2.6509 - 2.5355 0.96 2797 168 0.2043 0.2388 REMARK 3 9 2.5355 - 2.4380 0.92 2640 158 0.2111 0.2636 REMARK 3 10 2.4380 - 2.3539 0.87 2535 148 0.2235 0.2853 REMARK 3 11 2.3539 - 2.2803 0.72 2093 131 0.2272 0.2845 REMARK 3 12 2.2803 - 2.2152 0.50 1444 84 0.2373 0.2695 REMARK 3 13 2.2152 - 2.1569 0.44 1263 71 0.2319 0.2581 REMARK 3 14 2.1569 - 2.1043 0.31 897 58 0.2282 0.2915 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4289 REMARK 3 ANGLE : 0.867 5825 REMARK 3 CHIRALITY : 0.046 619 REMARK 3 PLANARITY : 0.005 736 REMARK 3 DIHEDRAL : 12.244 2609 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5771 4.7384 -47.5991 REMARK 3 T TENSOR REMARK 3 T11: 0.4918 T22: 0.3074 REMARK 3 T33: 0.2433 T12: 0.0625 REMARK 3 T13: 0.0298 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.4711 L22: 2.2113 REMARK 3 L33: 4.0061 L12: 0.0009 REMARK 3 L13: 0.1301 L23: -0.7184 REMARK 3 S TENSOR REMARK 3 S11: 0.1177 S12: 0.3124 S13: 0.0236 REMARK 3 S21: -0.8235 S22: -0.1432 S23: -0.1611 REMARK 3 S31: -0.1450 S32: 0.0818 S33: 0.0541 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 360 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7964 -3.5147 -26.1018 REMARK 3 T TENSOR REMARK 3 T11: 0.1395 T22: 0.2050 REMARK 3 T33: 0.1871 T12: 0.0347 REMARK 3 T13: 0.0078 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.9359 L22: 2.8357 REMARK 3 L33: 1.8890 L12: 0.4637 REMARK 3 L13: -0.3440 L23: -0.5046 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.1263 S13: -0.1173 REMARK 3 S21: -0.1193 S22: -0.1685 S23: -0.2902 REMARK 3 S31: 0.0438 S32: 0.3668 S33: 0.0729 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 257 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8469 38.2784 6.2768 REMARK 3 T TENSOR REMARK 3 T11: 1.1795 T22: 0.4066 REMARK 3 T33: 0.3706 T12: -0.0737 REMARK 3 T13: -0.1024 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.3715 L22: 2.8853 REMARK 3 L33: 2.8211 L12: 0.4053 REMARK 3 L13: -1.0435 L23: -0.9740 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: -0.2999 S13: 0.4061 REMARK 3 S21: 0.7122 S22: -0.1136 S23: 0.0419 REMARK 3 S31: -1.5414 S32: 0.3831 S33: 0.0937 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 309 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5547 27.4206 0.7806 REMARK 3 T TENSOR REMARK 3 T11: 0.6776 T22: 0.4509 REMARK 3 T33: 0.2263 T12: 0.0153 REMARK 3 T13: 0.0189 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 1.1572 L22: 1.3008 REMARK 3 L33: 5.3600 L12: 1.0746 REMARK 3 L13: 0.2760 L23: 1.0125 REMARK 3 S TENSOR REMARK 3 S11: -0.1808 S12: -0.3073 S13: 0.1320 REMARK 3 S21: 0.7784 S22: 0.0436 S23: 0.1750 REMARK 3 S31: -0.0587 S32: -0.6307 S33: 0.1188 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 330 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4418 31.1686 -11.3412 REMARK 3 T TENSOR REMARK 3 T11: 0.3405 T22: 0.1754 REMARK 3 T33: 0.2457 T12: -0.0341 REMARK 3 T13: -0.0353 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.0006 L22: 2.5088 REMARK 3 L33: 2.0707 L12: -0.5602 REMARK 3 L13: 0.2140 L23: 0.3379 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: -0.1298 S13: 0.2164 REMARK 3 S21: 0.5730 S22: 0.0085 S23: -0.1756 REMARK 3 S31: -0.2462 S32: -0.0284 S33: -0.0224 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 403 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7047 30.6407 -17.2703 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.3167 REMARK 3 T33: 0.2741 T12: -0.0170 REMARK 3 T13: 0.0198 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 4.1991 L22: 3.1573 REMARK 3 L33: 1.7493 L12: -0.2597 REMARK 3 L13: -0.3395 L23: -0.6015 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.1524 S13: 0.0023 REMARK 3 S21: 0.5614 S22: -0.0048 S23: 0.3734 REMARK 3 S31: -0.1582 S32: -0.5016 S33: -0.0414 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 457 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3973 36.2815 -29.5818 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.3749 REMARK 3 T33: 0.2865 T12: 0.0620 REMARK 3 T13: -0.0313 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.4785 L22: 3.2527 REMARK 3 L33: 1.9148 L12: 0.5529 REMARK 3 L13: 0.1076 L23: -0.0126 REMARK 3 S TENSOR REMARK 3 S11: 0.1723 S12: 0.4000 S13: 0.2915 REMARK 3 S21: -0.2181 S22: -0.1458 S23: 0.5420 REMARK 3 S31: -0.2191 S32: -0.5653 S33: 0.0294 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 489 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7035 21.2612 -26.8539 REMARK 3 T TENSOR REMARK 3 T11: 0.1875 T22: 0.2232 REMARK 3 T33: 0.1975 T12: -0.0691 REMARK 3 T13: 0.0026 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: 1.1731 L22: 3.7074 REMARK 3 L33: 1.5586 L12: -1.4839 REMARK 3 L13: 0.5336 L23: 0.0955 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.2953 S13: -0.2263 REMARK 3 S21: -0.2725 S22: -0.1332 S23: 0.1029 REMARK 3 S31: 0.0990 S32: -0.2164 S33: 0.1233 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35316 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 27.405 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4U5J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% GLYCEROL, 8% PEG 4000, 50MM SODIUM REMARK 280 ACETATE, 10MM MGCL2, PH 6.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 HIS A 249 REMARK 465 MET A 250 REMARK 465 GLN A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 LEU A 255 REMARK 465 ALA A 256 REMARK 465 LYS A 257 REMARK 465 LEU A 410 REMARK 465 ILE A 411 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLN A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 PHE A 424 REMARK 465 GLY B 248 REMARK 465 HIS B 249 REMARK 465 MET B 250 REMARK 465 GLN B 251 REMARK 465 THR B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 LEU B 255 REMARK 465 ALA B 256 REMARK 465 GLY B 276 REMARK 465 CYS B 277 REMARK 465 PHE B 278 REMARK 465 GLY B 279 REMARK 465 LYS B 298 REMARK 465 PRO B 299 REMARK 465 GLY B 300 REMARK 465 THR B 301 REMARK 465 MET B 302 REMARK 465 SER B 303 REMARK 465 LEU B 407 REMARK 465 ALA B 408 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLN B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 275 CG CD OE1 NE2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 GLN A 309 CG CD OE1 NE2 REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 LEU A 472 CG CD1 CD2 REMARK 470 LYS A 501 CG CD CE NZ REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 GLN B 275 CG CD OE1 NE2 REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 LEU B 297 CG CD1 CD2 REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 470 GLN B 309 CG CD OE1 NE2 REMARK 470 ASP B 404 CG OD1 OD2 REMARK 470 ARG B 409 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 719 O HOH A 844 1.84 REMARK 500 O HOH B 789 O HOH B 817 1.86 REMARK 500 O HOH A 770 O HOH A 834 1.88 REMARK 500 O HOH B 710 O HOH B 802 1.91 REMARK 500 O HOH B 704 O HOH B 799 1.91 REMARK 500 OE1 GLU A 489 O HOH A 701 1.93 REMARK 500 OG1 THR A 440 O HOH A 702 1.94 REMARK 500 O HOH A 842 O HOH A 859 1.96 REMARK 500 O HOH B 783 O HOH B 807 1.97 REMARK 500 O HOH A 853 O HOH A 862 2.01 REMARK 500 O HOH B 743 O HOH B 823 2.04 REMARK 500 O LYS A 343 O HOH A 703 2.06 REMARK 500 O HOH B 784 O HOH B 819 2.06 REMARK 500 O HOH A 836 O HOH A 857 2.07 REMARK 500 O HOH B 828 O HOH B 833 2.08 REMARK 500 O HOH A 798 O HOH A 837 2.09 REMARK 500 O LEU A 308 O HOH A 704 2.10 REMARK 500 NH2 ARG B 388 O HOH B 701 2.14 REMARK 500 O HOH A 854 O HOH B 798 2.16 REMARK 500 OG1 THR B 521 O HOH B 702 2.16 REMARK 500 O HOH A 854 O HOH B 803 2.17 REMARK 500 O HOH A 803 O HOH A 858 2.18 REMARK 500 O HOH A 817 O HOH A 840 2.18 REMARK 500 O HOH B 768 O HOH B 776 2.19 REMARK 500 O HOH B 814 O HOH B 815 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 841 O HOH B 717 1545 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 331 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 GLU B 331 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 386 54.41 -142.01 REMARK 500 PHE A 405 31.54 -99.38 REMARK 500 GLU A 486 -4.67 68.16 REMARK 500 GLU B 270 -113.50 -103.47 REMARK 500 LEU B 273 -41.45 -140.86 REMARK 500 ARG B 385 -4.16 84.65 REMARK 500 ASP B 386 47.19 -155.06 REMARK 500 PHE B 405 -70.51 -60.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 867 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 836 DISTANCE = 6.10 ANGSTROMS DBREF 7D57 A 251 533 UNP P00523 SRC_CHICK 251 533 DBREF 7D57 B 251 533 UNP P00523 SRC_CHICK 251 533 SEQADV 7D57 GLY A 248 UNP P00523 EXPRESSION TAG SEQADV 7D57 HIS A 249 UNP P00523 EXPRESSION TAG SEQADV 7D57 MET A 250 UNP P00523 EXPRESSION TAG SEQADV 7D57 GLY B 248 UNP P00523 EXPRESSION TAG SEQADV 7D57 HIS B 249 UNP P00523 EXPRESSION TAG SEQADV 7D57 MET B 250 UNP P00523 EXPRESSION TAG SEQRES 1 A 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 A 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 A 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 A 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 A 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 A 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 A 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 A 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 A 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 A 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 A 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 A 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 A 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 A 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 A 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 A 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 A 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 A 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 A 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 A 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 A 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 A 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 B 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 B 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 B 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 B 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 B 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 B 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 B 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 B 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 B 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 B 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 B 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 B 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 B 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 B 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 B 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 B 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 B 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 B 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 B 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 B 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 B 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU HET 37O A 601 47 HET SO4 A 602 5 HET SO4 A 603 5 HET 37O B 601 47 HETNAM 37O N-(4-{[3-(3,5-DIMETHOXYPHENYL)-7-{[4-(4- HETNAM 2 37O METHYLPIPERAZIN-1-YL)PHENYL]AMINO}-2-OXO-3,4- HETNAM 3 37O DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-1(2H)- HETNAM 4 37O YL]METHYL}PHENYL)PROPANAMIDE HETNAM SO4 SULFATE ION FORMUL 3 37O 2(C35 H40 N8 O4) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *303(H2 O) HELIX 1 AA1 PRO A 263 GLU A 265 5 3 HELIX 2 AA2 SER A 303 LEU A 317 1 15 HELIX 3 AA3 LEU A 346 GLY A 352 1 7 HELIX 4 AA4 MET A 354 LEU A 358 5 5 HELIX 5 AA5 ARG A 359 MET A 380 1 22 HELIX 6 AA6 ARG A 388 ALA A 390 5 3 HELIX 7 AA7 GLU A 396 LEU A 398 5 3 HELIX 8 AA8 PRO A 425 THR A 429 5 5 HELIX 9 AA9 ALA A 430 GLY A 437 1 8 HELIX 10 AB1 THR A 440 THR A 457 1 18 HELIX 11 AB2 VAL A 467 ARG A 477 1 11 HELIX 12 AB3 PRO A 488 TRP A 499 1 12 HELIX 13 AB4 ASP A 502 ARG A 506 5 5 HELIX 14 AB5 THR A 508 ASP A 518 1 11 HELIX 15 AB6 ASP A 518 THR A 523 1 6 HELIX 16 AB7 PRO B 263 GLU B 265 5 3 HELIX 17 AB8 LEU B 308 LEU B 317 1 10 HELIX 18 AB9 LEU B 346 GLY B 352 1 7 HELIX 19 AC1 ARG B 359 MET B 380 1 22 HELIX 20 AC2 ARG B 388 ALA B 390 5 3 HELIX 21 AC3 GLU B 396 LEU B 398 5 3 HELIX 22 AC4 ALA B 430 GLY B 437 1 8 HELIX 23 AC5 THR B 440 THR B 457 1 18 HELIX 24 AC6 VAL B 467 ARG B 477 1 11 HELIX 25 AC7 PRO B 488 TRP B 499 1 12 HELIX 26 AC8 ASP B 502 ARG B 506 5 5 HELIX 27 AC9 THR B 508 ASP B 518 1 11 HELIX 28 AD1 ASP B 518 THR B 523 1 6 SHEET 1 AA1 5 LEU A 267 GLY A 276 0 SHEET 2 AA1 5 GLY A 279 TRP A 286 -1 O VAL A 281 N LEU A 273 SHEET 3 AA1 5 THR A 290 THR A 296 -1 O ILE A 294 N TRP A 282 SHEET 4 AA1 5 TYR A 335 GLU A 339 -1 O ILE A 336 N LYS A 295 SHEET 5 AA1 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337 SHEET 1 AA2 3 GLY A 344 SER A 345 0 SHEET 2 AA2 3 ILE A 392 VAL A 394 -1 O VAL A 394 N GLY A 344 SHEET 3 AA2 3 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 AA3 5 LEU B 267 LYS B 272 0 SHEET 2 AA3 5 VAL B 281 TRP B 286 -1 O MET B 283 N GLU B 270 SHEET 3 AA3 5 THR B 290 THR B 296 -1 O ILE B 294 N TRP B 282 SHEET 4 AA3 5 TYR B 335 THR B 338 -1 O ILE B 336 N LYS B 295 SHEET 5 AA3 5 LEU B 325 VAL B 329 -1 N TYR B 326 O VAL B 337 SHEET 1 AA4 3 GLY B 344 SER B 345 0 SHEET 2 AA4 3 ILE B 392 VAL B 394 -1 O VAL B 394 N GLY B 344 SHEET 3 AA4 3 CYS B 400 VAL B 402 -1 O LYS B 401 N LEU B 393 LINK SG CYS A 277 C46 37O A 601 1555 1555 1.92 CISPEP 1 GLU A 332 PRO A 333 0 -5.56 CISPEP 2 GLU B 332 PRO B 333 0 -1.13 CRYST1 41.798 62.964 74.138 78.98 89.78 89.69 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023925 -0.000131 -0.000068 0.00000 SCALE2 0.000000 0.015882 -0.003092 0.00000 SCALE3 0.000000 0.000000 0.013742 0.00000