data_7D5D
# 
_entry.id   7D5D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.380 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   7D5D         pdb_00007d5d 10.2210/pdb7d5d/pdb 
WWPDB D_1300017850 ?            ?                   
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.entry_id                        7D5D 
_pdbx_database_status.recvd_initial_deposition_date   2020-09-25 
_pdbx_database_status.SG_entry                        N 
_pdbx_database_status.deposit_site                    PDBJ 
_pdbx_database_status.process_site                    PDBJ 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
_audit_author.identifier_ORCID 
'Das, P.'        1 ? 
'Ngo, K.H.'      2 ? 
'Winnerdy, F.R.' 3 ? 
'Maity, A.'      4 ? 
'Bakalar, B.'    5 ? 
'Mechulam, Y.'   6 ? 
'Schmitt, E.'    7 ? 
'Phan, A.T.'     8 ? 
# 
_citation.abstract                  ? 
_citation.abstract_id_CAS           ? 
_citation.book_id_ISBN              ? 
_citation.book_publisher            ? 
_citation.book_publisher_city       ? 
_citation.book_title                ? 
_citation.coordinate_linkage        ? 
_citation.country                   UK 
_citation.database_id_Medline       ? 
_citation.details                   ? 
_citation.id                        primary 
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_id_ASTM           NARHAD 
_citation.journal_id_CSD            0389 
_citation.journal_id_ISSN           1362-4962 
_citation.journal_full              ? 
_citation.journal_issue             ? 
_citation.journal_volume            49 
_citation.language                  ? 
_citation.page_first                1724 
_citation.page_last                 1736 
_citation.title                     'Bulges in left-handed G-quadruplexes.' 
_citation.year                      2021 
_citation.database_id_CSD           ? 
_citation.pdbx_database_id_DOI      10.1093/nar/gkaa1259 
_citation.pdbx_database_id_PubMed   33503265 
_citation.unpublished_flag          ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Das, P.'        1 ? 
primary 'Ngo, K.H.'      2 ? 
primary 'Winnerdy, F.R.' 3 ? 
primary 'Maity, A.'      4 ? 
primary 'Bakalar, B.'    5 ? 
primary 'Mechulam, Y.'   6 ? 
primary 'Schmitt, E.'    7 ? 
primary 'Phan, A.T.'     8 ? 
# 
_cell.angle_alpha                  90.000 
_cell.angle_alpha_esd              ? 
_cell.angle_beta                   115.870 
_cell.angle_beta_esd               ? 
_cell.angle_gamma                  90.000 
_cell.angle_gamma_esd              ? 
_cell.entry_id                     7D5D 
_cell.details                      ? 
_cell.formula_units_Z              ? 
_cell.length_a                     29.215 
_cell.length_a_esd                 ? 
_cell.length_b                     40.037 
_cell.length_b_esd                 ? 
_cell.length_c                     30.376 
_cell.length_c_esd                 ? 
_cell.volume                       ? 
_cell.volume_esd                   ? 
_cell.Z_PDB                        2 
_cell.reciprocal_angle_alpha       ? 
_cell.reciprocal_angle_beta        ? 
_cell.reciprocal_angle_gamma       ? 
_cell.reciprocal_angle_alpha_esd   ? 
_cell.reciprocal_angle_beta_esd    ? 
_cell.reciprocal_angle_gamma_esd   ? 
_cell.reciprocal_length_a          ? 
_cell.reciprocal_length_b          ? 
_cell.reciprocal_length_c          ? 
_cell.reciprocal_length_a_esd      ? 
_cell.reciprocal_length_b_esd      ? 
_cell.reciprocal_length_c_esd      ? 
_cell.pdbx_unique_axis             ? 
# 
_symmetry.entry_id                         7D5D 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                4 
_symmetry.space_group_name_Hall            ? 
_symmetry.space_group_name_H-M             'P 1 21 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 1xBulge-LHG4motif 8568.457 1   ? ? ? ? 
2 non-polymer syn SPERMINE          202.340  2   ? ? ? ? 
3 non-polymer syn 'POTASSIUM ION'   39.098   3   ? ? ? ? 
4 water       nat water             18.015   158 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       
;(DG)(DG)(DT)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DG)(DG)
(DT)(DG)(DG)(DT)(DG)(DT)(DT)
;
_entity_poly.pdbx_seq_one_letter_code_can   GGTGTGTGGTGGTGTGGTGGTGGTGTT 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DG n 
1 2  DG n 
1 3  DT n 
1 4  DG n 
1 5  DT n 
1 6  DG n 
1 7  DT n 
1 8  DG n 
1 9  DG n 
1 10 DT n 
1 11 DG n 
1 12 DG n 
1 13 DT n 
1 14 DG n 
1 15 DT n 
1 16 DG n 
1 17 DG n 
1 18 DT n 
1 19 DG n 
1 20 DG n 
1 21 DT n 
1 22 DG n 
1 23 DG n 
1 24 DT n 
1 25 DG n 
1 26 DT n 
1 27 DT n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       1 
_pdbx_entity_src_syn.pdbx_end_seq_num       27 
_pdbx_entity_src_syn.organism_scientific    'synthetic construct' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       32630 
_pdbx_entity_src_syn.details                ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    7D5D 
_struct_ref.pdbx_db_accession          7D5D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           1 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              7D5D 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 27 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             7D5D 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  27 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       27 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ? 'H2 O'            18.015  
K   non-polymer   . 'POTASSIUM ION'                      ? 'K 1'             39.098  
SPM non-polymer   . SPERMINE                             ? 'C10 H26 N4'      202.340 
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.entry_id                   7D5D 
_exptl.crystals_number            1 
_exptl.details                    ? 
_exptl.method                     'X-RAY DIFFRACTION' 
_exptl.method_details             ? 
# 
_exptl_crystal.colour                      ? 
_exptl_crystal.density_diffrn              ? 
_exptl_crystal.density_Matthews            1.87 
_exptl_crystal.density_method              ? 
_exptl_crystal.density_percent_sol         34.07 
_exptl_crystal.description                 ? 
_exptl_crystal.F_000                       ? 
_exptl_crystal.id                          1 
_exptl_crystal.preparation                 ? 
_exptl_crystal.size_max                    ? 
_exptl_crystal.size_mid                    ? 
_exptl_crystal.size_min                    ? 
_exptl_crystal.size_rad                    ? 
_exptl_crystal.colour_lustre               ? 
_exptl_crystal.colour_modifier             ? 
_exptl_crystal.colour_primary              ? 
_exptl_crystal.density_meas                ? 
_exptl_crystal.density_meas_esd            ? 
_exptl_crystal.density_meas_gt             ? 
_exptl_crystal.density_meas_lt             ? 
_exptl_crystal.density_meas_temp           ? 
_exptl_crystal.density_meas_temp_esd       ? 
_exptl_crystal.density_meas_temp_gt        ? 
_exptl_crystal.density_meas_temp_lt        ? 
_exptl_crystal.pdbx_crystal_image_url      ? 
_exptl_crystal.pdbx_crystal_image_format   ? 
_exptl_crystal.pdbx_mosaicity              ? 
_exptl_crystal.pdbx_mosaicity_esd          ? 
# 
_exptl_crystal_grow.apparatus       ? 
_exptl_crystal_grow.atmosphere      ? 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.details         ? 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.method_ref      ? 
_exptl_crystal_grow.pH              6.0 
_exptl_crystal_grow.pressure        ? 
_exptl_crystal_grow.pressure_esd    ? 
_exptl_crystal_grow.seeding         ? 
_exptl_crystal_grow.seeding_ref     ? 
_exptl_crystal_grow.temp            297 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.temp_esd        ? 
_exptl_crystal_grow.time            ? 
_exptl_crystal_grow.pdbx_details    
'0.04 M sodium cacodylate trihydrate pH 6.0, 55% v/v -2-methyl-2,4-pentanediol and 0.012 M spermine tetrahydrochloride' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.ambient_environment              ? 
_diffrn.ambient_temp                     100 
_diffrn.ambient_temp_details             ? 
_diffrn.ambient_temp_esd                 ? 
_diffrn.crystal_id                       1 
_diffrn.crystal_support                  ? 
_diffrn.crystal_treatment                ? 
_diffrn.details                          ? 
_diffrn.id                               1 
_diffrn.ambient_pressure                 ? 
_diffrn.ambient_pressure_esd             ? 
_diffrn.ambient_pressure_gt              ? 
_diffrn.ambient_pressure_lt              ? 
_diffrn.ambient_temp_gt                  ? 
_diffrn.ambient_temp_lt                  ? 
_diffrn.pdbx_serial_crystal_experiment   N 
# 
_diffrn_detector.details                      ? 
_diffrn_detector.detector                     PIXEL 
_diffrn_detector.diffrn_id                    1 
_diffrn_detector.type                         'DECTRIS EIGER X 9M' 
_diffrn_detector.area_resol_mean              ? 
_diffrn_detector.dtime                        ? 
_diffrn_detector.pdbx_frames_total            ? 
_diffrn_detector.pdbx_collection_time_total   ? 
_diffrn_detector.pdbx_collection_date         2017-09-10 
_diffrn_detector.pdbx_frequency               ? 
# 
_diffrn_radiation.collimation                      ? 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.filter_edge                      ? 
_diffrn_radiation.inhomogeneity                    ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.polarisn_norm                    ? 
_diffrn_radiation.polarisn_ratio                   ? 
_diffrn_radiation.probe                            ? 
_diffrn_radiation.type                             ? 
_diffrn_radiation.xray_symbol                      ? 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.pdbx_wavelength_list             ? 
_diffrn_radiation.pdbx_wavelength                  ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_analyzer                    ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.9793 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.current                     ? 
_diffrn_source.details                     ? 
_diffrn_source.diffrn_id                   1 
_diffrn_source.power                       ? 
_diffrn_source.size                        ? 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.target                      ? 
_diffrn_source.type                        'SOLEIL BEAMLINE PROXIMA 2' 
_diffrn_source.voltage                     ? 
_diffrn_source.take-off_angle              ? 
_diffrn_source.pdbx_wavelength_list        0.9793 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_synchrotron_beamline   'PROXIMA 2' 
_diffrn_source.pdbx_synchrotron_site       SOLEIL 
# 
_reflns.B_iso_Wilson_estimate            8.52 
_reflns.entry_id                         7D5D 
_reflns.data_reduction_details           ? 
_reflns.data_reduction_method            ? 
_reflns.d_resolution_high                1.18 
_reflns.d_resolution_low                 27.33 
_reflns.details                          ? 
_reflns.limit_h_max                      ? 
_reflns.limit_h_min                      ? 
_reflns.limit_k_max                      ? 
_reflns.limit_k_min                      ? 
_reflns.limit_l_max                      ? 
_reflns.limit_l_min                      ? 
_reflns.number_all                       ? 
_reflns.number_obs                       20747 
_reflns.observed_criterion               ? 
_reflns.observed_criterion_F_max         ? 
_reflns.observed_criterion_F_min         ? 
_reflns.observed_criterion_I_max         ? 
_reflns.observed_criterion_I_min         ? 
_reflns.observed_criterion_sigma_F       ? 
_reflns.observed_criterion_sigma_I       ? 
_reflns.percent_possible_obs             99.70 
_reflns.R_free_details                   ? 
_reflns.Rmerge_F_all                     ? 
_reflns.Rmerge_F_obs                     ? 
_reflns.Friedel_coverage                 ? 
_reflns.number_gt                        ? 
_reflns.threshold_expression             ? 
_reflns.pdbx_redundancy                  6.7 
_reflns.pdbx_Rmerge_I_obs                0.125 
_reflns.pdbx_Rmerge_I_all                ? 
_reflns.pdbx_Rsym_value                  ? 
_reflns.pdbx_netI_over_av_sigmaI         ? 
_reflns.pdbx_netI_over_sigmaI            9.00 
_reflns.pdbx_res_netI_over_av_sigmaI_2   ? 
_reflns.pdbx_res_netI_over_sigmaI_2      ? 
_reflns.pdbx_chi_squared                 ? 
_reflns.pdbx_scaling_rejects             ? 
_reflns.pdbx_d_res_high_opt              ? 
_reflns.pdbx_d_res_low_opt               ? 
_reflns.pdbx_d_res_opt_method            ? 
_reflns.phase_calculation_details        ? 
_reflns.pdbx_Rrim_I_all                  0.135 
_reflns.pdbx_Rpim_I_all                  0.052 
_reflns.pdbx_d_opt                       ? 
_reflns.pdbx_number_measured_all         ? 
_reflns.pdbx_diffrn_id                   1 
_reflns.pdbx_ordinal                     1 
_reflns.pdbx_CC_half                     0.996 
_reflns.pdbx_CC_star                     ? 
_reflns.pdbx_R_split                     ? 
# 
_reflns_shell.d_res_high                  1.182 
_reflns_shell.d_res_low                   1.224 
_reflns_shell.meanI_over_sigI_all         ? 
_reflns_shell.meanI_over_sigI_obs         ? 
_reflns_shell.number_measured_all         ? 
_reflns_shell.number_measured_obs         ? 
_reflns_shell.number_possible             ? 
_reflns_shell.number_unique_all           ? 
_reflns_shell.number_unique_obs           2060 
_reflns_shell.percent_possible_all        ? 
_reflns_shell.percent_possible_obs        ? 
_reflns_shell.Rmerge_F_all                ? 
_reflns_shell.Rmerge_F_obs                ? 
_reflns_shell.Rmerge_I_all                ? 
_reflns_shell.Rmerge_I_obs                0.938 
_reflns_shell.meanI_over_sigI_gt          ? 
_reflns_shell.meanI_over_uI_all           ? 
_reflns_shell.meanI_over_uI_gt            ? 
_reflns_shell.number_measured_gt          ? 
_reflns_shell.number_unique_gt            ? 
_reflns_shell.percent_possible_gt         ? 
_reflns_shell.Rmerge_F_gt                 ? 
_reflns_shell.Rmerge_I_gt                 ? 
_reflns_shell.pdbx_redundancy             ? 
_reflns_shell.pdbx_Rsym_value             ? 
_reflns_shell.pdbx_chi_squared            ? 
_reflns_shell.pdbx_netI_over_sigmaI_all   ? 
_reflns_shell.pdbx_netI_over_sigmaI_obs   ? 
_reflns_shell.pdbx_Rrim_I_all             1.028 
_reflns_shell.pdbx_Rpim_I_all             0.415 
_reflns_shell.pdbx_rejects                ? 
_reflns_shell.pdbx_ordinal                1 
_reflns_shell.pdbx_diffrn_id              1 
_reflns_shell.pdbx_CC_half                0.5 
_reflns_shell.pdbx_CC_star                ? 
_reflns_shell.pdbx_R_split                ? 
# 
_refine.aniso_B[1][1]                            -0.2700 
_refine.aniso_B[1][2]                            0.0000 
_refine.aniso_B[1][3]                            0.3000 
_refine.aniso_B[2][2]                            -0.5800 
_refine.aniso_B[2][3]                            -0.0000 
_refine.aniso_B[3][3]                            0.3800 
_refine.B_iso_max                                102.280 
_refine.B_iso_mean                               14.7860 
_refine.B_iso_min                                5.130 
_refine.correlation_coeff_Fo_to_Fc               0.9850 
_refine.correlation_coeff_Fo_to_Fc_free          0.9710 
_refine.details                                  
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES      : REFINED INDIVIDUALLY' 
_refine.diff_density_max                         ? 
_refine.diff_density_max_esd                     ? 
_refine.diff_density_min                         ? 
_refine.diff_density_min_esd                     ? 
_refine.diff_density_rms                         ? 
_refine.diff_density_rms_esd                     ? 
_refine.entry_id                                 7D5D 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.ls_abs_structure_details                 ? 
_refine.ls_abs_structure_Flack                   ? 
_refine.ls_abs_structure_Flack_esd               ? 
_refine.ls_abs_structure_Rogers                  ? 
_refine.ls_abs_structure_Rogers_esd              ? 
_refine.ls_d_res_high                            1.1800 
_refine.ls_d_res_low                             27.3300 
_refine.ls_extinction_coef                       ? 
_refine.ls_extinction_coef_esd                   ? 
_refine.ls_extinction_expression                 ? 
_refine.ls_extinction_method                     ? 
_refine.ls_goodness_of_fit_all                   ? 
_refine.ls_goodness_of_fit_all_esd               ? 
_refine.ls_goodness_of_fit_obs                   ? 
_refine.ls_goodness_of_fit_obs_esd               ? 
_refine.ls_hydrogen_treatment                    ? 
_refine.ls_matrix_type                           ? 
_refine.ls_number_constraints                    ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_reflns_all                     ? 
_refine.ls_number_reflns_obs                     19779 
_refine.ls_number_reflns_R_free                  921 
_refine.ls_number_reflns_R_work                  ? 
_refine.ls_number_restraints                     ? 
_refine.ls_percent_reflns_obs                    99.7700 
_refine.ls_percent_reflns_R_free                 4.4000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          0.1212 
_refine.ls_R_factor_R_free                       0.1679 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_R_factor_R_work                       0.1191 
_refine.ls_R_Fsqd_factor_obs                     ? 
_refine.ls_R_I_factor_obs                        ? 
_refine.ls_redundancy_reflns_all                 ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.ls_restrained_S_all                      ? 
_refine.ls_restrained_S_obs                      ? 
_refine.ls_shift_over_esd_max                    ? 
_refine.ls_shift_over_esd_mean                   ? 
_refine.ls_structure_factor_coef                 ? 
_refine.ls_weighting_details                     ? 
_refine.ls_weighting_scheme                      ? 
_refine.ls_wR_factor_all                         ? 
_refine.ls_wR_factor_obs                         ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.pdbx_R_complete                          ? 
_refine.ls_R_factor_gt                           ? 
_refine.ls_goodness_of_fit_gt                    ? 
_refine.ls_goodness_of_fit_ref                   ? 
_refine.ls_shift_over_su_max                     ? 
_refine.ls_shift_over_su_max_lt                  ? 
_refine.ls_shift_over_su_mean                    ? 
_refine.ls_shift_over_su_mean_lt                 ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          0.000 
_refine.pdbx_ls_sigma_Fsqd                       ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_starting_model                      4U5M 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_overall_ESU_R                       0.0360 
_refine.pdbx_overall_ESU_R_Free                  0.0400 
_refine.pdbx_solvent_vdw_probe_radii             1.2000 
_refine.pdbx_solvent_ion_probe_radii             0.8000 
_refine.pdbx_solvent_shrinkage_radii             0.8000 
_refine.pdbx_real_space_R                        ? 
_refine.pdbx_density_correlation                 ? 
_refine.pdbx_pd_number_of_powder_patterns        ? 
_refine.pdbx_pd_number_of_points                 ? 
_refine.pdbx_pd_meas_number_of_points            ? 
_refine.pdbx_pd_proc_ls_prof_R_factor            ? 
_refine.pdbx_pd_proc_ls_prof_wR_factor           ? 
_refine.pdbx_pd_Marquardt_correlation_coeff      ? 
_refine.pdbx_pd_Fsqrd_R_factor                   ? 
_refine.pdbx_pd_ls_matrix_band_width             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_diffrn_id                           1 
_refine.overall_SU_B                             1.7240 
_refine.overall_SU_ML                            0.0340 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_average_fsc_overall                 ? 
_refine.pdbx_average_fsc_work                    ? 
_refine.pdbx_average_fsc_free                    ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         final 
_refine_hist.details                          ? 
_refine_hist.d_res_high                       1.1800 
_refine_hist.d_res_low                        27.3300 
_refine_hist.number_atoms_solvent             158 
_refine_hist.number_atoms_total               786 
_refine_hist.number_reflns_all                ? 
_refine_hist.number_reflns_obs                ? 
_refine_hist.number_reflns_R_free             ? 
_refine_hist.number_reflns_R_work             ? 
_refine_hist.R_factor_all                     ? 
_refine_hist.R_factor_obs                     ? 
_refine_hist.R_factor_R_free                  ? 
_refine_hist.R_factor_R_work                  ? 
_refine_hist.pdbx_number_residues_total       27 
_refine_hist.pdbx_B_iso_mean_ligand           21.13 
_refine_hist.pdbx_B_iso_mean_solvent          33.27 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   569 
_refine_hist.pdbx_number_atoms_ligand         59 
_refine_hist.pdbx_number_atoms_lipid          ? 
_refine_hist.pdbx_number_atoms_carb           ? 
_refine_hist.pdbx_pseudo_atom_details         ? 
# 
loop_
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.criterion 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.number 
_refine_ls_restr.rejects 
_refine_ls_restr.type 
_refine_ls_restr.weight 
_refine_ls_restr.pdbx_restraint_function 
'X-RAY DIFFRACTION' ? 0.015  0.011 690  ? r_bond_refined_d     ? ? 
'X-RAY DIFFRACTION' ? 0.008  0.020 413  ? r_bond_other_d       ? ? 
'X-RAY DIFFRACTION' ? 1.979  1.235 1038 ? r_angle_refined_deg  ? ? 
'X-RAY DIFFRACTION' ? 2.081  3.000 976  ? r_angle_other_deg    ? ? 
'X-RAY DIFFRACTION' ? 0.108  0.200 81   ? r_chiral_restr       ? ? 
'X-RAY DIFFRACTION' ? 0.041  0.020 332  ? r_gen_planes_refined ? ? 
'X-RAY DIFFRACTION' ? 0.008  0.020 116  ? r_gen_planes_other   ? ? 
'X-RAY DIFFRACTION' ? 5.181  3.000 1103 ? r_rigid_bond_restr   ? ? 
'X-RAY DIFFRACTION' ? 34.543 5.000 93   ? r_sphericity_free    ? ? 
'X-RAY DIFFRACTION' ? 12.325 5.000 1106 ? r_sphericity_bonded  ? ? 
# 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.d_res_high                       1.1820 
_refine_ls_shell.d_res_low                        1.2120 
_refine_ls_shell.number_reflns_all                1540 
_refine_ls_shell.number_reflns_obs                ? 
_refine_ls_shell.number_reflns_R_free             72 
_refine_ls_shell.number_reflns_R_work             1468 
_refine_ls_shell.percent_reflns_obs               100.0000 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.R_factor_obs                     ? 
_refine_ls_shell.R_factor_R_free                  0.2000 
_refine_ls_shell.R_factor_R_free_error            0.0000 
_refine_ls_shell.R_factor_R_work                  0.1800 
_refine_ls_shell.redundancy_reflns_all            ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.wR_factor_all                    ? 
_refine_ls_shell.wR_factor_obs                    ? 
_refine_ls_shell.wR_factor_R_free                 ? 
_refine_ls_shell.wR_factor_R_work                 ? 
_refine_ls_shell.pdbx_R_complete                  ? 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.pdbx_phase_error                 ? 
_refine_ls_shell.pdbx_fsc_work                    ? 
_refine_ls_shell.pdbx_fsc_free                    ? 
# 
_struct.entry_id                     7D5D 
_struct.title                        'Left-handed G-quadruplex containing one bulge' 
_struct.pdbx_model_details           ? 
_struct.pdbx_formula_weight          ? 
_struct.pdbx_formula_weight_method   ? 
_struct.pdbx_model_type_details      ? 
_struct.pdbx_CASP_flag               N 
# 
_struct_keywords.entry_id        7D5D 
_struct_keywords.text            'Left-handed, G-quadruplex, DNA, Bulge, Z-G4' 
_struct_keywords.pdbx_keywords   DNA 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 2 ? 
D N N 3 ? 
E N N 3 ? 
F N N 3 ? 
G N N 4 ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DG 1  O6 ? ? ? 1_555 F K  .  K  ? ? A DG 1  A K  105 1_555 ? ? ? ? ? ? ?           2.755 ? ? 
metalc2  metalc ? ? A DG 2  O6 ? ? ? 1_555 E K  .  K  ? ? A DG 2  A K  104 1_555 ? ? ? ? ? ? ?           2.830 ? ? 
metalc3  metalc ? ? A DG 2  O6 ? ? ? 1_555 F K  .  K  ? ? A DG 2  A K  105 1_555 ? ? ? ? ? ? ?           2.824 ? ? 
metalc4  metalc ? ? A DG 4  O6 ? ? ? 1_555 F K  .  K  ? ? A DG 4  A K  105 1_555 ? ? ? ? ? ? ?           2.714 ? ? 
metalc5  metalc ? ? A DG 6  O6 ? ? ? 1_555 E K  .  K  ? ? A DG 6  A K  104 1_555 ? ? ? ? ? ? ?           2.832 ? ? 
metalc6  metalc ? ? A DG 6  O6 ? ? ? 1_555 F K  .  K  ? ? A DG 6  A K  105 1_555 ? ? ? ? ? ? ?           2.902 ? ? 
metalc7  metalc ? ? A DG 8  O6 ? ? ? 1_555 F K  .  K  ? ? A DG 8  A K  105 1_555 ? ? ? ? ? ? ?           2.724 ? ? 
metalc8  metalc ? ? A DG 9  O6 ? ? ? 1_555 E K  .  K  ? ? A DG 9  A K  104 1_555 ? ? ? ? ? ? ?           2.804 ? ? 
metalc9  metalc ? ? A DG 9  O6 ? ? ? 1_555 F K  .  K  ? ? A DG 9  A K  105 1_555 ? ? ? ? ? ? ?           2.887 ? ? 
metalc10 metalc ? ? A DG 11 O6 ? ? ? 1_555 F K  .  K  ? ? A DG 11 A K  105 1_555 ? ? ? ? ? ? ?           2.727 ? ? 
metalc11 metalc ? ? A DG 12 O6 ? ? ? 1_555 E K  .  K  ? ? A DG 12 A K  104 1_555 ? ? ? ? ? ? ?           2.848 ? ? 
metalc12 metalc ? ? A DG 12 O6 ? ? ? 1_555 F K  .  K  ? ? A DG 12 A K  105 1_555 ? ? ? ? ? ? ?           2.867 ? ? 
metalc13 metalc ? ? A DG 14 O6 ? ? ? 1_555 D K  .  K  ? ? A DG 14 A K  103 1_555 ? ? ? ? ? ? ?           2.800 ? ? 
metalc14 metalc ? ? A DG 14 O6 ? ? ? 1_555 E K  .  K  ? ? A DG 14 A K  104 1_555 ? ? ? ? ? ? ?           2.784 ? ? 
metalc15 metalc ? ? A DG 16 O6 ? ? ? 1_555 D K  .  K  ? ? A DG 16 A K  103 1_555 ? ? ? ? ? ? ?           2.821 ? ? 
metalc16 metalc ? ? A DG 17 O6 ? ? ? 1_555 D K  .  K  ? ? A DG 17 A K  103 1_555 ? ? ? ? ? ? ?           2.818 ? ? 
metalc17 metalc ? ? A DG 17 O6 ? ? ? 1_555 E K  .  K  ? ? A DG 17 A K  104 1_555 ? ? ? ? ? ? ?           2.894 ? ? 
metalc18 metalc ? ? A DG 19 O6 ? ? ? 1_555 D K  .  K  ? ? A DG 19 A K  103 1_555 ? ? ? ? ? ? ?           2.775 ? ? 
metalc19 metalc ? ? A DG 20 O6 ? ? ? 1_555 D K  .  K  ? ? A DG 20 A K  103 1_555 ? ? ? ? ? ? ?           2.924 ? ? 
metalc20 metalc ? ? A DG 20 O6 ? ? ? 1_555 E K  .  K  ? ? A DG 20 A K  104 1_555 ? ? ? ? ? ? ?           2.794 ? ? 
metalc21 metalc ? ? A DG 22 O6 ? ? ? 1_555 D K  .  K  ? ? A DG 22 A K  103 1_555 ? ? ? ? ? ? ?           2.724 ? ? 
metalc22 metalc ? ? A DG 23 O6 ? ? ? 1_555 D K  .  K  ? ? A DG 23 A K  103 1_555 ? ? ? ? ? ? ?           2.921 ? ? 
metalc23 metalc ? ? A DG 23 O6 ? ? ? 1_555 E K  .  K  ? ? A DG 23 A K  104 1_555 ? ? ? ? ? ? ?           2.812 ? ? 
metalc24 metalc ? ? A DG 25 O6 ? ? ? 1_555 D K  .  K  ? ? A DG 25 A K  103 1_555 ? ? ? ? ? ? ?           2.780 ? ? 
hydrog1  hydrog ? ? A DG 1  N1 ? ? ? 1_555 A DG 4  O6 ? ? A DG 1  A DG 4   1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog2  hydrog ? ? A DG 1  N2 ? ? ? 1_555 A DG 4  N7 ? ? A DG 1  A DG 4   1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog3  hydrog ? ? A DG 1  N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 1  A DG 11  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog4  hydrog ? ? A DG 1  O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 1  A DG 11  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog5  hydrog ? ? A DG 2  N1 ? ? ? 1_555 A DG 6  O6 ? ? A DG 2  A DG 6   1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog6  hydrog ? ? A DG 2  N2 ? ? ? 1_555 A DG 6  N7 ? ? A DG 2  A DG 6   1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog7  hydrog ? ? A DG 2  N7 ? ? ? 1_555 A DG 12 N2 ? ? A DG 2  A DG 12  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog8  hydrog ? ? A DG 2  O6 ? ? ? 1_555 A DG 12 N1 ? ? A DG 2  A DG 12  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog9  hydrog ? ? A DG 4  N1 ? ? ? 1_555 A DG 8  O6 ? ? A DG 4  A DG 8   1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog10 hydrog ? ? A DG 4  N2 ? ? ? 1_555 A DG 8  N7 ? ? A DG 4  A DG 8   1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog11 hydrog ? ? A DG 6  N1 ? ? ? 1_555 A DG 9  O6 ? ? A DG 6  A DG 9   1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog12 hydrog ? ? A DG 6  N2 ? ? ? 1_555 A DG 9  N7 ? ? A DG 6  A DG 9   1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog13 hydrog ? ? A DG 8  N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 8  A DG 11  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog14 hydrog ? ? A DG 8  N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 8  A DG 11  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog15 hydrog ? ? A DG 9  N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 9  A DG 12  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog16 hydrog ? ? A DG 9  N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 9  A DG 12  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog17 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 14 A DG 17  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog18 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 14 A DG 17  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog19 hydrog ? ? A DG 14 N7 ? ? ? 1_555 A DG 23 N2 ? ? A DG 14 A DG 23  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog20 hydrog ? ? A DG 14 O6 ? ? ? 1_555 A DG 23 N1 ? ? A DG 14 A DG 23  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog21 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 16 A DG 19  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog22 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 16 A DG 19  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog23 hydrog ? ? A DG 16 N7 ? ? ? 1_555 A DG 25 N2 ? ? A DG 16 A DG 25  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog24 hydrog ? ? A DG 16 O6 ? ? ? 1_555 A DG 25 N1 ? ? A DG 16 A DG 25  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog25 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 17 A DG 20  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog26 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 17 A DG 20  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog27 hydrog ? ? A DG 19 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 19 A DG 22  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog28 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 19 A DG 22  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog29 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 20 A DG 23  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog30 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 20 A DG 23  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog31 hydrog ? ? A DG 22 N1 ? ? ? 1_555 A DG 25 O6 ? ? A DG 22 A DG 25  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
hydrog32 hydrog ? ? A DG 22 N2 ? ? ? 1_555 A DG 25 N7 ? ? A DG 22 A DG 25  1_555 ? ? ? ? ? ? TYPE_6_PAIR ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
_atom_sites.entry_id                    7D5D 
_atom_sites.Cartn_transf_matrix[1][1]   ? 
_atom_sites.Cartn_transf_matrix[1][2]   ? 
_atom_sites.Cartn_transf_matrix[1][3]   ? 
_atom_sites.Cartn_transf_matrix[2][1]   ? 
_atom_sites.Cartn_transf_matrix[2][2]   ? 
_atom_sites.Cartn_transf_matrix[2][3]   ? 
_atom_sites.Cartn_transf_matrix[3][1]   ? 
_atom_sites.Cartn_transf_matrix[3][2]   ? 
_atom_sites.Cartn_transf_matrix[3][3]   ? 
_atom_sites.Cartn_transf_vector[1]      ? 
_atom_sites.Cartn_transf_vector[2]      ? 
_atom_sites.Cartn_transf_vector[3]      ? 
_atom_sites.fract_transf_matrix[1][1]   0.034229 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.016598 
_atom_sites.fract_transf_matrix[2][1]   -0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.024977 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   -0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.036587 
_atom_sites.fract_transf_vector[1]      0.000000 
_atom_sites.fract_transf_vector[2]      0.000000 
_atom_sites.fract_transf_vector[3]      0.000000 
_atom_sites.solution_primary            ? 
_atom_sites.solution_secondary          ? 
_atom_sites.solution_hydrogens          ? 
_atom_sites.special_details             ? 
# 
loop_
_atom_type.symbol 
C 
K 
N 
O 
P 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DG 1  1  1  DG DG A . n 
A 1 2  DG 2  2  2  DG DG A . n 
A 1 3  DT 3  3  3  DT DT A . n 
A 1 4  DG 4  4  4  DG DG A . n 
A 1 5  DT 5  5  5  DT DT A . n 
A 1 6  DG 6  6  6  DG DG A . n 
A 1 7  DT 7  7  7  DT DT A . n 
A 1 8  DG 8  8  8  DG DG A . n 
A 1 9  DG 9  9  9  DG DG A . n 
A 1 10 DT 10 10 10 DT DT A . n 
A 1 11 DG 11 11 11 DG DG A . n 
A 1 12 DG 12 12 12 DG DG A . n 
A 1 13 DT 13 13 13 DT DT A . n 
A 1 14 DG 14 14 14 DG DG A . n 
A 1 15 DT 15 15 15 DT DT A . n 
A 1 16 DG 16 16 16 DG DG A . n 
A 1 17 DG 17 17 17 DG DG A . n 
A 1 18 DT 18 18 18 DT DT A . n 
A 1 19 DG 19 19 19 DG DG A . n 
A 1 20 DG 20 20 20 DG DG A . n 
A 1 21 DT 21 21 21 DT DT A . n 
A 1 22 DG 22 22 22 DG DG A . n 
A 1 23 DG 23 23 23 DG DG A . n 
A 1 24 DT 24 24 24 DT DT A . n 
A 1 25 DG 25 25 25 DG DG A . n 
A 1 26 DT 26 26 26 DT DT A . n 
A 1 27 DT 27 27 27 DT DT A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 SPM 1   101 1   SPM SPM A . 
C 2 SPM 1   102 2   SPM SPM A . 
D 3 K   1   103 1   K   K   A . 
E 3 K   1   104 2   K   K   A . 
F 3 K   1   105 3   K   K   A . 
G 4 HOH 1   201 174 HOH HOH A . 
G 4 HOH 2   202 162 HOH HOH A . 
G 4 HOH 3   203 231 HOH HOH A . 
G 4 HOH 4   204 84  HOH HOH A . 
G 4 HOH 5   205 122 HOH HOH A . 
G 4 HOH 6   206 23  HOH HOH A . 
G 4 HOH 7   207 188 HOH HOH A . 
G 4 HOH 8   208 138 HOH HOH A . 
G 4 HOH 9   209 63  HOH HOH A . 
G 4 HOH 10  210 144 HOH HOH A . 
G 4 HOH 11  211 136 HOH HOH A . 
G 4 HOH 12  212 28  HOH HOH A . 
G 4 HOH 13  213 154 HOH HOH A . 
G 4 HOH 14  214 38  HOH HOH A . 
G 4 HOH 15  215 9   HOH HOH A . 
G 4 HOH 16  216 24  HOH HOH A . 
G 4 HOH 17  217 236 HOH HOH A . 
G 4 HOH 18  218 147 HOH HOH A . 
G 4 HOH 19  219 11  HOH HOH A . 
G 4 HOH 20  220 19  HOH HOH A . 
G 4 HOH 21  221 211 HOH HOH A . 
G 4 HOH 22  222 80  HOH HOH A . 
G 4 HOH 23  223 106 HOH HOH A . 
G 4 HOH 24  224 170 HOH HOH A . 
G 4 HOH 25  225 130 HOH HOH A . 
G 4 HOH 26  226 143 HOH HOH A . 
G 4 HOH 27  227 163 HOH HOH A . 
G 4 HOH 28  228 184 HOH HOH A . 
G 4 HOH 29  229 192 HOH HOH A . 
G 4 HOH 30  230 127 HOH HOH A . 
G 4 HOH 31  231 107 HOH HOH A . 
G 4 HOH 32  232 104 HOH HOH A . 
G 4 HOH 33  233 62  HOH HOH A . 
G 4 HOH 34  234 16  HOH HOH A . 
G 4 HOH 35  235 171 HOH HOH A . 
G 4 HOH 36  236 14  HOH HOH A . 
G 4 HOH 37  237 139 HOH HOH A . 
G 4 HOH 38  238 94  HOH HOH A . 
G 4 HOH 39  239 146 HOH HOH A . 
G 4 HOH 40  240 193 HOH HOH A . 
G 4 HOH 41  241 35  HOH HOH A . 
G 4 HOH 42  242 156 HOH HOH A . 
G 4 HOH 43  243 198 HOH HOH A . 
G 4 HOH 44  244 114 HOH HOH A . 
G 4 HOH 45  245 133 HOH HOH A . 
G 4 HOH 46  246 155 HOH HOH A . 
G 4 HOH 47  247 50  HOH HOH A . 
G 4 HOH 48  248 169 HOH HOH A . 
G 4 HOH 49  249 44  HOH HOH A . 
G 4 HOH 50  250 5   HOH HOH A . 
G 4 HOH 51  251 161 HOH HOH A . 
G 4 HOH 52  252 151 HOH HOH A . 
G 4 HOH 53  253 34  HOH HOH A . 
G 4 HOH 54  254 26  HOH HOH A . 
G 4 HOH 55  255 67  HOH HOH A . 
G 4 HOH 56  256 30  HOH HOH A . 
G 4 HOH 57  257 42  HOH HOH A . 
G 4 HOH 58  258 166 HOH HOH A . 
G 4 HOH 59  259 17  HOH HOH A . 
G 4 HOH 60  260 1   HOH HOH A . 
G 4 HOH 61  261 73  HOH HOH A . 
G 4 HOH 62  262 140 HOH HOH A . 
G 4 HOH 63  263 74  HOH HOH A . 
G 4 HOH 64  264 92  HOH HOH A . 
G 4 HOH 65  265 32  HOH HOH A . 
G 4 HOH 66  266 145 HOH HOH A . 
G 4 HOH 67  267 12  HOH HOH A . 
G 4 HOH 68  268 52  HOH HOH A . 
G 4 HOH 69  269 232 HOH HOH A . 
G 4 HOH 70  270 189 HOH HOH A . 
G 4 HOH 71  271 176 HOH HOH A . 
G 4 HOH 72  272 7   HOH HOH A . 
G 4 HOH 73  273 152 HOH HOH A . 
G 4 HOH 74  274 58  HOH HOH A . 
G 4 HOH 75  275 110 HOH HOH A . 
G 4 HOH 76  276 81  HOH HOH A . 
G 4 HOH 77  277 137 HOH HOH A . 
G 4 HOH 78  278 51  HOH HOH A . 
G 4 HOH 79  279 85  HOH HOH A . 
G 4 HOH 80  280 178 HOH HOH A . 
G 4 HOH 81  281 238 HOH HOH A . 
G 4 HOH 82  282 69  HOH HOH A . 
G 4 HOH 83  283 49  HOH HOH A . 
G 4 HOH 84  284 36  HOH HOH A . 
G 4 HOH 85  285 29  HOH HOH A . 
G 4 HOH 86  286 66  HOH HOH A . 
G 4 HOH 87  287 218 HOH HOH A . 
G 4 HOH 88  288 88  HOH HOH A . 
G 4 HOH 89  289 132 HOH HOH A . 
G 4 HOH 90  290 57  HOH HOH A . 
G 4 HOH 91  291 186 HOH HOH A . 
G 4 HOH 92  292 6   HOH HOH A . 
G 4 HOH 93  293 55  HOH HOH A . 
G 4 HOH 94  294 196 HOH HOH A . 
G 4 HOH 95  295 221 HOH HOH A . 
G 4 HOH 96  296 22  HOH HOH A . 
G 4 HOH 97  297 123 HOH HOH A . 
G 4 HOH 98  298 149 HOH HOH A . 
G 4 HOH 99  299 45  HOH HOH A . 
G 4 HOH 100 300 8   HOH HOH A . 
G 4 HOH 101 301 148 HOH HOH A . 
G 4 HOH 102 302 70  HOH HOH A . 
G 4 HOH 103 303 4   HOH HOH A . 
G 4 HOH 104 304 93  HOH HOH A . 
G 4 HOH 105 305 197 HOH HOH A . 
G 4 HOH 106 306 157 HOH HOH A . 
G 4 HOH 107 307 27  HOH HOH A . 
G 4 HOH 108 308 59  HOH HOH A . 
G 4 HOH 109 309 91  HOH HOH A . 
G 4 HOH 110 310 142 HOH HOH A . 
G 4 HOH 111 311 97  HOH HOH A . 
G 4 HOH 112 312 112 HOH HOH A . 
G 4 HOH 113 313 75  HOH HOH A . 
G 4 HOH 114 314 190 HOH HOH A . 
G 4 HOH 115 315 222 HOH HOH A . 
G 4 HOH 116 316 33  HOH HOH A . 
G 4 HOH 117 317 167 HOH HOH A . 
G 4 HOH 118 318 31  HOH HOH A . 
G 4 HOH 119 319 150 HOH HOH A . 
G 4 HOH 120 320 120 HOH HOH A . 
G 4 HOH 121 321 90  HOH HOH A . 
G 4 HOH 122 322 95  HOH HOH A . 
G 4 HOH 123 323 134 HOH HOH A . 
G 4 HOH 124 324 177 HOH HOH A . 
G 4 HOH 125 325 125 HOH HOH A . 
G 4 HOH 126 326 43  HOH HOH A . 
G 4 HOH 127 327 129 HOH HOH A . 
G 4 HOH 128 328 115 HOH HOH A . 
G 4 HOH 129 329 77  HOH HOH A . 
G 4 HOH 130 330 40  HOH HOH A . 
G 4 HOH 131 331 181 HOH HOH A . 
G 4 HOH 132 332 54  HOH HOH A . 
G 4 HOH 133 333 99  HOH HOH A . 
G 4 HOH 134 334 102 HOH HOH A . 
G 4 HOH 135 335 20  HOH HOH A . 
G 4 HOH 136 336 98  HOH HOH A . 
G 4 HOH 137 337 234 HOH HOH A . 
G 4 HOH 138 338 187 HOH HOH A . 
G 4 HOH 139 339 65  HOH HOH A . 
G 4 HOH 140 340 119 HOH HOH A . 
G 4 HOH 141 341 82  HOH HOH A . 
G 4 HOH 142 342 105 HOH HOH A . 
G 4 HOH 143 343 101 HOH HOH A . 
G 4 HOH 144 344 219 HOH HOH A . 
G 4 HOH 145 345 158 HOH HOH A . 
G 4 HOH 146 346 15  HOH HOH A . 
G 4 HOH 147 347 214 HOH HOH A . 
G 4 HOH 148 348 237 HOH HOH A . 
G 4 HOH 149 349 201 HOH HOH A . 
G 4 HOH 150 350 216 HOH HOH A . 
G 4 HOH 151 351 153 HOH HOH A . 
G 4 HOH 152 352 71  HOH HOH A . 
G 4 HOH 153 353 233 HOH HOH A . 
G 4 HOH 154 354 228 HOH HOH A . 
G 4 HOH 155 355 128 HOH HOH A . 
G 4 HOH 156 356 185 HOH HOH A . 
G 4 HOH 157 357 25  HOH HOH A . 
G 4 HOH 158 358 78  HOH HOH A . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   monomeric 
_pdbx_struct_assembly.oligomeric_count     1 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 1320 ? 
1 MORE         1    ? 
1 'SSA (A^2)'  4250 ? 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O6 ? A DG 1  ? A DG 1  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 2  ? A DG 2  ? 1_555 80.4  ? 
2  O6 ? A DG 1  ? A DG 1  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 4  ? A DG 4  ? 1_555 74.3  ? 
3  O6 ? A DG 2  ? A DG 2  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 4  ? A DG 4  ? 1_555 87.0  ? 
4  O6 ? A DG 1  ? A DG 1  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 6  ? A DG 6  ? 1_555 135.4 ? 
5  O6 ? A DG 2  ? A DG 2  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 6  ? A DG 6  ? 1_555 67.3  ? 
6  O6 ? A DG 4  ? A DG 4  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 6  ? A DG 6  ? 1_555 74.0  ? 
7  O6 ? A DG 1  ? A DG 1  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 8  ? A DG 8  ? 1_555 111.5 ? 
8  O6 ? A DG 2  ? A DG 2  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 8  ? A DG 8  ? 1_555 152.0 ? 
9  O6 ? A DG 4  ? A DG 4  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 8  ? A DG 8  ? 1_555 73.1  ? 
10 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 8  ? A DG 8  ? 1_555 88.1  ? 
11 O6 ? A DG 1  ? A DG 1  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 9  ? A DG 9  ? 1_555 155.9 ? 
12 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 9  ? A DG 9  ? 1_555 102.1 ? 
13 O6 ? A DG 4  ? A DG 4  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 9  ? A DG 9  ? 1_555 129.5 ? 
14 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 9  ? A DG 9  ? 1_555 64.8  ? 
15 O6 ? A DG 8  ? A DG 8  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 9  ? A DG 9  ? 1_555 77.4  ? 
16 O6 ? A DG 1  ? A DG 1  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 70.9  ? 
17 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 133.4 ? 
18 O6 ? A DG 4  ? A DG 4  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 117.9 ? 
19 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 153.3 ? 
20 O6 ? A DG 8  ? A DG 8  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 74.3  ? 
21 O6 ? A DG 9  ? A DG 9  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 91.4  ? 
22 O6 ? A DG 1  ? A DG 1  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 92.2  ? 
23 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 68.2  ? 
24 O6 ? A DG 4  ? A DG 4  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 153.5 ? 
25 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 102.8 ? 
26 O6 ? A DG 8  ? A DG 8  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 133.3 ? 
27 O6 ? A DG 9  ? A DG 9  ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 67.4  ? 
28 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? F K . ? A K 105 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 76.9  ? 
29 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 6  ? A DG 6  ? 1_555 68.2  ? 
30 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 9  ? A DG 9  ? 1_555 104.1 ? 
31 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 9  ? A DG 9  ? 1_555 66.8  ? 
32 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 68.3  ? 
33 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 105.0 ? 
34 O6 ? A DG 9  ? A DG 9  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 68.7  ? 
35 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 89.7  ? 
36 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 152.6 ? 
37 O6 ? A DG 9  ? A DG 9  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 137.2 ? 
38 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 79.8  ? 
39 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 151.4 ? 
40 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 138.1 ? 
41 O6 ? A DG 9  ? A DG 9  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 83.6  ? 
42 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 89.9  ? 
43 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 67.7  ? 
44 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 138.8 ? 
45 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 84.7  ? 
46 O6 ? A DG 9  ? A DG 9  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 92.0  ? 
47 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 151.7 ? 
48 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 103.9 ? 
49 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 66.7  ? 
50 O6 ? A DG 2  ? A DG 2  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 82.0  ? 
51 O6 ? A DG 6  ? A DG 6  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 92.5  ? 
52 O6 ? A DG 9  ? A DG 9  ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 153.2 ? 
53 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 135.9 ? 
54 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 67.7  ? 
55 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 103.6 ? 
56 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 68.3  ? 
57 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 95.6  ? 
58 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 68.5  ? 
59 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 80.5  ? 
60 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 157.9 ? 
61 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 71.3  ? 
62 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 91.4  ? 
63 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 100.2 ? 
64 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 133.9 ? 
65 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 66.0  ? 
66 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 78.5  ? 
67 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 129.8 ? 
68 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 109.7 ? 
69 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 155.6 ? 
70 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 72.2  ? 
71 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 92.5  ? 
72 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 66.0  ? 
73 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 157.5 ? 
74 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 102.8 ? 
75 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 130.2 ? 
76 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 65.2  ? 
77 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 76.4  ? 
78 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 74.8  ? 
79 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 71.3  ? 
80 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 130.7 ? 
81 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 115.4 ? 
82 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 154.7 ? 
83 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 73.6  ? 
84 O6 ? A DG 23 ? A DG 23 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 90.7  ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2021-02-10 
2 'Structure model' 1 1 2021-03-03 
3 'Structure model' 1 2 2023-11-29 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Data collection'        
3 3 'Structure model' 'Database references'    
4 3 'Structure model' 'Refinement description' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 2 'Structure model' citation                      
2 3 'Structure model' chem_comp_atom                
3 3 'Structure model' chem_comp_bond                
4 3 'Structure model' database_2                    
5 3 'Structure model' pdbx_initial_refinement_model 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 2 'Structure model' '_citation.journal_volume'            
2 2 'Structure model' '_citation.page_first'                
3 2 'Structure model' '_citation.page_last'                 
4 3 'Structure model' '_database_2.pdbx_DOI'                
5 3 'Structure model' '_database_2.pdbx_database_accession' 
# 
loop_
_space_group_symop.id 
_space_group_symop.operation_xyz 
1 x,y,z       
2 -x,y+1/2,-z 
# 
loop_
_software.citation_id 
_software.classification 
_software.compiler_name 
_software.compiler_version 
_software.contact_author 
_software.contact_author_email 
_software.date 
_software.description 
_software.dependencies 
_software.hardware 
_software.language 
_software.location 
_software.mods 
_software.name 
_software.os 
_software.os_version 
_software.type 
_software.version 
_software.pdbx_ordinal 
? refinement       ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS    ? ? ? .        2 
? 'data scaling'   ? ? ? ? ? ? ? ? ? ? ? XDS    ? ? ? .        3 
? phasing          ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? .        4 
# 
_pdbx_entry_details.entry_id                 7D5D 
_pdbx_entry_details.nonpolymer_details       ? 
_pdbx_entry_details.sequence_details         ? 
_pdbx_entry_details.compound_details         ? 
_pdbx_entry_details.source_details           ? 
_pdbx_entry_details.has_ligand_of_interest   N 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1 1 O A HOH 235 ? ? O A HOH 287 ? ? 1.58 
2 1 O A HOH 201 ? ? O A HOH 270 ? ? 1.78 
3 1 O A HOH 333 ? ? O A HOH 356 ? ? 2.02 
4 1 O A HOH 261 ? ? O A HOH 325 ? ? 2.03 
5 1 O A HOH 315 ? ? O A HOH 331 ? ? 2.12 
6 1 O A HOH 232 ? ? O A HOH 277 ? ? 2.19 
# 
_pdbx_validate_rmsd_bond.id                        1 
_pdbx_validate_rmsd_bond.PDB_model_num             1 
_pdbx_validate_rmsd_bond.auth_atom_id_1            P 
_pdbx_validate_rmsd_bond.auth_asym_id_1            A 
_pdbx_validate_rmsd_bond.auth_comp_id_1            DG 
_pdbx_validate_rmsd_bond.auth_seq_id_1             23 
_pdbx_validate_rmsd_bond.PDB_ins_code_1            ? 
_pdbx_validate_rmsd_bond.label_alt_id_1            ? 
_pdbx_validate_rmsd_bond.auth_atom_id_2            "O5'" 
_pdbx_validate_rmsd_bond.auth_asym_id_2            A 
_pdbx_validate_rmsd_bond.auth_comp_id_2            DG 
_pdbx_validate_rmsd_bond.auth_seq_id_2             23 
_pdbx_validate_rmsd_bond.PDB_ins_code_2            ? 
_pdbx_validate_rmsd_bond.label_alt_id_2            ? 
_pdbx_validate_rmsd_bond.bond_value                1.655 
_pdbx_validate_rmsd_bond.bond_target_value         1.593 
_pdbx_validate_rmsd_bond.bond_deviation            0.062 
_pdbx_validate_rmsd_bond.bond_standard_deviation   0.010 
_pdbx_validate_rmsd_bond.linker_flag               N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 DG A 1  ? ? 0.106 'SIDE CHAIN' 
2 1 DG A 8  ? ? 0.051 'SIDE CHAIN' 
3 1 DG A 11 ? ? 0.069 'SIDE CHAIN' 
4 1 DT A 15 ? ? 0.070 'SIDE CHAIN' 
5 1 DG A 16 ? ? 0.061 'SIDE CHAIN' 
6 1 DG A 19 ? ? 0.057 'SIDE CHAIN' 
# 
loop_
_pdbx_distant_solvent_atoms.id 
_pdbx_distant_solvent_atoms.PDB_model_num 
_pdbx_distant_solvent_atoms.auth_atom_id 
_pdbx_distant_solvent_atoms.label_alt_id 
_pdbx_distant_solvent_atoms.auth_asym_id 
_pdbx_distant_solvent_atoms.auth_comp_id 
_pdbx_distant_solvent_atoms.auth_seq_id 
_pdbx_distant_solvent_atoms.PDB_ins_code 
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 
_pdbx_distant_solvent_atoms.neighbor_ligand_distance 
1 1 O ? A HOH 357 ? 6.55 . 
2 1 O ? A HOH 358 ? 6.69 . 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DG  OP3    O N N 1   
DG  P      P N N 2   
DG  OP1    O N N 3   
DG  OP2    O N N 4   
DG  "O5'"  O N N 5   
DG  "C5'"  C N N 6   
DG  "C4'"  C N R 7   
DG  "O4'"  O N N 8   
DG  "C3'"  C N S 9   
DG  "O3'"  O N N 10  
DG  "C2'"  C N N 11  
DG  "C1'"  C N R 12  
DG  N9     N Y N 13  
DG  C8     C Y N 14  
DG  N7     N Y N 15  
DG  C5     C Y N 16  
DG  C6     C N N 17  
DG  O6     O N N 18  
DG  N1     N N N 19  
DG  C2     C N N 20  
DG  N2     N N N 21  
DG  N3     N N N 22  
DG  C4     C Y N 23  
DG  HOP3   H N N 24  
DG  HOP2   H N N 25  
DG  "H5'"  H N N 26  
DG  "H5''" H N N 27  
DG  "H4'"  H N N 28  
DG  "H3'"  H N N 29  
DG  "HO3'" H N N 30  
DG  "H2'"  H N N 31  
DG  "H2''" H N N 32  
DG  "H1'"  H N N 33  
DG  H8     H N N 34  
DG  H1     H N N 35  
DG  H21    H N N 36  
DG  H22    H N N 37  
DT  OP3    O N N 38  
DT  P      P N N 39  
DT  OP1    O N N 40  
DT  OP2    O N N 41  
DT  "O5'"  O N N 42  
DT  "C5'"  C N N 43  
DT  "C4'"  C N R 44  
DT  "O4'"  O N N 45  
DT  "C3'"  C N S 46  
DT  "O3'"  O N N 47  
DT  "C2'"  C N N 48  
DT  "C1'"  C N R 49  
DT  N1     N N N 50  
DT  C2     C N N 51  
DT  O2     O N N 52  
DT  N3     N N N 53  
DT  C4     C N N 54  
DT  O4     O N N 55  
DT  C5     C N N 56  
DT  C7     C N N 57  
DT  C6     C N N 58  
DT  HOP3   H N N 59  
DT  HOP2   H N N 60  
DT  "H5'"  H N N 61  
DT  "H5''" H N N 62  
DT  "H4'"  H N N 63  
DT  "H3'"  H N N 64  
DT  "HO3'" H N N 65  
DT  "H2'"  H N N 66  
DT  "H2''" H N N 67  
DT  "H1'"  H N N 68  
DT  H3     H N N 69  
DT  H71    H N N 70  
DT  H72    H N N 71  
DT  H73    H N N 72  
DT  H6     H N N 73  
HOH O      O N N 74  
HOH H1     H N N 75  
HOH H2     H N N 76  
K   K      K N N 77  
SPM N1     N N N 78  
SPM C2     C N N 79  
SPM C3     C N N 80  
SPM C4     C N N 81  
SPM N5     N N N 82  
SPM C6     C N N 83  
SPM C7     C N N 84  
SPM C8     C N N 85  
SPM C9     C N N 86  
SPM N10    N N N 87  
SPM C11    C N N 88  
SPM C12    C N N 89  
SPM C13    C N N 90  
SPM N14    N N N 91  
SPM HN11   H N N 92  
SPM HN12   H N N 93  
SPM H21    H N N 94  
SPM H22    H N N 95  
SPM H31    H N N 96  
SPM H32    H N N 97  
SPM H41    H N N 98  
SPM H42    H N N 99  
SPM HN5    H N N 100 
SPM H61    H N N 101 
SPM H62    H N N 102 
SPM H71    H N N 103 
SPM H72    H N N 104 
SPM H81    H N N 105 
SPM H82    H N N 106 
SPM H91    H N N 107 
SPM H92    H N N 108 
SPM HN0    H N N 109 
SPM H111   H N N 110 
SPM H112   H N N 111 
SPM H121   H N N 112 
SPM H122   H N N 113 
SPM H131   H N N 114 
SPM H132   H N N 115 
SPM HN41   H N N 116 
SPM HN42   H N N 117 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DG  OP3   P      sing N N 1   
DG  OP3   HOP3   sing N N 2   
DG  P     OP1    doub N N 3   
DG  P     OP2    sing N N 4   
DG  P     "O5'"  sing N N 5   
DG  OP2   HOP2   sing N N 6   
DG  "O5'" "C5'"  sing N N 7   
DG  "C5'" "C4'"  sing N N 8   
DG  "C5'" "H5'"  sing N N 9   
DG  "C5'" "H5''" sing N N 10  
DG  "C4'" "O4'"  sing N N 11  
DG  "C4'" "C3'"  sing N N 12  
DG  "C4'" "H4'"  sing N N 13  
DG  "O4'" "C1'"  sing N N 14  
DG  "C3'" "O3'"  sing N N 15  
DG  "C3'" "C2'"  sing N N 16  
DG  "C3'" "H3'"  sing N N 17  
DG  "O3'" "HO3'" sing N N 18  
DG  "C2'" "C1'"  sing N N 19  
DG  "C2'" "H2'"  sing N N 20  
DG  "C2'" "H2''" sing N N 21  
DG  "C1'" N9     sing N N 22  
DG  "C1'" "H1'"  sing N N 23  
DG  N9    C8     sing Y N 24  
DG  N9    C4     sing Y N 25  
DG  C8    N7     doub Y N 26  
DG  C8    H8     sing N N 27  
DG  N7    C5     sing Y N 28  
DG  C5    C6     sing N N 29  
DG  C5    C4     doub Y N 30  
DG  C6    O6     doub N N 31  
DG  C6    N1     sing N N 32  
DG  N1    C2     sing N N 33  
DG  N1    H1     sing N N 34  
DG  C2    N2     sing N N 35  
DG  C2    N3     doub N N 36  
DG  N2    H21    sing N N 37  
DG  N2    H22    sing N N 38  
DG  N3    C4     sing N N 39  
DT  OP3   P      sing N N 40  
DT  OP3   HOP3   sing N N 41  
DT  P     OP1    doub N N 42  
DT  P     OP2    sing N N 43  
DT  P     "O5'"  sing N N 44  
DT  OP2   HOP2   sing N N 45  
DT  "O5'" "C5'"  sing N N 46  
DT  "C5'" "C4'"  sing N N 47  
DT  "C5'" "H5'"  sing N N 48  
DT  "C5'" "H5''" sing N N 49  
DT  "C4'" "O4'"  sing N N 50  
DT  "C4'" "C3'"  sing N N 51  
DT  "C4'" "H4'"  sing N N 52  
DT  "O4'" "C1'"  sing N N 53  
DT  "C3'" "O3'"  sing N N 54  
DT  "C3'" "C2'"  sing N N 55  
DT  "C3'" "H3'"  sing N N 56  
DT  "O3'" "HO3'" sing N N 57  
DT  "C2'" "C1'"  sing N N 58  
DT  "C2'" "H2'"  sing N N 59  
DT  "C2'" "H2''" sing N N 60  
DT  "C1'" N1     sing N N 61  
DT  "C1'" "H1'"  sing N N 62  
DT  N1    C2     sing N N 63  
DT  N1    C6     sing N N 64  
DT  C2    O2     doub N N 65  
DT  C2    N3     sing N N 66  
DT  N3    C4     sing N N 67  
DT  N3    H3     sing N N 68  
DT  C4    O4     doub N N 69  
DT  C4    C5     sing N N 70  
DT  C5    C7     sing N N 71  
DT  C5    C6     doub N N 72  
DT  C7    H71    sing N N 73  
DT  C7    H72    sing N N 74  
DT  C7    H73    sing N N 75  
DT  C6    H6     sing N N 76  
HOH O     H1     sing N N 77  
HOH O     H2     sing N N 78  
SPM N1    C2     sing N N 79  
SPM N1    HN11   sing N N 80  
SPM N1    HN12   sing N N 81  
SPM C2    C3     sing N N 82  
SPM C2    H21    sing N N 83  
SPM C2    H22    sing N N 84  
SPM C3    C4     sing N N 85  
SPM C3    H31    sing N N 86  
SPM C3    H32    sing N N 87  
SPM C4    N5     sing N N 88  
SPM C4    H41    sing N N 89  
SPM C4    H42    sing N N 90  
SPM N5    C6     sing N N 91  
SPM N5    HN5    sing N N 92  
SPM C6    C7     sing N N 93  
SPM C6    H61    sing N N 94  
SPM C6    H62    sing N N 95  
SPM C7    C8     sing N N 96  
SPM C7    H71    sing N N 97  
SPM C7    H72    sing N N 98  
SPM C8    C9     sing N N 99  
SPM C8    H81    sing N N 100 
SPM C8    H82    sing N N 101 
SPM C9    N10    sing N N 102 
SPM C9    H91    sing N N 103 
SPM C9    H92    sing N N 104 
SPM N10   C11    sing N N 105 
SPM N10   HN0    sing N N 106 
SPM C11   C12    sing N N 107 
SPM C11   H111   sing N N 108 
SPM C11   H112   sing N N 109 
SPM C12   C13    sing N N 110 
SPM C12   H121   sing N N 111 
SPM C12   H122   sing N N 112 
SPM C13   N14    sing N N 113 
SPM C13   H131   sing N N 114 
SPM C13   H132   sing N N 115 
SPM N14   HN41   sing N N 116 
SPM N14   HN42   sing N N 117 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
7D5D 'double helix'  
7D5D 'internal loop' 
7D5D 'triple helix'  
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DG 1  1_555 A DG 11 1_555 -1.579 -3.422 -0.042 3.639  -4.367 89.701  1 A_DG1:DG11_A  A 1  ? A 11 ? 6 3 
1 A DG 2  1_555 A DG 12 1_555 -1.532 -3.568 0.015  -1.357 1.839  89.125  2 A_DG2:DG12_A  A 2  ? A 12 ? 6 3 
1 A DG 23 1_555 A DG 14 1_555 1.415  3.639  0.161  -6.785 -0.146 -89.789 3 A_DG23:DG14_A A 23 ? A 14 ? 6 3 
1 A DG 25 1_555 A DG 16 1_555 1.649  3.460  -0.264 -0.083 7.384  -88.877 4 A_DG25:DG16_A A 25 ? A 16 ? 6 3 
1 A DG 19 1_555 A DG 22 1_555 1.638  3.451  -0.012 -7.662 2.805  -89.717 5 A_DG19:DG22_A A 19 ? A 22 ? 6 3 
1 A DG 20 1_555 A DG 17 1_555 -1.440 -3.590 0.002  3.698  -2.501 90.296  6 A_DG20:DG17_A A 20 ? A 17 ? 6 3 
1 A DG 6  1_555 A DG 9  1_555 1.451  3.583  -0.015 -2.291 0.951  -89.996 7 A_DG6:DG9_A   A 6  ? A 9  ? 6 3 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DG 1  1_555 A DG 11 1_555 A DG 2  1_555 A DG 12 1_555 -0.330 -1.019 -3.396 0.014    -0.124  28.958  -2.067 0.657  -3.392 
-0.248 -0.028 28.958  1 AA_DG1DG2:DG12DG11_AA   A 1  ? A 11 ? A 2  ? A 12 ? 
1 A DG 2  1_555 A DG 12 1_555 A DG 23 1_555 A DG 14 1_555 3.607  1.078  0.054  -121.291 129.815 168.321 0.540  -1.803 -0.117 
64.912 60.650 179.762 2 AA_DG2DG23:DG14DG12_AA  A 2  ? A 12 ? A 23 ? A 14 ? 
1 A DG 23 1_555 A DG 14 1_555 A DG 25 1_555 A DG 16 1_555 -0.929 -1.704 3.386  3.972    -0.814  66.115  -1.526 1.014  3.350  
-0.746 -3.638 66.225  3 AA_DG23DG25:DG16DG14_AA A 23 ? A 14 ? A 25 ? A 16 ? 
1 A DG 19 1_555 A DG 22 1_555 A DG 20 1_555 A DG 17 1_555 0.468  1.886  -3.365 -2.836   2.416   -65.179 -1.645 0.555  -3.404 
-2.241 -2.631 -65.273 4 AA_DG19DG20:DG17DG22_AA A 19 ? A 22 ? A 20 ? A 17 ? 
1 A DG 20 1_555 A DG 17 1_555 A DG 6  1_555 A DG 9  1_555 3.504  1.353  0.100  -121.859 129.637 171.127 0.675  -1.753 -0.009 
64.821 60.931 179.839 5 AA_DG20DG6:DG9DG17_AA   A 20 ? A 17 ? A 6  ? A 9  ? 
# 
_pdbx_audit_support.funding_organization   'National Research Foundation (NRF, Singapore)' 
_pdbx_audit_support.country                Singapore 
_pdbx_audit_support.grant_number           NRF-NRFI2017-09 
_pdbx_audit_support.ordinal                1 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 SPERMINE        SPM 
3 'POTASSIUM ION' K   
4 water           HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   4U5M 
_pdbx_initial_refinement_model.details          ? 
# 
_pdbx_struct_assembly_auth_evidence.id                     1 
_pdbx_struct_assembly_auth_evidence.assembly_id            1 
_pdbx_struct_assembly_auth_evidence.experimental_support   none 
_pdbx_struct_assembly_auth_evidence.details                ? 
# 
_space_group.crystal_system   monoclinic 
_space_group.name_H-M_alt     'P 1 21 1' 
_space_group.IT_number        4 
_space_group.name_Hall        'P 2yb' 
_space_group.id               1 
#