HEADER HYDROLASE 29-SEP-20 7D6B TITLE CRYSTAL STRUCTURE OF ORYZA SATIVA OS4BGLU18 MONOLIGNOL BETA- TITLE 2 GLUCOSIDASE WITH DELTA-GLUCONOLACTONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE 18; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OS4BGLU18; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: BGLU18, OS04G0513900, LOC_OS04G43410, OSJNBA0004N05.26, SOURCE 6 OSJNBB0070J16.3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOLIGNOL BETA-GLUCOSIDASE, OS4BGLU18, HYDROLASE, DELTA- KEYWDS 2 GLUCONOLACTONE EXPDTA X-RAY DIFFRACTION AUTHOR S.BAIYA,S.PENGTHAISONG,J.R.KETUDAT CAIRNS REVDAT 4 23-OCT-24 7D6B 1 REMARK REVDAT 3 29-NOV-23 7D6B 1 REMARK REVDAT 2 10-FEB-21 7D6B 1 JRNL REVDAT 1 13-JAN-21 7D6B 0 JRNL AUTH S.BAIYA,S.PENGTHAISONG,S.KITJARUWANKUL,J.R.KETUDAT CAIRNS JRNL TITL STRUCTURAL ANALYSIS OF RICE OS4BGLU18 MONOLIGNOL JRNL TITL 2 BETA-GLUCOSIDASE. JRNL REF PLOS ONE V. 16 41325 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 33471829 JRNL DOI 10.1371/JOURNAL.PONE.0241325 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 50803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.1480 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 613 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8095 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7298 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10978 ; 1.350 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16783 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 958 ; 6.142 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 416 ;32.926 ;23.101 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1229 ;11.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;18.426 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1121 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9186 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2030 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 24 A 500 4 REMARK 3 1 B 24 B 500 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 7345 ; 0.360 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 7345 ; 2.010 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7D6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1300012730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53787 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2RGL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 0.1M MES, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.05450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.72400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.91550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.72400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.05450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.91550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 24 REMARK 465 MET A 25 REMARK 465 LEU A 501 REMARK 465 HIS A 502 REMARK 465 GLU A 503 REMARK 465 ASN A 504 REMARK 465 GLN A 505 REMARK 465 LEU B 501 REMARK 465 HIS B 502 REMARK 465 GLU B 503 REMARK 465 ASN B 504 REMARK 465 GLN B 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 117 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 80 -124.57 54.40 REMARK 500 TYR A 149 -18.65 75.64 REMARK 500 TYR A 159 14.76 -140.52 REMARK 500 ALA A 161 -110.54 42.69 REMARK 500 ALA A 228 -51.85 -129.29 REMARK 500 GLU A 289 -90.10 -96.15 REMARK 500 LYS A 328 -130.57 59.08 REMARK 500 THR A 380 -10.16 80.29 REMARK 500 ASP A 427 52.26 -118.77 REMARK 500 TRP A 465 -122.40 47.25 REMARK 500 ALA B 80 -124.94 52.90 REMARK 500 TYR B 149 -20.36 79.11 REMARK 500 TYR B 159 19.95 -144.34 REMARK 500 ALA B 161 -108.03 40.59 REMARK 500 GLU B 289 -96.46 -89.83 REMARK 500 LYS B 328 -129.52 56.06 REMARK 500 THR B 380 -10.59 77.20 REMARK 500 ASP B 416 -57.69 113.60 REMARK 500 ASP B 427 51.81 -116.09 REMARK 500 GLU B 464 57.52 -91.26 REMARK 500 TRP B 465 -118.77 48.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 989 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 990 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B1022 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B1023 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE2 REMARK 620 2 HIS A 85 NE2 110.0 REMARK 620 3 ASP B 82 OD1 155.3 89.2 REMARK 620 4 ASP B 82 OD2 100.8 111.1 56.6 REMARK 620 5 HIS B 85 ND1 100.7 113.8 84.7 118.8 REMARK 620 N 1 2 3 4 DBREF 7D6B A 26 505 UNP Q7XSK0 BGL18_ORYSJ 26 505 DBREF 7D6B B 26 505 UNP Q7XSK0 BGL18_ORYSJ 26 505 SEQADV 7D6B ALA A 24 UNP Q7XSK0 EXPRESSION TAG SEQADV 7D6B MET A 25 UNP Q7XSK0 EXPRESSION TAG SEQADV 7D6B ALA B 24 UNP Q7XSK0 EXPRESSION TAG SEQADV 7D6B MET B 25 UNP Q7XSK0 EXPRESSION TAG SEQRES 1 A 482 ALA MET ALA ILE HIS ARG SER ASP PHE PRO ALA SER PHE SEQRES 2 A 482 LEU PHE GLY THR ALA THR SER SER TYR GLN ILE GLU GLY SEQRES 3 A 482 ALA TYR LEU GLU GLY ASN LYS SER LEU SER ASN TRP ASP SEQRES 4 A 482 VAL PHE THR HIS LEU PRO GLY ASN ILE LYS ASP GLY SER SEQRES 5 A 482 ASN GLY ASP ILE ALA ASP ASP HIS TYR HIS ARG TYR GLU SEQRES 6 A 482 GLU ASP VAL GLU LEU MET ASN SER LEU GLY VAL ASN ALA SEQRES 7 A 482 TYR ARG PHE SER ILE SER TRP SER ARG ILE LEU PRO LYS SEQRES 8 A 482 GLY ARG PHE GLY GLY VAL ASN PRO ALA GLY ILE ASP PHE SEQRES 9 A 482 TYR ASN LYS LEU ILE ASP SER ILE LEU LEU LYS GLY ILE SEQRES 10 A 482 GLN PRO PHE VAL THR LEU THR HIS TYR ASP ILE PRO GLN SEQRES 11 A 482 GLU LEU GLU ASP ARG TYR GLY ALA TRP LEU ASN ALA GLU SEQRES 12 A 482 ILE GLN SER ASP PHE GLY HIS PHE ALA ASP VAL CYS PHE SEQRES 13 A 482 GLY ALA PHE GLY ASP ARG VAL LYS TYR TRP THR THR PHE SEQRES 14 A 482 ASN GLU PRO ASN VAL ALA VAL ARG HIS GLY TYR MET LEU SEQRES 15 A 482 GLY THR TYR PRO PRO SER ARG CYS SER PRO PRO PHE GLY SEQRES 16 A 482 HIS CYS ALA ARG GLY GLY ASP SER HIS ALA GLU PRO TYR SEQRES 17 A 482 VAL ALA ALA HIS ASN VAL ILE LEU SER HIS ALA THR ALA SEQRES 18 A 482 ILE GLU ILE TYR LYS ARG LYS TYR GLN SER LYS GLN ARG SEQRES 19 A 482 GLY MET ILE GLY MET VAL LEU TYR SER THR TRP TYR GLU SEQRES 20 A 482 PRO LEU ARG ASP VAL PRO GLU ASP ARG LEU ALA THR GLU SEQRES 21 A 482 ARG ALA LEU ALA PHE GLU THR PRO TRP PHE LEU ASP PRO SEQRES 22 A 482 LEU VAL TYR GLY ASP TYR PRO PRO GLU MET ARG GLN ILE SEQRES 23 A 482 LEU GLY GLY ARG LEU PRO SER PHE SER PRO GLU ASP ARG SEQRES 24 A 482 ARG LYS LEU ARG TYR LYS LEU ASP PHE ILE GLY VAL ASN SEQRES 25 A 482 HIS TYR THR THR LEU TYR ALA ARG ASP CYS MET PHE SER SEQRES 26 A 482 ASP CYS PRO GLN GLY GLN GLU THR GLN HIS ALA LEU ALA SEQRES 27 A 482 ALA VAL THR GLY GLU SER ASN GLY LEU PRO ILE GLY THR SEQRES 28 A 482 PRO THR ALA MET PRO THR PHE TYR VAL VAL PRO ASP GLY SEQRES 29 A 482 ILE GLU LYS MET VAL LYS TYR PHE MET ARG ARG TYR ASN SEQRES 30 A 482 ASN LEU PRO MET PHE ILE THR GLU ASN GLY TYR ALA GLN SEQRES 31 A 482 GLY GLY ASP SER TYR THR ASP ALA GLU ASP TRP ILE ASP SEQRES 32 A 482 ASP GLU ASP ARG ILE GLU TYR LEU GLU GLY TYR LEU THR SEQRES 33 A 482 LYS LEU ALA LYS VAL ILE ARG ASP GLY ALA ASP VAL ARG SEQRES 34 A 482 GLY TYR PHE ALA TRP SER VAL VAL ASP ASN PHE GLU TRP SEQRES 35 A 482 LEU PHE GLY TYR THR LEU ARG PHE GLY LEU TYR TYR ILE SEQRES 36 A 482 ASP TYR ARG THR GLN GLU ARG SER PRO LYS LEU SER ALA SEQRES 37 A 482 LEU TRP TYR LYS GLU PHE LEU GLN ASN LEU HIS GLU ASN SEQRES 38 A 482 GLN SEQRES 1 B 482 ALA MET ALA ILE HIS ARG SER ASP PHE PRO ALA SER PHE SEQRES 2 B 482 LEU PHE GLY THR ALA THR SER SER TYR GLN ILE GLU GLY SEQRES 3 B 482 ALA TYR LEU GLU GLY ASN LYS SER LEU SER ASN TRP ASP SEQRES 4 B 482 VAL PHE THR HIS LEU PRO GLY ASN ILE LYS ASP GLY SER SEQRES 5 B 482 ASN GLY ASP ILE ALA ASP ASP HIS TYR HIS ARG TYR GLU SEQRES 6 B 482 GLU ASP VAL GLU LEU MET ASN SER LEU GLY VAL ASN ALA SEQRES 7 B 482 TYR ARG PHE SER ILE SER TRP SER ARG ILE LEU PRO LYS SEQRES 8 B 482 GLY ARG PHE GLY GLY VAL ASN PRO ALA GLY ILE ASP PHE SEQRES 9 B 482 TYR ASN LYS LEU ILE ASP SER ILE LEU LEU LYS GLY ILE SEQRES 10 B 482 GLN PRO PHE VAL THR LEU THR HIS TYR ASP ILE PRO GLN SEQRES 11 B 482 GLU LEU GLU ASP ARG TYR GLY ALA TRP LEU ASN ALA GLU SEQRES 12 B 482 ILE GLN SER ASP PHE GLY HIS PHE ALA ASP VAL CYS PHE SEQRES 13 B 482 GLY ALA PHE GLY ASP ARG VAL LYS TYR TRP THR THR PHE SEQRES 14 B 482 ASN GLU PRO ASN VAL ALA VAL ARG HIS GLY TYR MET LEU SEQRES 15 B 482 GLY THR TYR PRO PRO SER ARG CYS SER PRO PRO PHE GLY SEQRES 16 B 482 HIS CYS ALA ARG GLY GLY ASP SER HIS ALA GLU PRO TYR SEQRES 17 B 482 VAL ALA ALA HIS ASN VAL ILE LEU SER HIS ALA THR ALA SEQRES 18 B 482 ILE GLU ILE TYR LYS ARG LYS TYR GLN SER LYS GLN ARG SEQRES 19 B 482 GLY MET ILE GLY MET VAL LEU TYR SER THR TRP TYR GLU SEQRES 20 B 482 PRO LEU ARG ASP VAL PRO GLU ASP ARG LEU ALA THR GLU SEQRES 21 B 482 ARG ALA LEU ALA PHE GLU THR PRO TRP PHE LEU ASP PRO SEQRES 22 B 482 LEU VAL TYR GLY ASP TYR PRO PRO GLU MET ARG GLN ILE SEQRES 23 B 482 LEU GLY GLY ARG LEU PRO SER PHE SER PRO GLU ASP ARG SEQRES 24 B 482 ARG LYS LEU ARG TYR LYS LEU ASP PHE ILE GLY VAL ASN SEQRES 25 B 482 HIS TYR THR THR LEU TYR ALA ARG ASP CYS MET PHE SER SEQRES 26 B 482 ASP CYS PRO GLN GLY GLN GLU THR GLN HIS ALA LEU ALA SEQRES 27 B 482 ALA VAL THR GLY GLU SER ASN GLY LEU PRO ILE GLY THR SEQRES 28 B 482 PRO THR ALA MET PRO THR PHE TYR VAL VAL PRO ASP GLY SEQRES 29 B 482 ILE GLU LYS MET VAL LYS TYR PHE MET ARG ARG TYR ASN SEQRES 30 B 482 ASN LEU PRO MET PHE ILE THR GLU ASN GLY TYR ALA GLN SEQRES 31 B 482 GLY GLY ASP SER TYR THR ASP ALA GLU ASP TRP ILE ASP SEQRES 32 B 482 ASP GLU ASP ARG ILE GLU TYR LEU GLU GLY TYR LEU THR SEQRES 33 B 482 LYS LEU ALA LYS VAL ILE ARG ASP GLY ALA ASP VAL ARG SEQRES 34 B 482 GLY TYR PHE ALA TRP SER VAL VAL ASP ASN PHE GLU TRP SEQRES 35 B 482 LEU PHE GLY TYR THR LEU ARG PHE GLY LEU TYR TYR ILE SEQRES 36 B 482 ASP TYR ARG THR GLN GLU ARG SER PRO LYS LEU SER ALA SEQRES 37 B 482 LEU TRP TYR LYS GLU PHE LEU GLN ASN LEU HIS GLU ASN SEQRES 38 B 482 GLN HET LGC A 601 12 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET GOL A 608 6 HET GOL A 609 6 HET GOL A 610 6 HET LGC B 601 12 HET ZN B 602 1 HET GOL B 603 6 HET GOL B 604 6 HET GOL B 605 6 HET GOL B 606 6 HET GOL B 607 6 HET GOL B 608 6 HET GOL B 609 6 HETNAM LGC D-GLUCONO-1,5-LACTONE HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN LGC (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL) HETSYN 2 LGC TETRAHYDRO-2H-PYRAN-2-ONE; GLUCONOLACTONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 LGC 2(C6 H10 O6) FORMUL 4 GOL 16(C3 H8 O3) FORMUL 14 ZN ZN 2+ FORMUL 22 HOH *613(H2 O) HELIX 1 AA1 HIS A 28 PHE A 32 5 5 HELIX 2 AA2 SER A 43 GLU A 48 1 6 HELIX 3 AA3 SER A 59 HIS A 66 1 8 HELIX 4 AA4 ASP A 82 GLY A 98 1 17 HELIX 5 AA5 SER A 107 LEU A 112 1 6 HELIX 6 AA6 ASN A 121 LYS A 138 1 18 HELIX 7 AA7 PRO A 152 GLY A 160 1 9 HELIX 8 AA8 ALA A 161 ALA A 165 5 5 HELIX 9 AA9 GLU A 166 GLY A 183 1 18 HELIX 10 AB1 GLU A 194 MET A 204 1 11 HELIX 11 AB2 ALA A 228 TYR A 252 1 25 HELIX 12 AB3 TYR A 252 ARG A 257 1 6 HELIX 13 AB4 VAL A 275 PHE A 288 1 14 HELIX 14 AB5 THR A 290 GLY A 300 1 11 HELIX 15 AB6 PRO A 303 GLY A 311 1 9 HELIX 16 AB7 GLY A 312 LEU A 314 5 3 HELIX 17 AB8 SER A 318 ARG A 326 1 9 HELIX 18 AB9 PRO A 385 TYR A 399 1 15 HELIX 19 AC1 ASP A 420 ASP A 426 1 7 HELIX 20 AC2 ASP A 427 ASP A 447 1 21 HELIX 21 AC3 GLU A 464 LEU A 471 5 8 HELIX 22 AC4 LYS A 488 ASN A 500 1 13 HELIX 23 AC5 HIS B 28 PHE B 32 5 5 HELIX 24 AC6 SER B 43 GLU B 48 1 6 HELIX 25 AC7 SER B 59 HIS B 66 1 8 HELIX 26 AC8 ASP B 82 LEU B 97 1 16 HELIX 27 AC9 SER B 107 LEU B 112 1 6 HELIX 28 AD1 LYS B 114 GLY B 118 5 5 HELIX 29 AD2 ASN B 121 LYS B 138 1 18 HELIX 30 AD3 PRO B 152 GLY B 160 1 9 HELIX 31 AD4 ALA B 161 ALA B 165 5 5 HELIX 32 AD5 GLU B 166 GLY B 183 1 18 HELIX 33 AD6 GLU B 194 MET B 204 1 11 HELIX 34 AD7 ALA B 228 TYR B 252 1 25 HELIX 35 AD8 TYR B 252 ARG B 257 1 6 HELIX 36 AD9 VAL B 275 THR B 290 1 16 HELIX 37 AE1 THR B 290 GLY B 300 1 11 HELIX 38 AE2 PRO B 303 GLY B 311 1 9 HELIX 39 AE3 GLY B 312 LEU B 314 5 3 HELIX 40 AE4 SER B 318 ARG B 326 1 9 HELIX 41 AE5 PRO B 385 ASN B 400 1 16 HELIX 42 AE6 ASP B 420 ASP B 426 1 7 HELIX 43 AE7 ASP B 427 ASP B 447 1 21 HELIX 44 AE8 GLU B 464 LEU B 471 5 8 HELIX 45 AE9 LYS B 488 ASN B 500 1 13 SHEET 1 AA1 9 LEU A 37 ALA A 41 0 SHEET 2 AA1 9 ALA A 101 SER A 105 1 O ARG A 103 N THR A 40 SHEET 3 AA1 9 GLN A 141 THR A 147 1 O THR A 145 N PHE A 104 SHEET 4 AA1 9 TYR A 188 ASN A 193 1 O THR A 190 N LEU A 146 SHEET 5 AA1 9 MET A 259 TYR A 265 1 O GLY A 261 N TRP A 189 SHEET 6 AA1 9 PHE A 331 ASN A 335 1 O GLY A 333 N MET A 262 SHEET 7 AA1 9 MET A 404 ASN A 409 1 O PHE A 405 N VAL A 334 SHEET 8 AA1 9 VAL A 451 TRP A 457 1 O ARG A 452 N MET A 404 SHEET 9 AA1 9 LEU A 37 ALA A 41 1 N GLY A 39 O TYR A 454 SHEET 1 AA2 3 TRP A 268 PRO A 271 0 SHEET 2 AA2 3 THR A 339 ASP A 344 1 O ALA A 342 N GLU A 270 SHEET 3 AA2 3 ALA A 361 THR A 364 -1 O THR A 364 N TYR A 341 SHEET 1 AA3 2 THR A 374 PRO A 375 0 SHEET 2 AA3 2 TYR A 382 VAL A 383 -1 O VAL A 383 N THR A 374 SHEET 1 AA4 2 TYR A 476 ASP A 479 0 SHEET 2 AA4 2 GLU A 484 PRO A 487 -1 O SER A 486 N TYR A 477 SHEET 1 AA5 9 LEU B 37 ALA B 41 0 SHEET 2 AA5 9 ALA B 101 SER B 105 1 O ARG B 103 N THR B 40 SHEET 3 AA5 9 GLN B 141 THR B 147 1 O THR B 145 N PHE B 104 SHEET 4 AA5 9 TYR B 188 ASN B 193 1 O THR B 190 N LEU B 146 SHEET 5 AA5 9 MET B 259 TYR B 265 1 O GLY B 261 N TRP B 189 SHEET 6 AA5 9 PHE B 331 ASN B 335 1 O GLY B 333 N MET B 262 SHEET 7 AA5 9 MET B 404 ASN B 409 1 O PHE B 405 N VAL B 334 SHEET 8 AA5 9 VAL B 451 TRP B 457 1 O ARG B 452 N MET B 404 SHEET 9 AA5 9 LEU B 37 ALA B 41 1 N LEU B 37 O TYR B 454 SHEET 1 AA6 3 TRP B 268 PRO B 271 0 SHEET 2 AA6 3 THR B 339 ASP B 344 1 O ALA B 342 N GLU B 270 SHEET 3 AA6 3 ALA B 361 THR B 364 -1 O THR B 364 N TYR B 341 SHEET 1 AA7 2 GLU B 366 SER B 367 0 SHEET 2 AA7 2 LEU B 370 PRO B 371 -1 O LEU B 370 N SER B 367 SHEET 1 AA8 2 THR B 374 PRO B 375 0 SHEET 2 AA8 2 TYR B 382 VAL B 383 -1 O VAL B 383 N THR B 374 SHEET 1 AA9 2 TYR B 476 ILE B 478 0 SHEET 2 AA9 2 ARG B 485 PRO B 487 -1 O SER B 486 N TYR B 477 SSBOND 1 CYS A 213 CYS A 220 1555 1555 2.09 SSBOND 2 CYS A 345 CYS A 350 1555 1555 2.07 SSBOND 3 CYS B 213 CYS B 220 1555 1555 2.11 SSBOND 4 CYS B 345 CYS B 350 1555 1555 2.05 LINK OE2 GLU A 53 ZN ZN B 602 1555 1555 1.94 LINK NE2 HIS A 85 ZN ZN B 602 1555 1555 2.08 LINK OD1 ASP B 82 ZN ZN B 602 1555 1555 2.57 LINK OD2 ASP B 82 ZN ZN B 602 1555 1555 1.95 LINK ND1 HIS B 85 ZN ZN B 602 1555 1555 2.14 CISPEP 1 PRO A 209 PRO A 210 0 11.84 CISPEP 2 PRO A 215 PRO A 216 0 4.76 CISPEP 3 TRP A 457 SER A 458 0 3.56 CISPEP 4 PRO B 209 PRO B 210 0 8.04 CISPEP 5 PRO B 215 PRO B 216 0 4.75 CISPEP 6 TRP B 457 SER B 458 0 1.64 CRYST1 52.109 83.831 207.448 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004820 0.00000 CONECT 226 7825 CONECT 475 7825 CONECT 1507 1558 CONECT 1558 1507 CONECT 2596 2635 CONECT 2635 2596 CONECT 4315 7825 CONECT 4316 7825 CONECT 4345 7825 CONECT 5396 5447 CONECT 5447 5396 CONECT 6474 6513 CONECT 6513 6474 CONECT 7747 7748 7749 7750 CONECT 7748 7747 7751 7752 CONECT 7749 7747 7756 CONECT 7750 7747 CONECT 7751 7748 CONECT 7752 7748 7753 7754 CONECT 7753 7752 CONECT 7754 7752 7755 7756 CONECT 7755 7754 CONECT 7756 7749 7754 7757 CONECT 7757 7756 7758 CONECT 7758 7757 CONECT 7759 7760 7761 CONECT 7760 7759 CONECT 7761 7759 7762 7763 CONECT 7762 7761 CONECT 7763 7761 7764 CONECT 7764 7763 CONECT 7765 7766 7767 CONECT 7766 7765 CONECT 7767 7765 7768 7769 CONECT 7768 7767 CONECT 7769 7767 7770 CONECT 7770 7769 CONECT 7771 7772 7773 CONECT 7772 7771 CONECT 7773 7771 7774 7775 CONECT 7774 7773 CONECT 7775 7773 7776 CONECT 7776 7775 CONECT 7777 7778 7779 CONECT 7778 7777 CONECT 7779 7777 7780 7781 CONECT 7780 7779 CONECT 7781 7779 7782 CONECT 7782 7781 CONECT 7783 7784 7785 CONECT 7784 7783 CONECT 7785 7783 7786 7787 CONECT 7786 7785 CONECT 7787 7785 7788 CONECT 7788 7787 CONECT 7789 7790 7791 CONECT 7790 7789 CONECT 7791 7789 7792 7793 CONECT 7792 7791 CONECT 7793 7791 7794 CONECT 7794 7793 CONECT 7795 7796 7797 CONECT 7796 7795 CONECT 7797 7795 7798 7799 CONECT 7798 7797 CONECT 7799 7797 7800 CONECT 7800 7799 CONECT 7801 7802 7803 CONECT 7802 7801 CONECT 7803 7801 7804 7805 CONECT 7804 7803 CONECT 7805 7803 7806 CONECT 7806 7805 CONECT 7807 7808 7809 CONECT 7808 7807 CONECT 7809 7807 7810 7811 CONECT 7810 7809 CONECT 7811 7809 7812 CONECT 7812 7811 CONECT 7813 7814 7815 7816 CONECT 7814 7813 7817 7818 CONECT 7815 7813 7822 CONECT 7816 7813 CONECT 7817 7814 CONECT 7818 7814 7819 7820 CONECT 7819 7818 CONECT 7820 7818 7821 7822 CONECT 7821 7820 CONECT 7822 7815 7820 7823 CONECT 7823 7822 7824 CONECT 7824 7823 CONECT 7825 226 475 4315 4316 CONECT 7825 4345 CONECT 7826 7827 7828 CONECT 7827 7826 CONECT 7828 7826 7829 7830 CONECT 7829 7828 CONECT 7830 7828 7831 CONECT 7831 7830 CONECT 7832 7833 7834 CONECT 7833 7832 CONECT 7834 7832 7835 7836 CONECT 7835 7834 CONECT 7836 7834 7837 CONECT 7837 7836 CONECT 7838 7839 7840 CONECT 7839 7838 CONECT 7840 7838 7841 7842 CONECT 7841 7840 CONECT 7842 7840 7843 CONECT 7843 7842 CONECT 7844 7845 7846 CONECT 7845 7844 CONECT 7846 7844 7847 7848 CONECT 7847 7846 CONECT 7848 7846 7849 CONECT 7849 7848 CONECT 7850 7851 7852 CONECT 7851 7850 CONECT 7852 7850 7853 7854 CONECT 7853 7852 CONECT 7854 7852 7855 CONECT 7855 7854 CONECT 7856 7857 7858 CONECT 7857 7856 CONECT 7858 7856 7859 7860 CONECT 7859 7858 CONECT 7860 7858 7861 CONECT 7861 7860 CONECT 7862 7863 7864 CONECT 7863 7862 CONECT 7864 7862 7865 7866 CONECT 7865 7864 CONECT 7866 7864 7867 CONECT 7867 7866 MASTER 345 0 19 45 34 0 0 6 8449 2 135 76 END