HEADER MEMBRANE PROTEIN 05-OCT-20 7D7P TITLE CRYSTAL STRUCTURE OF THE PHOSPHODIESTERASE DOMAIN OF SALPINGOECA TITLE 2 ROSETTA RHODOPSIN PHOSPHODIESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.4.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALPINGOECA ROSETTA (STRAIN ATCC 50818 / BSB- SOURCE 3 021); SOURCE 4 ORGANISM_TAXID: 946362; SOURCE 5 GENE: PTSG_02023; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS MICROBIAL RHODOPSIN, EIGHT-TRANSMEMBRANE, LIGHT-DEPENDENT KEYWDS 2 PHOSPHODIESTERASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.IKUTA,W.SHIHOYA,K.YAMASHITA,O.NUREKI REVDAT 3 29-NOV-23 7D7P 1 REMARK REVDAT 2 25-NOV-20 7D7P 1 JRNL REVDAT 1 18-NOV-20 7D7P 0 JRNL AUTH T.IKUTA,W.SHIHOYA,M.SUGIURA,K.YOSHIDA,M.WATARI,T.TOKANO, JRNL AUTH 2 K.YAMASHITA,K.KATAYAMA,S.P.TSUNODA,T.UCHIHASHI,H.KANDORI, JRNL AUTH 3 O.NUREKI JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF RHODOPSIN JRNL TITL 2 PHOSPHODIESTERASE. JRNL REF NAT COMMUN V. 11 5605 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33154353 JRNL DOI 10.1038/S41467-020-19376-7 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 21969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5160 - 4.1992 0.86 2553 135 0.1817 0.2181 REMARK 3 2 4.1992 - 3.3333 0.91 2654 140 0.1730 0.2281 REMARK 3 3 3.3333 - 2.9120 0.91 2652 140 0.1866 0.2094 REMARK 3 4 2.9120 - 2.6458 0.93 2678 141 0.1876 0.2826 REMARK 3 5 2.6458 - 2.4562 0.94 2693 142 0.1915 0.2606 REMARK 3 6 2.4562 - 2.3114 0.95 2743 144 0.1977 0.2350 REMARK 3 7 2.3114 - 2.1956 0.91 2613 138 0.2077 0.2845 REMARK 3 8 2.1956 - 2.1000 0.80 2282 121 0.2375 0.2995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2685 REMARK 3 ANGLE : 0.418 3633 REMARK 3 CHIRALITY : 0.034 414 REMARK 3 PLANARITY : 0.003 469 REMARK 3 DIHEDRAL : 6.073 1600 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% (V/V) PEG 400, 50MM CALCIUM REMARK 280 ACETATE, PH 5.0, 200MM NACL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.60000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.60000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -22.28239 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 33.77000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 212.70071 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1064 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 346 REMARK 465 ASP A 347 REMARK 465 ASP A 348 REMARK 465 ASP A 349 REMARK 465 VAL A 350 REMARK 465 LYS A 351 REMARK 465 SER A 352 REMARK 465 TRP A 353 REMARK 465 ILE A 354 REMARK 465 MET A 355 REMARK 465 ASN A 356 REMARK 465 GLU A 357 REMARK 465 PHE A 358 REMARK 465 SER A 359 REMARK 465 GLY A 360 REMARK 465 SER A 361 REMARK 465 THR A 362 REMARK 465 ASP A 363 REMARK 465 GLY A 364 REMARK 465 LYS A 365 REMARK 465 GLY A 366 REMARK 465 GLY A 367 REMARK 465 ASP A 368 REMARK 465 ASP A 369 REMARK 465 ALA A 370 REMARK 465 LYS A 371 REMARK 465 ALA A 372 REMARK 465 GLN A 373 REMARK 465 GLN A 374 REMARK 465 ARG A 375 REMARK 465 ALA A 376 REMARK 465 ARG A 377 REMARK 465 GLY A 378 REMARK 465 ARG A 379 REMARK 465 PHE A 709 REMARK 465 GLN A 710 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 HIS A 382 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 383 OG REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 GLN A 420 CG CD OE1 NE2 REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 LYS A 535 CG CD CE NZ REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 ILE A 584 CG1 CG2 CD1 REMARK 470 GLU A 588 CG CD OE1 OE2 REMARK 470 LYS A 636 CG CD CE NZ REMARK 470 PHE A 644 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 655 CG CD CE NZ REMARK 470 GLU A 698 CG CD OE1 OE2 REMARK 470 GLN A 702 CG CD OE1 NE2 REMARK 470 MET A 703 CG SD CE REMARK 470 GLN A 704 CG CD OE1 NE2 REMARK 470 TYR A 708 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 919 O HOH A 1065 1.99 REMARK 500 O HOH A 970 O HOH A 1062 2.05 REMARK 500 O HOH A 974 O HOH A 1022 2.09 REMARK 500 O2 EDO A 805 O HOH A 901 2.12 REMARK 500 NH2 ARG A 646 O HOH A 902 2.13 REMARK 500 O HOH A 974 O HOH A 994 2.14 REMARK 500 OE2 GLU A 426 O HOH A 903 2.16 REMARK 500 O1 EDO A 803 O HOH A 904 2.17 REMARK 500 O HOH A 902 O HOH A 1006 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 990 O HOH A 1045 4559 1.89 REMARK 500 OE2 GLU A 389 NH2 ARG A 443 45510 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 518 59.40 35.43 REMARK 500 ASN A 585 70.68 53.64 REMARK 500 VAL A 664 -56.50 -122.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1076 DISTANCE = 6.82 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 801 REMARK 610 PEG A 802 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 806 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 456 NE2 REMARK 620 2 HIS A 491 NE2 94.0 REMARK 620 3 ASP A 492 OD2 94.3 87.8 REMARK 620 4 ASP A 605 OD1 89.6 90.5 175.9 REMARK 620 5 HOH A 916 O 169.7 96.3 85.5 91.0 REMARK 620 6 HOH A 974 O 87.1 178.6 92.9 88.7 82.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 807 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 492 OD1 REMARK 620 2 HOH A 916 O 97.8 REMARK 620 3 HOH A 917 O 88.7 85.1 REMARK 620 4 HOH A 953 O 94.8 86.4 171.1 REMARK 620 5 HOH A 954 O 167.9 85.4 79.9 97.1 REMARK 620 6 HOH A1003 O 91.6 168.9 101.2 86.9 86.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7CJ3 RELATED DB: PDB REMARK 900 RH-PDE TRANSMEMBRANE DOMAIN DBREF 7D7P A 347 703 UNP F2TZN0 F2TZN0_SALR5 347 703 SEQADV 7D7P MET A 346 UNP F2TZN0 INITIATING METHIONINE SEQADV 7D7P GLN A 704 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7P GLU A 705 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7P ASN A 706 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7P LEU A 707 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7P TYR A 708 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7P PHE A 709 UNP F2TZN0 EXPRESSION TAG SEQADV 7D7P GLN A 710 UNP F2TZN0 EXPRESSION TAG SEQRES 1 A 365 MET ASP ASP ASP VAL LYS SER TRP ILE MET ASN GLU PHE SEQRES 2 A 365 SER GLY SER THR ASP GLY LYS GLY GLY ASP ASP ALA LYS SEQRES 3 A 365 ALA GLN GLN ARG ALA ARG GLY ARG LYS GLY HIS SER ALA SEQRES 4 A 365 ALA MET ASP ALA GLU LYS LEU ALA ALA SER SER LEU PHE SEQRES 5 A 365 THR TRP ASP PHE ASP ALA LEU ASP LYS SER ASP GLU ASP SEQRES 6 A 365 LEU THR ALA VAL CYS VAL ARG VAL PHE GLN GLU LEU HIS SEQRES 7 A 365 VAL ILE GLU GLN PHE ASN ILE ASP GLU LYS LYS LEU ARG SEQRES 8 A 365 LYS TRP LEU GLN LYS VAL ARG THR GLN TYR ASN LYS ASN SEQRES 9 A 365 PRO PHE HIS ASN TRP ARG HIS ALA VAL MET VAL LEU HIS SEQRES 10 A 365 THR THR TYR LEU LEU LEU THR SER VAL ALA THR GLU PHE SEQRES 11 A 365 ILE THR GLU VAL GLU LEU LEU ALA MET LEU ILE ALA ALA SEQRES 12 A 365 LEU SER HIS ASP LEU ASP HIS ASN GLY LEU THR ASN ALA SEQRES 13 A 365 PHE HIS ILE ASN SER ARG SER GLU LEU ALA LEU VAL TYR SEQRES 14 A 365 ASN ASP GLN SER VAL LEU GLU ASN HIS HIS SER HIS LEU SEQRES 15 A 365 ALA PHE GLU ILE LEU LEU GLU LYS GLY CYS ASN VAL VAL SEQRES 16 A 365 GLU ASN LEU ASP GLU ASP GLU PHE LYS ARG LEU ARG ALA SEQRES 17 A 365 VAL ILE ILE ASN CYS ILE LEU ASN THR ASP MET ALA THR SEQRES 18 A 365 HIS HIS THR LYS LEU SER LYS MET GLU GLU VAL ASN ARG SEQRES 19 A 365 LEU GLY GLY PHE ILE ASN LEU ALA GLU ASN ASN ASP GLN SEQRES 20 A 365 ARG LEU PHE VAL LEU ALA VAL LEU LEU HIS THR ALA ASP SEQRES 21 A 365 LEU HIS ASN PRO ILE LYS PRO PHE GLU SER ASN LYS ARG SEQRES 22 A 365 TRP SER ALA ARG LEU GLN LYS GLU PHE ASN ASN GLN VAL SEQRES 23 A 365 GLU LEU GLU ALA LYS MET ASN LEU PRO SER LEU PRO PHE SEQRES 24 A 365 MET ARG GLY ASN ASP GLU GLU SER LEU ALA LYS GLY GLU SEQRES 25 A 365 ILE GLY PHE ILE ASN PHE VAL VAL LYS PRO TRP HIS GLN SEQRES 26 A 365 GLN LEU SER GLN ALA PHE PRO LYS LEU ASP PHE LEU LEU SEQRES 27 A 365 ASP THR ILE ASP ALA ASN LEU ALA GLU TRP LYS ALA ILE SEQRES 28 A 365 ALA GLU SER TYR ARG GLN MET GLN GLU ASN LEU TYR PHE SEQRES 29 A 365 GLN HET 2PE A 801 19 HET PEG A 802 5 HET EDO A 803 4 HET EDO A 804 4 HET EDO A 805 4 HET ZN A 806 1 HET MG A 807 1 HETNAM 2PE NONAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 2PE C18 H38 O10 FORMUL 3 PEG C4 H10 O3 FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 ZN ZN 2+ FORMUL 8 MG MG 2+ FORMUL 9 HOH *176(H2 O) HELIX 1 AA1 ASP A 387 ALA A 393 1 7 HELIX 2 AA2 ASP A 402 LYS A 406 5 5 HELIX 3 AA3 SER A 407 LEU A 422 1 16 HELIX 4 AA4 HIS A 423 PHE A 428 1 6 HELIX 5 AA5 ASP A 431 GLN A 445 1 15 HELIX 6 AA6 ASN A 453 ALA A 472 1 20 HELIX 7 AA7 THR A 477 HIS A 491 1 15 HELIX 8 AA8 THR A 499 ARG A 507 1 9 HELIX 9 AA9 SER A 508 ASN A 515 1 8 HELIX 10 AB1 SER A 518 LEU A 533 1 16 HELIX 11 AB2 GLU A 534 ASN A 538 5 5 HELIX 12 AB3 ASP A 544 ASN A 561 1 18 HELIX 13 AB4 THR A 562 ALA A 565 5 4 HELIX 14 AB5 THR A 566 LEU A 580 1 15 HELIX 15 AB6 ASN A 589 LEU A 606 1 18 HELIX 16 AB7 HIS A 607 LYS A 611 5 5 HELIX 17 AB8 PRO A 612 MET A 637 1 26 HELIX 18 AB9 LEU A 642 GLY A 647 5 6 HELIX 19 AC1 ASP A 649 VAL A 664 1 16 HELIX 20 AC2 VAL A 664 PHE A 676 1 13 HELIX 21 AC3 PRO A 677 LEU A 679 5 3 HELIX 22 AC4 ASP A 680 GLU A 705 1 26 HELIX 23 AC5 ASN A 706 TYR A 708 5 3 LINK NE2 HIS A 456 ZN ZN A 806 1555 1555 2.25 LINK NE2 HIS A 491 ZN ZN A 806 1555 1555 2.20 LINK OD2 ASP A 492 ZN ZN A 806 1555 1555 2.20 LINK OD1 ASP A 492 MG MG A 807 1555 1555 2.16 LINK OD1 ASP A 605 ZN ZN A 806 1555 1555 2.26 LINK ZN ZN A 806 O HOH A 916 1555 1555 2.49 LINK ZN ZN A 806 O HOH A 974 1555 1555 2.38 LINK MG MG A 807 O HOH A 916 1555 1555 2.05 LINK MG MG A 807 O HOH A 917 1555 1555 2.23 LINK MG MG A 807 O HOH A 953 1555 1555 2.26 LINK MG MG A 807 O HOH A 954 1555 1555 2.16 LINK MG MG A 807 O HOH A1003 1555 1555 2.04 CRYST1 117.200 67.540 56.890 90.00 110.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008532 0.000000 0.003244 0.00000 SCALE2 0.000000 0.014806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018805 0.00000