data_7D7X # _entry.id 7D7X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7D7X pdb_00007d7x 10.2210/pdb7d7x/pdb WWPDB D_1300018910 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7D7X _pdbx_database_status.recvd_initial_deposition_date 2020-10-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, H.' 1 0000-0001-7436-5895 'Ren, A.M.' 2 0000-0002-5420-4899 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 48 _citation.language ? _citation.page_first 12394 _citation.page_last 12406 _citation.title 'Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaa1029 _citation.pdbx_database_id_PubMed 33170270 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, H.' 1 ? primary 'Egger, M.' 2 ? primary 'Xu, X.' 3 ? primary 'Flemmich, L.' 4 ? primary 'Krasheninina, O.' 5 ? primary 'Sun, A.' 6 ? primary 'Micura, R.' 7 ? primary 'Ren, A.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7D7X _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.337 _cell.length_a_esd ? _cell.length_b 57.400 _cell.length_b_esd ? _cell.length_c 196.826 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '18GAAA(52-MER)' 16438.873 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 4 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 5 water nat water 18.015 40 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUUCAACAACCCCGUAGGUGGGGACGAAAGUCAGCGCACCUACUGGAGCC _entity_poly.pdbx_seq_one_letter_code_can GCUUCAACAACCCCGUAGGUGGGGACGAAAGUCAGCGCACCUACUGGAGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 U n 1 5 C n 1 6 A n 1 7 A n 1 8 C n 1 9 A n 1 10 A n 1 11 C n 1 12 C n 1 13 C n 1 14 C n 1 15 G n 1 16 U n 1 17 A n 1 18 G n 1 19 G n 1 20 U n 1 21 G n 1 22 G n 1 23 G n 1 24 G n 1 25 A n 1 26 C n 1 27 G n 1 28 A n 1 29 A n 1 30 A n 1 31 G n 1 32 U n 1 33 C n 1 34 A n 1 35 G n 1 36 C n 1 37 G n 1 38 C n 1 39 A n 1 40 C n 1 41 C n 1 42 U n 1 43 A n 1 44 C n 1 45 U n 1 46 G n 1 47 G n 1 48 A n 1 49 G n 1 50 C n 1 51 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 51 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7D7X _struct_ref.pdbx_db_accession 7D7X _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7D7X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 51 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7D7X _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 52 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7D7X _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.75 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 74.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M MES pH 6.5, 1.6 M MgSO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-01-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97930 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7D7X _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.6310 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9705 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.000 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.200 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.773 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.107 _reflns.pdbx_Rpim_I_all 0.030 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.640 2.730 ? ? ? ? ? ? 943 99.500 ? ? ? ? 0.945 ? ? ? ? ? ? ? ? 9.900 ? 0.421 ? ? 0.990 0.289 ? 1 1 0.904 ? ? 2.730 2.840 ? ? ? ? ? ? 954 100.000 ? ? ? ? 0.607 ? ? ? ? ? ? ? ? 11.100 ? 0.416 ? ? 0.635 0.182 ? 2 1 0.984 ? ? 2.840 2.970 ? ? ? ? ? ? 954 100.000 ? ? ? ? 0.329 ? ? ? ? ? ? ? ? 12.200 ? 0.422 ? ? 0.343 0.096 ? 3 1 0.996 ? ? 2.970 3.130 ? ? ? ? ? ? 949 100.000 ? ? ? ? 0.185 ? ? ? ? ? ? ? ? 12.300 ? 0.479 ? ? 0.193 0.055 ? 4 1 0.999 ? ? 3.130 3.330 ? ? ? ? ? ? 961 100.000 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? 11.800 ? 0.521 ? ? 0.136 0.041 ? 5 1 0.998 ? ? 3.330 3.580 ? ? ? ? ? ? 951 100.000 ? ? ? ? 0.095 ? ? ? ? ? ? ? ? 13.500 ? 0.582 ? ? 0.099 0.027 ? 6 1 0.999 ? ? 3.580 3.940 ? ? ? ? ? ? 967 100.000 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 13.400 ? 0.730 ? ? 0.088 0.024 ? 7 1 0.999 ? ? 3.940 4.510 ? ? ? ? ? ? 977 100.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 12.600 ? 0.965 ? ? 0.091 0.026 ? 8 1 0.999 ? ? 4.510 5.690 ? ? ? ? ? ? 996 100.000 ? ? ? ? 0.083 ? ? ? ? ? ? ? ? 12.100 ? 1.361 ? ? 0.087 0.025 ? 9 1 0.998 ? ? 5.690 50.000 ? ? ? ? ? ? 1053 99.800 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 11.500 ? 1.682 ? ? 0.083 0.024 ? 10 1 0.997 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 152.720 _refine.B_iso_mean 79.8285 _refine.B_iso_min 57.310 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7D7X _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.6310 _refine.ls_d_res_low 26.6360 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9493 _refine.ls_number_reflns_R_free 478 _refine.ls_number_reflns_R_work 9015 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.8300 _refine.ls_percent_reflns_R_free 5.0400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2233 _refine.ls_R_factor_R_free 0.2427 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2222 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7D7V _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.5300 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.6310 _refine_hist.d_res_low 26.6360 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 1198 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 52 _refine_hist.pdbx_B_iso_mean_ligand 79.16 _refine_hist.pdbx_B_iso_mean_solvent 78.12 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1123 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.6311 3.0114 . . 164 2926 98.0000 . . . 0.4366 0.0000 0.4088 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0114 3.7922 . . 146 2954 97.0000 . . . 0.2784 0.0000 0.2395 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7922 26.6360 . . 168 3135 99.0000 . . . 0.1917 0.0000 0.1832 . . . . . . . . . . . # _struct.entry_id 7D7X _struct.title 'Crystal Structure of the Domain1 of NAD+ Riboswitch with adenosine diphosphate (ADP)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7D7X _struct_keywords.text 'riboswitch, RNA structure, RNA folding, RNA-ligand interactions, RNA crystallography, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 6 OP2 ? ? ? 1_555 F MG . MG ? ? A A 7 A MG 105 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc2 metalc ? ? A A 7 OP2 ? ? ? 1_555 I MG . MG ? ? A A 8 A MG 108 1_555 ? ? ? ? ? ? ? 1.871 ? ? metalc3 metalc ? ? A C 8 OP2 ? ? ? 1_555 I MG . MG ? ? A C 9 A MG 108 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc4 metalc ? ? A A 10 OP2 ? ? ? 1_555 C MG . MG ? ? A A 11 A MG 102 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc5 metalc ? ? A U 16 OP1 ? ? ? 1_555 C MG . MG ? ? A U 17 A MG 102 2_455 ? ? ? ? ? ? ? 2.041 ? ? metalc6 metalc ? ? A G 46 O6 ? ? ? 1_555 J MG . MG ? ? A G 47 A MG 109 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 203 1_555 ? ? ? ? ? ? ? 1.701 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 219 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 220 2_455 ? ? ? ? ? ? ? 2.113 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 221 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 208 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 209 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 214 1_555 ? ? ? ? ? ? ? 2.512 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 231 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 238 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 239 1_555 ? ? ? ? ? ? ? 2.480 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 204 8_544 ? ? ? ? ? ? ? 2.096 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 222 8_544 ? ? ? ? ? ? ? 2.331 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 226 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 229 8_544 ? ? ? ? ? ? ? 1.885 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 233 8_544 ? ? ? ? ? ? ? 2.290 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 104 A HOH 235 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 105 A HOH 211 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 105 A HOH 215 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 105 A HOH 216 1_555 ? ? ? ? ? ? ? 2.380 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 105 A HOH 224 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 105 A HOH 225 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc28 metalc ? ? G MG . MG ? ? ? 1_555 K ADP . O1B ? ? A MG 106 A ADP 110 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc29 metalc ? ? G MG . MG ? ? ? 1_555 K ADP . O1A ? ? A MG 106 A ADP 110 1_555 ? ? ? ? ? ? ? 2.646 ? ? metalc30 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 106 A HOH 202 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc31 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 106 A HOH 205 1_555 ? ? ? ? ? ? ? 2.254 ? ? metalc32 metalc ? ? G MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 106 A HOH 217 1_555 ? ? ? ? ? ? ? 1.878 ? ? metalc33 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 107 A HOH 223 8_544 ? ? ? ? ? ? ? 1.947 ? ? metalc34 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 107 A HOH 230 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc35 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 107 A HOH 232 8_544 ? ? ? ? ? ? ? 2.132 ? ? metalc36 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 107 A HOH 236 8_544 ? ? ? ? ? ? ? 2.182 ? ? metalc37 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 107 A HOH 237 8_544 ? ? ? ? ? ? ? 2.228 ? ? metalc38 metalc ? ? H MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 107 A HOH 240 8_544 ? ? ? ? ? ? ? 2.080 ? ? metalc39 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 108 A HOH 207 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc40 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 108 A HOH 212 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc41 metalc ? ? I MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 108 A HOH 213 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc42 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 109 A HOH 201 1_555 ? ? ? ? ? ? ? 2.244 ? ? metalc43 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 109 A HOH 206 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc44 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 109 A HOH 218 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc45 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 109 A HOH 228 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc46 metalc ? ? J MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 109 A HOH 234 1_555 ? ? ? ? ? ? ? 2.084 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 2 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 3 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 48 N1 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 48 N6 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 47 O6 ? ? A U 5 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 47 N1 ? ? A U 5 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 6 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 7 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 7 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 13 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 14 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 43 N1 ? ? A U 17 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 43 N6 ? ? A U 17 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 18 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 18 A U 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 20 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 20 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 20 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 39 N1 ? ? A U 21 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 20 O4 ? ? ? 1_555 A A 39 N6 ? ? A U 21 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 23 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 N1 ? ? ? 1_555 A A 34 N1 ? ? A G 24 A A 35 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog44 hydrog ? ? A G 23 O6 ? ? ? 1_555 A A 34 N6 ? ? A G 24 A A 35 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 26 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 26 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 27 N2 ? ? ? 1_555 A A 30 N7 ? ? A G 28 A A 31 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7D7X _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018071 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017422 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005081 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2 2 G G A . n A 1 2 C 2 3 3 C C A . n A 1 3 U 3 4 4 U U A . n A 1 4 U 4 5 5 U U A . n A 1 5 C 5 6 6 C C A . n A 1 6 A 6 7 7 A A A . n A 1 7 A 7 8 8 A A A . n A 1 8 C 8 9 9 C C A . n A 1 9 A 9 10 10 A A A . n A 1 10 A 10 11 11 A A A . n A 1 11 C 11 12 12 C C A . n A 1 12 C 12 13 13 C C A . n A 1 13 C 13 14 14 C C A . n A 1 14 C 14 15 15 C C A . n A 1 15 G 15 16 16 G G A . n A 1 16 U 16 17 17 U U A . n A 1 17 A 17 18 18 A A A . n A 1 18 G 18 19 19 G G A . n A 1 19 G 19 20 20 G G A . n A 1 20 U 20 21 21 U U A . n A 1 21 G 21 22 22 G G A . n A 1 22 G 22 23 23 G G A . n A 1 23 G 23 24 24 G G A . n A 1 24 G 24 25 25 G G A . n A 1 25 A 25 26 26 A A A . n A 1 26 C 26 27 27 C C A . n A 1 27 G 27 28 28 G G A . n A 1 28 A 28 29 29 A A A . n A 1 29 A 29 30 30 A A A . n A 1 30 A 30 31 31 A A A . n A 1 31 G 31 32 32 G G A . n A 1 32 U 32 33 33 U U A . n A 1 33 C 33 34 34 C C A . n A 1 34 A 34 35 35 A A A . n A 1 35 G 35 36 36 G G A . n A 1 36 C 36 37 37 C C A . n A 1 37 G 37 38 38 G G A . n A 1 38 C 38 39 39 C C A . n A 1 39 A 39 40 40 A A A . n A 1 40 C 40 41 41 C C A . n A 1 41 C 41 42 42 C C A . n A 1 42 U 42 43 43 U U A . n A 1 43 A 43 44 44 A A A . n A 1 44 C 44 45 45 C C A . n A 1 45 U 45 46 46 U U A . n A 1 46 G 46 47 47 G G A . n A 1 47 G 47 48 48 G G A . n A 1 48 A 48 49 49 A A A . n A 1 49 G 49 50 50 G G A . n A 1 50 C 50 51 51 C C A . n A 1 51 C 51 52 52 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP 1 101 1 GTP GTP A . C 3 MG 1 102 1 MG MG A . D 3 MG 1 103 2 MG MG A . E 3 MG 1 104 3 MG MG A . F 3 MG 1 105 7 MG MG A . G 3 MG 1 106 9 MG MG A . H 3 MG 1 107 10 MG MG A . I 3 MG 1 108 11 MG MG A . J 3 MG 1 109 12 MG MG A . K 4 ADP 1 110 1 ADP ADP A . L 5 HOH 1 201 83 HOH HOH A . L 5 HOH 2 202 55 HOH HOH A . L 5 HOH 3 203 1 HOH HOH A . L 5 HOH 4 204 18 HOH HOH A . L 5 HOH 5 205 79 HOH HOH A . L 5 HOH 6 206 84 HOH HOH A . L 5 HOH 7 207 80 HOH HOH A . L 5 HOH 8 208 12 HOH HOH A . L 5 HOH 9 209 11 HOH HOH A . L 5 HOH 10 210 90 HOH HOH A . L 5 HOH 11 211 41 HOH HOH A . L 5 HOH 12 212 81 HOH HOH A . L 5 HOH 13 213 53 HOH HOH A . L 5 HOH 14 214 8 HOH HOH A . L 5 HOH 15 215 44 HOH HOH A . L 5 HOH 16 216 45 HOH HOH A . L 5 HOH 17 217 78 HOH HOH A . L 5 HOH 18 218 85 HOH HOH A . L 5 HOH 19 219 6 HOH HOH A . L 5 HOH 20 220 7 HOH HOH A . L 5 HOH 21 221 2 HOH HOH A . L 5 HOH 22 222 61 HOH HOH A . L 5 HOH 23 223 66 HOH HOH A . L 5 HOH 24 224 46 HOH HOH A . L 5 HOH 25 225 43 HOH HOH A . L 5 HOH 26 226 22 HOH HOH A . L 5 HOH 27 227 3 HOH HOH A . L 5 HOH 28 228 82 HOH HOH A . L 5 HOH 29 229 60 HOH HOH A . L 5 HOH 30 230 67 HOH HOH A . L 5 HOH 31 231 15 HOH HOH A . L 5 HOH 32 232 64 HOH HOH A . L 5 HOH 33 233 23 HOH HOH A . L 5 HOH 34 234 86 HOH HOH A . L 5 HOH 35 235 20 HOH HOH A . L 5 HOH 36 236 65 HOH HOH A . L 5 HOH 37 237 63 HOH HOH A . L 5 HOH 38 238 16 HOH HOH A . L 5 HOH 39 239 9 HOH HOH A . L 5 HOH 40 240 62 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1550 ? 1 MORE -58 ? 1 'SSA (A^2)' 9410 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 211 ? 1_555 90.1 ? 2 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 215 ? 1_555 70.5 ? 3 O ? L HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 215 ? 1_555 138.5 ? 4 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 216 ? 1_555 131.4 ? 5 O ? L HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 216 ? 1_555 110.6 ? 6 O ? L HOH . ? A HOH 215 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 216 ? 1_555 109.7 ? 7 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 78.8 ? 8 O ? L HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 71.6 ? 9 O ? L HOH . ? A HOH 215 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 68.8 ? 10 O ? L HOH . ? A HOH 216 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 148.7 ? 11 OP2 ? A A 6 ? A A 7 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 150.0 ? 12 O ? L HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 79.7 ? 13 O ? L HOH . ? A HOH 215 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 98.8 ? 14 O ? L HOH . ? A HOH 216 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 78.3 ? 15 O ? L HOH . ? A HOH 224 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? L HOH . ? A HOH 225 ? 1_555 71.3 ? 16 OP2 ? A A 7 ? A A 8 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 OP2 ? A C 8 ? A C 9 ? 1_555 87.8 ? 17 OP2 ? A A 7 ? A A 8 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 207 ? 1_555 74.6 ? 18 OP2 ? A C 8 ? A C 9 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 207 ? 1_555 80.8 ? 19 OP2 ? A A 7 ? A A 8 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 212 ? 1_555 99.1 ? 20 OP2 ? A C 8 ? A C 9 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 212 ? 1_555 150.3 ? 21 O ? L HOH . ? A HOH 207 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 212 ? 1_555 73.5 ? 22 OP2 ? A A 7 ? A A 8 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 213 ? 1_555 153.0 ? 23 OP2 ? A C 8 ? A C 9 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 213 ? 1_555 82.7 ? 24 O ? L HOH . ? A HOH 207 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 213 ? 1_555 78.9 ? 25 O ? L HOH . ? A HOH 212 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? L HOH . ? A HOH 213 ? 1_555 78.2 ? 26 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 OP1 ? A U 16 ? A U 17 ? 1_555 45.1 ? 27 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 203 ? 1_555 74.3 ? 28 OP1 ? A U 16 ? A U 17 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 203 ? 1_555 33.5 ? 29 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 219 ? 1_555 73.1 ? 30 OP1 ? A U 16 ? A U 17 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 219 ? 1_555 59.8 ? 31 O ? L HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 219 ? 1_555 79.5 ? 32 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 220 ? 2_455 80.7 ? 33 OP1 ? A U 16 ? A U 17 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 220 ? 2_455 97.1 ? 34 O ? L HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 220 ? 2_455 87.7 ? 35 O ? L HOH . ? A HOH 219 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 220 ? 2_455 153.1 ? 36 OP2 ? A A 10 ? A A 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 81.5 ? 37 OP1 ? A U 16 ? A U 17 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 126.1 ? 38 O ? L HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 153.4 ? 39 O ? L HOH . ? A HOH 219 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 104.0 ? 40 O ? L HOH . ? A HOH 220 ? 2_455 MG ? C MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 77.5 ? 41 O6 ? A G 46 ? A G 47 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 201 ? 1_555 76.6 ? 42 O6 ? A G 46 ? A G 47 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 206 ? 1_555 81.6 ? 43 O ? L HOH . ? A HOH 201 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 206 ? 1_555 75.2 ? 44 O6 ? A G 46 ? A G 47 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 82.0 ? 45 O ? L HOH . ? A HOH 201 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 103.4 ? 46 O ? L HOH . ? A HOH 206 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 163.4 ? 47 O6 ? A G 46 ? A G 47 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 228 ? 1_555 107.1 ? 48 O ? L HOH . ? A HOH 201 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 228 ? 1_555 169.2 ? 49 O ? L HOH . ? A HOH 206 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 228 ? 1_555 115.2 ? 50 O ? L HOH . ? A HOH 218 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 228 ? 1_555 67.6 ? 51 O6 ? A G 46 ? A G 47 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 234 ? 1_555 153.2 ? 52 O ? L HOH . ? A HOH 201 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 234 ? 1_555 82.0 ? 53 O ? L HOH . ? A HOH 206 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 234 ? 1_555 108.4 ? 54 O ? L HOH . ? A HOH 218 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 234 ? 1_555 87.6 ? 55 O ? L HOH . ? A HOH 228 ? 1_555 MG ? J MG . ? A MG 109 ? 1_555 O ? L HOH . ? A HOH 234 ? 1_555 91.4 ? 56 O ? L HOH . ? A HOH 208 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 69.3 ? 57 O ? L HOH . ? A HOH 208 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 214 ? 1_555 91.7 ? 58 O ? L HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 214 ? 1_555 75.6 ? 59 O ? L HOH . ? A HOH 208 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 231 ? 1_555 83.7 ? 60 O ? L HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 231 ? 1_555 150.3 ? 61 O ? L HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 231 ? 1_555 93.7 ? 62 O ? L HOH . ? A HOH 208 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 162.2 ? 63 O ? L HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 94.7 ? 64 O ? L HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 76.3 ? 65 O ? L HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 109.8 ? 66 O ? L HOH . ? A HOH 208 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 239 ? 1_555 88.5 ? 67 O ? L HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 239 ? 1_555 75.2 ? 68 O ? L HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 239 ? 1_555 148.7 ? 69 O ? L HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 239 ? 1_555 117.4 ? 70 O ? L HOH . ? A HOH 238 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 239 ? 1_555 94.9 ? 71 O ? L HOH . ? A HOH 204 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 222 ? 8_544 71.7 ? 72 O ? L HOH . ? A HOH 204 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 226 ? 1_555 73.9 ? 73 O ? L HOH . ? A HOH 222 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 226 ? 1_555 92.6 ? 74 O ? L HOH . ? A HOH 204 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 229 ? 8_544 80.6 ? 75 O ? L HOH . ? A HOH 222 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 229 ? 8_544 137.9 ? 76 O ? L HOH . ? A HOH 226 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 229 ? 8_544 109.8 ? 77 O ? L HOH . ? A HOH 204 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 233 ? 8_544 80.2 ? 78 O ? L HOH . ? A HOH 222 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 233 ? 8_544 67.8 ? 79 O ? L HOH . ? A HOH 226 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 233 ? 8_544 151.5 ? 80 O ? L HOH . ? A HOH 229 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 233 ? 8_544 76.8 ? 81 O ? L HOH . ? A HOH 204 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 235 ? 1_555 173.8 ? 82 O ? L HOH . ? A HOH 222 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 235 ? 1_555 104.7 ? 83 O ? L HOH . ? A HOH 226 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 235 ? 1_555 101.5 ? 84 O ? L HOH . ? A HOH 229 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 235 ? 1_555 105.1 ? 85 O ? L HOH . ? A HOH 233 ? 8_544 MG ? E MG . ? A MG 104 ? 1_555 O ? L HOH . ? A HOH 235 ? 1_555 103.3 ? 86 O1B ? K ADP . ? A ADP 110 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O1A ? K ADP . ? A ADP 110 ? 1_555 82.4 ? 87 O1B ? K ADP . ? A ADP 110 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 111.7 ? 88 O1A ? K ADP . ? A ADP 110 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 151.3 ? 89 O1B ? K ADP . ? A ADP 110 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 148.8 ? 90 O1A ? K ADP . ? A ADP 110 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 78.9 ? 91 O ? L HOH . ? A HOH 202 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 76.8 ? 92 O1B ? K ADP . ? A ADP 110 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 87.1 ? 93 O1A ? K ADP . ? A ADP 110 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 80.2 ? 94 O ? L HOH . ? A HOH 202 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 75.9 ? 95 O ? L HOH . ? A HOH 205 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 65.3 ? 96 O ? L HOH . ? A HOH 223 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 230 ? 1_555 88.5 ? 97 O ? L HOH . ? A HOH 223 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 232 ? 8_544 73.4 ? 98 O ? L HOH . ? A HOH 230 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 232 ? 8_544 91.7 ? 99 O ? L HOH . ? A HOH 223 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 236 ? 8_544 49.0 ? 100 O ? L HOH . ? A HOH 230 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 236 ? 8_544 82.9 ? 101 O ? L HOH . ? A HOH 232 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 236 ? 8_544 122.2 ? 102 O ? L HOH . ? A HOH 223 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 237 ? 8_544 60.2 ? 103 O ? L HOH . ? A HOH 230 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 237 ? 8_544 126.8 ? 104 O ? L HOH . ? A HOH 232 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 237 ? 8_544 115.2 ? 105 O ? L HOH . ? A HOH 236 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 237 ? 8_544 43.9 ? 106 O ? L HOH . ? A HOH 223 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 240 ? 8_544 142.5 ? 107 O ? L HOH . ? A HOH 230 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 240 ? 8_544 128.2 ? 108 O ? L HOH . ? A HOH 232 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 240 ? 8_544 95.8 ? 109 O ? L HOH . ? A HOH 236 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 240 ? 8_544 131.7 ? 110 O ? L HOH . ? A HOH 237 ? 8_544 MG ? H MG . ? A MG 107 ? 1_555 O ? L HOH . ? A HOH 240 ? 8_544 95.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-11-25 2 'Structure model' 1 1 2020-12-02 3 'Structure model' 1 2 2020-12-23 4 'Structure model' 1 3 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 7D7X _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 236 ? ? O A HOH 237 ? ? 1.65 2 1 OP1 A A 8 ? ? MG A MG 106 ? ? 1.67 3 1 O A HOH 223 ? ? O A HOH 236 ? ? 1.73 4 1 O A HOH 223 ? ? O A HOH 237 ? ? 2.11 5 1 O A HOH 229 ? ? O A HOH 232 ? ? 2.19 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADP PB P N N 38 ADP O1B O N N 39 ADP O2B O N N 40 ADP O3B O N N 41 ADP PA P N S 42 ADP O1A O N N 43 ADP O2A O N N 44 ADP O3A O N N 45 ADP "O5'" O N N 46 ADP "C5'" C N N 47 ADP "C4'" C N R 48 ADP "O4'" O N N 49 ADP "C3'" C N S 50 ADP "O3'" O N N 51 ADP "C2'" C N R 52 ADP "O2'" O N N 53 ADP "C1'" C N R 54 ADP N9 N Y N 55 ADP C8 C Y N 56 ADP N7 N Y N 57 ADP C5 C Y N 58 ADP C6 C Y N 59 ADP N6 N N N 60 ADP N1 N Y N 61 ADP C2 C Y N 62 ADP N3 N Y N 63 ADP C4 C Y N 64 ADP HOB2 H N N 65 ADP HOB3 H N N 66 ADP HOA2 H N N 67 ADP "H5'1" H N N 68 ADP "H5'2" H N N 69 ADP "H4'" H N N 70 ADP "H3'" H N N 71 ADP "HO3'" H N N 72 ADP "H2'" H N N 73 ADP "HO2'" H N N 74 ADP "H1'" H N N 75 ADP H8 H N N 76 ADP HN61 H N N 77 ADP HN62 H N N 78 ADP H2 H N N 79 C OP3 O N N 80 C P P N N 81 C OP1 O N N 82 C OP2 O N N 83 C "O5'" O N N 84 C "C5'" C N N 85 C "C4'" C N R 86 C "O4'" O N N 87 C "C3'" C N S 88 C "O3'" O N N 89 C "C2'" C N R 90 C "O2'" O N N 91 C "C1'" C N R 92 C N1 N N N 93 C C2 C N N 94 C O2 O N N 95 C N3 N N N 96 C C4 C N N 97 C N4 N N N 98 C C5 C N N 99 C C6 C N N 100 C HOP3 H N N 101 C HOP2 H N N 102 C "H5'" H N N 103 C "H5''" H N N 104 C "H4'" H N N 105 C "H3'" H N N 106 C "HO3'" H N N 107 C "H2'" H N N 108 C "HO2'" H N N 109 C "H1'" H N N 110 C H41 H N N 111 C H42 H N N 112 C H5 H N N 113 C H6 H N N 114 G OP3 O N N 115 G P P N N 116 G OP1 O N N 117 G OP2 O N N 118 G "O5'" O N N 119 G "C5'" C N N 120 G "C4'" C N R 121 G "O4'" O N N 122 G "C3'" C N S 123 G "O3'" O N N 124 G "C2'" C N R 125 G "O2'" O N N 126 G "C1'" C N R 127 G N9 N Y N 128 G C8 C Y N 129 G N7 N Y N 130 G C5 C Y N 131 G C6 C N N 132 G O6 O N N 133 G N1 N N N 134 G C2 C N N 135 G N2 N N N 136 G N3 N N N 137 G C4 C Y N 138 G HOP3 H N N 139 G HOP2 H N N 140 G "H5'" H N N 141 G "H5''" H N N 142 G "H4'" H N N 143 G "H3'" H N N 144 G "HO3'" H N N 145 G "H2'" H N N 146 G "HO2'" H N N 147 G "H1'" H N N 148 G H8 H N N 149 G H1 H N N 150 G H21 H N N 151 G H22 H N N 152 GTP PG P N N 153 GTP O1G O N N 154 GTP O2G O N N 155 GTP O3G O N N 156 GTP O3B O N N 157 GTP PB P N N 158 GTP O1B O N N 159 GTP O2B O N N 160 GTP O3A O N N 161 GTP PA P N N 162 GTP O1A O N N 163 GTP O2A O N N 164 GTP "O5'" O N N 165 GTP "C5'" C N N 166 GTP "C4'" C N R 167 GTP "O4'" O N N 168 GTP "C3'" C N S 169 GTP "O3'" O N N 170 GTP "C2'" C N R 171 GTP "O2'" O N N 172 GTP "C1'" C N R 173 GTP N9 N Y N 174 GTP C8 C Y N 175 GTP N7 N Y N 176 GTP C5 C Y N 177 GTP C6 C N N 178 GTP O6 O N N 179 GTP N1 N N N 180 GTP C2 C N N 181 GTP N2 N N N 182 GTP N3 N N N 183 GTP C4 C Y N 184 GTP HOG2 H N N 185 GTP HOG3 H N N 186 GTP HOB2 H N N 187 GTP HOA2 H N N 188 GTP "H5'" H N N 189 GTP "H5''" H N N 190 GTP "H4'" H N N 191 GTP "H3'" H N N 192 GTP "HO3'" H N N 193 GTP "H2'" H N N 194 GTP "HO2'" H N N 195 GTP "H1'" H N N 196 GTP H8 H N N 197 GTP HN1 H N N 198 GTP HN21 H N N 199 GTP HN22 H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 MG MG MG N N 204 U OP3 O N N 205 U P P N N 206 U OP1 O N N 207 U OP2 O N N 208 U "O5'" O N N 209 U "C5'" C N N 210 U "C4'" C N R 211 U "O4'" O N N 212 U "C3'" C N S 213 U "O3'" O N N 214 U "C2'" C N R 215 U "O2'" O N N 216 U "C1'" C N R 217 U N1 N N N 218 U C2 C N N 219 U O2 O N N 220 U N3 N N N 221 U C4 C N N 222 U O4 O N N 223 U C5 C N N 224 U C6 C N N 225 U HOP3 H N N 226 U HOP2 H N N 227 U "H5'" H N N 228 U "H5''" H N N 229 U "H4'" H N N 230 U "H3'" H N N 231 U "HO3'" H N N 232 U "H2'" H N N 233 U "HO2'" H N N 234 U "H1'" H N N 235 U H3 H N N 236 U H5 H N N 237 U H6 H N N 238 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADP PB O1B doub N N 40 ADP PB O2B sing N N 41 ADP PB O3B sing N N 42 ADP PB O3A sing N N 43 ADP O2B HOB2 sing N N 44 ADP O3B HOB3 sing N N 45 ADP PA O1A doub N N 46 ADP PA O2A sing N N 47 ADP PA O3A sing N N 48 ADP PA "O5'" sing N N 49 ADP O2A HOA2 sing N N 50 ADP "O5'" "C5'" sing N N 51 ADP "C5'" "C4'" sing N N 52 ADP "C5'" "H5'1" sing N N 53 ADP "C5'" "H5'2" sing N N 54 ADP "C4'" "O4'" sing N N 55 ADP "C4'" "C3'" sing N N 56 ADP "C4'" "H4'" sing N N 57 ADP "O4'" "C1'" sing N N 58 ADP "C3'" "O3'" sing N N 59 ADP "C3'" "C2'" sing N N 60 ADP "C3'" "H3'" sing N N 61 ADP "O3'" "HO3'" sing N N 62 ADP "C2'" "O2'" sing N N 63 ADP "C2'" "C1'" sing N N 64 ADP "C2'" "H2'" sing N N 65 ADP "O2'" "HO2'" sing N N 66 ADP "C1'" N9 sing N N 67 ADP "C1'" "H1'" sing N N 68 ADP N9 C8 sing Y N 69 ADP N9 C4 sing Y N 70 ADP C8 N7 doub Y N 71 ADP C8 H8 sing N N 72 ADP N7 C5 sing Y N 73 ADP C5 C6 sing Y N 74 ADP C5 C4 doub Y N 75 ADP C6 N6 sing N N 76 ADP C6 N1 doub Y N 77 ADP N6 HN61 sing N N 78 ADP N6 HN62 sing N N 79 ADP N1 C2 sing Y N 80 ADP C2 N3 doub Y N 81 ADP C2 H2 sing N N 82 ADP N3 C4 sing Y N 83 C OP3 P sing N N 84 C OP3 HOP3 sing N N 85 C P OP1 doub N N 86 C P OP2 sing N N 87 C P "O5'" sing N N 88 C OP2 HOP2 sing N N 89 C "O5'" "C5'" sing N N 90 C "C5'" "C4'" sing N N 91 C "C5'" "H5'" sing N N 92 C "C5'" "H5''" sing N N 93 C "C4'" "O4'" sing N N 94 C "C4'" "C3'" sing N N 95 C "C4'" "H4'" sing N N 96 C "O4'" "C1'" sing N N 97 C "C3'" "O3'" sing N N 98 C "C3'" "C2'" sing N N 99 C "C3'" "H3'" sing N N 100 C "O3'" "HO3'" sing N N 101 C "C2'" "O2'" sing N N 102 C "C2'" "C1'" sing N N 103 C "C2'" "H2'" sing N N 104 C "O2'" "HO2'" sing N N 105 C "C1'" N1 sing N N 106 C "C1'" "H1'" sing N N 107 C N1 C2 sing N N 108 C N1 C6 sing N N 109 C C2 O2 doub N N 110 C C2 N3 sing N N 111 C N3 C4 doub N N 112 C C4 N4 sing N N 113 C C4 C5 sing N N 114 C N4 H41 sing N N 115 C N4 H42 sing N N 116 C C5 C6 doub N N 117 C C5 H5 sing N N 118 C C6 H6 sing N N 119 G OP3 P sing N N 120 G OP3 HOP3 sing N N 121 G P OP1 doub N N 122 G P OP2 sing N N 123 G P "O5'" sing N N 124 G OP2 HOP2 sing N N 125 G "O5'" "C5'" sing N N 126 G "C5'" "C4'" sing N N 127 G "C5'" "H5'" sing N N 128 G "C5'" "H5''" sing N N 129 G "C4'" "O4'" sing N N 130 G "C4'" "C3'" sing N N 131 G "C4'" "H4'" sing N N 132 G "O4'" "C1'" sing N N 133 G "C3'" "O3'" sing N N 134 G "C3'" "C2'" sing N N 135 G "C3'" "H3'" sing N N 136 G "O3'" "HO3'" sing N N 137 G "C2'" "O2'" sing N N 138 G "C2'" "C1'" sing N N 139 G "C2'" "H2'" sing N N 140 G "O2'" "HO2'" sing N N 141 G "C1'" N9 sing N N 142 G "C1'" "H1'" sing N N 143 G N9 C8 sing Y N 144 G N9 C4 sing Y N 145 G C8 N7 doub Y N 146 G C8 H8 sing N N 147 G N7 C5 sing Y N 148 G C5 C6 sing N N 149 G C5 C4 doub Y N 150 G C6 O6 doub N N 151 G C6 N1 sing N N 152 G N1 C2 sing N N 153 G N1 H1 sing N N 154 G C2 N2 sing N N 155 G C2 N3 doub N N 156 G N2 H21 sing N N 157 G N2 H22 sing N N 158 G N3 C4 sing N N 159 GTP PG O1G doub N N 160 GTP PG O2G sing N N 161 GTP PG O3G sing N N 162 GTP PG O3B sing N N 163 GTP O2G HOG2 sing N N 164 GTP O3G HOG3 sing N N 165 GTP O3B PB sing N N 166 GTP PB O1B doub N N 167 GTP PB O2B sing N N 168 GTP PB O3A sing N N 169 GTP O2B HOB2 sing N N 170 GTP O3A PA sing N N 171 GTP PA O1A doub N N 172 GTP PA O2A sing N N 173 GTP PA "O5'" sing N N 174 GTP O2A HOA2 sing N N 175 GTP "O5'" "C5'" sing N N 176 GTP "C5'" "C4'" sing N N 177 GTP "C5'" "H5'" sing N N 178 GTP "C5'" "H5''" sing N N 179 GTP "C4'" "O4'" sing N N 180 GTP "C4'" "C3'" sing N N 181 GTP "C4'" "H4'" sing N N 182 GTP "O4'" "C1'" sing N N 183 GTP "C3'" "O3'" sing N N 184 GTP "C3'" "C2'" sing N N 185 GTP "C3'" "H3'" sing N N 186 GTP "O3'" "HO3'" sing N N 187 GTP "C2'" "O2'" sing N N 188 GTP "C2'" "C1'" sing N N 189 GTP "C2'" "H2'" sing N N 190 GTP "O2'" "HO2'" sing N N 191 GTP "C1'" N9 sing N N 192 GTP "C1'" "H1'" sing N N 193 GTP N9 C8 sing Y N 194 GTP N9 C4 sing Y N 195 GTP C8 N7 doub Y N 196 GTP C8 H8 sing N N 197 GTP N7 C5 sing Y N 198 GTP C5 C6 sing N N 199 GTP C5 C4 doub Y N 200 GTP C6 O6 doub N N 201 GTP C6 N1 sing N N 202 GTP N1 C2 sing N N 203 GTP N1 HN1 sing N N 204 GTP C2 N2 sing N N 205 GTP C2 N3 doub N N 206 GTP N2 HN21 sing N N 207 GTP N2 HN22 sing N N 208 GTP N3 C4 sing N N 209 HOH O H1 sing N N 210 HOH O H2 sing N N 211 U OP3 P sing N N 212 U OP3 HOP3 sing N N 213 U P OP1 doub N N 214 U P OP2 sing N N 215 U P "O5'" sing N N 216 U OP2 HOP2 sing N N 217 U "O5'" "C5'" sing N N 218 U "C5'" "C4'" sing N N 219 U "C5'" "H5'" sing N N 220 U "C5'" "H5''" sing N N 221 U "C4'" "O4'" sing N N 222 U "C4'" "C3'" sing N N 223 U "C4'" "H4'" sing N N 224 U "O4'" "C1'" sing N N 225 U "C3'" "O3'" sing N N 226 U "C3'" "C2'" sing N N 227 U "C3'" "H3'" sing N N 228 U "O3'" "HO3'" sing N N 229 U "C2'" "O2'" sing N N 230 U "C2'" "C1'" sing N N 231 U "C2'" "H2'" sing N N 232 U "O2'" "HO2'" sing N N 233 U "C1'" N1 sing N N 234 U "C1'" "H1'" sing N N 235 U N1 C2 sing N N 236 U N1 C6 sing N N 237 U C2 O2 doub N N 238 U C2 N3 sing N N 239 U N3 C4 sing N N 240 U N3 H3 sing N N 241 U C4 O4 doub N N 242 U C4 C5 sing N N 243 U C5 C6 doub N N 244 U C5 H5 sing N N 245 U C6 H6 sing N N 246 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7D7X 'double helix' 7D7X 'a-form double helix' 7D7X tetraloop 7D7X 'bulge loop' 7D7X 'mismatched base pair' 7D7X 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 50 1_555 -0.579 -0.548 0.480 2.213 -11.232 0.381 1 A_G2:C51_A A 2 ? A 51 ? 19 1 1 A C 2 1_555 A G 49 1_555 -0.220 -0.513 0.140 1.289 -18.650 -10.044 2 A_C3:G50_A A 3 ? A 50 ? 19 1 1 A U 3 1_555 A A 48 1_555 -0.435 -0.058 0.437 -3.708 -18.037 7.096 3 A_U4:A49_A A 4 ? A 49 ? 20 1 1 A U 4 1_555 A G 47 1_555 2.418 -0.466 0.435 4.173 -14.366 1.465 4 A_U5:G48_A A 5 ? A 48 ? 28 1 1 A C 5 1_555 A G 46 1_555 -0.051 -0.192 0.117 9.789 -16.519 -0.226 5 A_C6:G47_A A 6 ? A 47 ? 19 1 1 A A 6 1_555 A U 45 1_555 0.014 -0.112 0.372 2.396 -7.567 -4.551 6 A_A7:U46_A A 7 ? A 46 ? 20 1 1 A G 15 1_555 A C 44 1_555 0.199 -0.191 -0.088 -13.541 -15.632 0.567 7 A_G16:C45_A A 16 ? A 45 ? 19 1 1 A U 16 1_555 A A 43 1_555 -0.650 -0.167 0.419 -17.261 -9.046 0.063 8 A_U17:A44_A A 17 ? A 44 ? 20 1 1 A A 17 1_555 A U 42 1_555 0.127 0.126 0.352 -2.224 -7.556 6.519 9 A_A18:U43_A A 18 ? A 43 ? 20 1 1 A G 18 1_555 A C 41 1_555 -0.177 -0.510 0.074 -1.240 -9.269 -0.505 10 A_G19:C42_A A 19 ? A 42 ? 19 1 1 A G 19 1_555 A C 40 1_555 -1.024 -0.153 0.213 -7.995 -17.526 6.312 11 A_G20:C41_A A 20 ? A 41 ? 19 1 1 A U 20 1_555 A A 39 1_555 0.677 -0.287 0.136 -0.637 -18.921 6.997 12 A_U21:A40_A A 21 ? A 40 ? 20 1 1 A G 21 1_555 A C 38 1_555 0.300 -0.218 0.135 1.741 -3.323 -3.344 13 A_G22:C39_A A 22 ? A 39 ? 19 1 1 A G 22 1_555 A C 36 1_555 0.332 0.179 0.332 3.956 -2.532 -0.484 14 A_G23:C37_A A 23 ? A 37 ? 19 1 1 A G 23 1_555 A A 34 1_555 -0.567 1.837 -0.062 -0.404 -10.704 -17.367 15 A_G24:A35_A A 24 ? A 35 ? 8 1 1 A G 24 1_555 A C 33 1_555 -0.245 -0.312 0.627 7.250 -10.150 -4.630 16 A_G25:C34_A A 25 ? A 34 ? 19 1 1 A A 25 1_555 A U 32 1_555 -0.103 -0.247 0.453 9.860 -19.229 2.959 17 A_A26:U33_A A 26 ? A 33 ? 20 1 1 A C 26 1_555 A G 31 1_555 0.585 -0.164 0.436 2.603 -7.278 6.223 18 A_C27:G32_A A 27 ? A 32 ? 19 1 1 A G 27 1_555 A A 30 1_555 6.922 -5.201 0.273 21.747 -0.534 -22.485 19 A_G28:A31_A A 28 ? A 31 ? ? ? 1 A C 12 1_555 A G 37 1_555 0.401 -0.314 0.096 8.313 -1.469 -0.777 20 A_C13:G38_A A 13 ? A 38 ? 19 1 1 A C 13 1_555 A G 35 1_555 0.519 -0.119 0.131 -4.322 -0.996 1.857 21 A_C14:G36_A A 14 ? A 36 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 50 1_555 A C 2 1_555 A G 49 1_555 -0.936 -1.941 3.118 0.467 1.895 32.119 -3.818 1.766 2.988 3.422 -0.842 32.177 1 AA_G2C3:G50C51_AA A 2 ? A 51 ? A 3 ? A 50 ? 1 A C 2 1_555 A G 49 1_555 A U 3 1_555 A A 48 1_555 0.687 -1.637 3.374 -1.526 6.813 31.174 -4.181 -1.519 2.924 12.481 2.796 31.927 2 AA_C3U4:A49G50_AA A 3 ? A 50 ? A 4 ? A 49 ? 1 A U 3 1_555 A A 48 1_555 A U 4 1_555 A G 47 1_555 -0.154 -0.738 3.103 -1.188 1.633 44.765 -1.109 0.100 3.078 2.143 1.559 44.809 3 AA_U4U5:G48A49_AA A 4 ? A 49 ? A 5 ? A 48 ? 1 A U 4 1_555 A G 47 1_555 A C 5 1_555 A G 46 1_555 0.037 -2.679 2.664 3.093 7.059 18.320 -9.990 0.866 1.520 21.005 -9.203 19.862 4 AA_U5C6:G47G48_AA A 5 ? A 48 ? A 6 ? A 47 ? 1 A C 5 1_555 A G 46 1_555 A A 6 1_555 A U 45 1_555 -1.021 -1.199 3.234 -3.180 15.342 38.004 -3.282 1.132 2.651 22.431 4.650 40.997 5 AA_C6A7:U46G47_AA A 6 ? A 47 ? A 7 ? A 46 ? 1 A A 6 1_555 A U 45 1_555 A G 15 1_555 A C 44 1_555 0.475 -2.590 3.524 6.017 11.240 35.265 -5.475 0.030 2.648 17.848 -9.555 37.429 6 AA_A7G16:C45U46_AA A 7 ? A 46 ? A 16 ? A 45 ? 1 A G 15 1_555 A C 44 1_555 A U 16 1_555 A A 43 1_555 -0.764 -2.063 3.268 -4.370 1.779 28.430 -4.543 0.562 3.214 3.592 8.821 28.811 7 AA_G16U17:A44C45_AA A 16 ? A 45 ? A 17 ? A 44 ? 1 A U 16 1_555 A A 43 1_555 A A 17 1_555 A U 42 1_555 0.271 -1.142 2.803 -0.305 3.114 33.323 -2.416 -0.513 2.686 5.416 0.531 33.466 8 AA_U17A18:U43A44_AA A 17 ? A 44 ? A 18 ? A 43 ? 1 A A 17 1_555 A U 42 1_555 A G 18 1_555 A C 41 1_555 0.303 -1.821 3.215 2.079 3.524 26.861 -4.720 -0.147 2.970 7.530 -4.443 27.166 9 AA_A18G19:C42U43_AA A 18 ? A 43 ? A 19 ? A 42 ? 1 A G 18 1_555 A C 41 1_555 A G 19 1_555 A C 40 1_555 0.944 -2.084 3.281 3.739 4.755 28.435 -5.166 -1.084 2.997 9.544 -7.505 29.058 10 AA_G19G20:C41C42_AA A 19 ? A 42 ? A 20 ? A 41 ? 1 A G 19 1_555 A C 40 1_555 A U 20 1_555 A A 39 1_555 -0.253 -1.286 3.153 0.714 4.389 36.884 -2.571 0.487 2.981 6.906 -1.123 37.142 11 AA_G20U21:A40C41_AA A 20 ? A 41 ? A 21 ? A 40 ? 1 A U 20 1_555 A A 39 1_555 A G 21 1_555 A C 38 1_555 -0.147 -1.415 3.091 -0.023 8.762 29.467 -4.194 0.273 2.574 16.765 0.045 30.715 12 AA_U21G22:C39A40_AA A 21 ? A 40 ? A 22 ? A 39 ? 1 A G 21 1_555 A C 38 1_555 A G 22 1_555 A C 36 1_555 2.346 -1.500 3.012 1.543 5.611 42.578 -2.552 -3.066 2.880 7.684 -2.113 42.956 13 AA_G22G23:C37C39_AA A 22 ? A 39 ? A 23 ? A 37 ? 1 A G 22 1_555 A C 36 1_555 A G 23 1_555 A A 34 1_555 -0.429 -4.242 3.215 1.715 2.760 22.764 -11.518 1.620 2.649 6.948 -4.317 22.992 14 AA_G23G24:A35C37_AA A 23 ? A 37 ? A 24 ? A 35 ? 1 A G 23 1_555 A A 34 1_555 A G 24 1_555 A C 33 1_555 0.477 -1.431 3.004 -9.915 4.540 35.665 -2.769 -1.898 2.589 7.207 15.741 37.243 15 AA_G24G25:C34A35_AA A 24 ? A 35 ? A 25 ? A 34 ? 1 A G 24 1_555 A C 33 1_555 A A 25 1_555 A U 32 1_555 0.396 -1.203 3.125 1.606 2.154 36.947 -2.167 -0.420 3.067 3.394 -2.530 37.041 16 AA_G25A26:U33C34_AA A 25 ? A 34 ? A 26 ? A 33 ? 1 A A 25 1_555 A U 32 1_555 A C 26 1_555 A G 31 1_555 0.501 -1.346 3.512 -0.526 2.125 36.279 -2.472 -0.882 3.423 3.408 0.844 36.343 17 AA_A26C27:G32U33_AA A 26 ? A 33 ? A 27 ? A 32 ? 1 A C 26 1_555 A G 31 1_555 A G 27 1_555 A A 30 1_555 -2.932 -0.977 2.835 -0.696 3.072 51.194 -1.312 3.346 2.813 3.551 0.804 51.284 18 AA_C27G28:A31G32_AA A 27 ? A 32 ? A 28 ? A 31 ? 1 A C 12 1_555 A G 37 1_555 A C 13 1_555 A G 35 1_555 2.082 -1.624 3.358 3.147 6.374 53.053 -2.213 -2.112 3.267 7.099 -3.505 53.492 19 AA_C13C14:G36G38_AA A 13 ? A 38 ? A 14 ? A 36 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ADP ? ? ADP ? ? 'SUBJECT OF INVESTIGATION' ? 2 MG ? ? MG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 'MAGNESIUM ION' MG 4 "ADENOSINE-5'-DIPHOSPHATE" ADP 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7D7V _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #