HEADER RNA 06-OCT-20 7D7Z TITLE CRYSTAL STRUCTURE OF THE DOMAIN1 OF NAD+ RIBOSWITCH WITH NICOTINAMIDE TITLE 2 ADENINE DINUCLEOTIDE (NAD+), SOAKED IN MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 18GAAA(52-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RIBOSWITCH, RNA STRUCTURE, RNA FOLDING, RNA-LIGAND INTERACTIONS, RNA KEYWDS 2 CRYSTALLOGRAPHY, RNA EXPDTA X-RAY DIFFRACTION AUTHOR H.CHEN,A.M.REN REVDAT 4 29-NOV-23 7D7Z 1 REMARK REVDAT 3 23-DEC-20 7D7Z 1 JRNL REVDAT 2 02-DEC-20 7D7Z 1 JRNL REVDAT 1 25-NOV-20 7D7Z 0 JRNL AUTH H.CHEN,M.EGGER,X.XU,L.FLEMMICH,O.KRASHENININA,A.SUN, JRNL AUTH 2 R.MICURA,A.REN JRNL TITL STRUCTURAL DISTINCTIONS BETWEEN NAD+ RIBOSWITCH DOMAINS 1 JRNL TITL 2 AND 2 DETERMINE DIFFERENTIAL FOLDING AND LIGAND BINDING. JRNL REF NUCLEIC ACIDS RES. V. 48 12394 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 33170270 JRNL DOI 10.1093/NAR/GKAA1029 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 10067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.7588 - 2.6000 0.00 0 150 0.4226 0.4956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 1.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7D7V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 1.6 M MGSO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.90200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.65900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.28200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.90200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.65900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.28200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.90200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.65900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.28200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.90200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 28.65900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.28200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 124 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 252 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 250 O HOH A 281 1.89 REMARK 500 O HOH A 247 O HOH A 256 1.94 REMARK 500 O HOH A 228 O HOH A 284 2.01 REMARK 500 O HOH A 208 O HOH A 271 2.06 REMARK 500 OP2 C A 34 O HOH A 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 260 O HOH A 260 2455 1.76 REMARK 500 O HOH A 202 O HOH A 227 2455 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 291 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 292 DISTANCE = 6.79 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 111 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 2 OP2 REMARK 620 2 GTP A 101 O1B 167.3 REMARK 620 3 GTP A 101 O3A 114.1 58.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 118 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 7 OP2 REMARK 620 2 HOH A 204 O 104.1 REMARK 620 3 HOH A 231 O 113.5 73.9 REMARK 620 4 HOH A 243 O 79.2 82.1 154.8 REMARK 620 5 HOH A 255 O 170.8 70.4 72.6 92.5 REMARK 620 6 HOH A 274 O 106.3 134.5 63.2 136.4 82.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 125 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 8 OP2 REMARK 620 2 C A 9 OP2 100.0 REMARK 620 3 A A 10 N7 96.0 96.1 REMARK 620 4 HOH A 215 O 94.5 164.2 88.5 REMARK 620 5 HOH A 221 O 170.6 81.8 74.6 84.9 REMARK 620 6 HOH A 248 O 83.0 94.5 169.3 81.0 106.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 126 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 8 OP1 REMARK 620 2 NAD A 129 O1N 95.3 REMARK 620 3 NAD A 129 O2A 81.6 75.5 REMARK 620 4 HOH A 213 O 97.3 104.0 178.7 REMARK 620 5 HOH A 217 O 174.8 79.5 97.3 83.8 REMARK 620 6 HOH A 230 O 81.9 168.5 93.1 87.4 103.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 11 O2' REMARK 620 2 C A 12 OP2 95.7 REMARK 620 3 G A 36 OP2 45.1 94.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 123 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 11 OP2 REMARK 620 2 U A 17 OP1 32.8 REMARK 620 3 HOH A 202 O 89.1 66.3 REMARK 620 4 HOH A 227 O 76.5 44.2 53.6 REMARK 620 5 HOH A 253 O 86.2 78.9 119.4 66.7 REMARK 620 6 HOH A 254 O 85.2 95.8 64.3 114.8 170.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 124 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 11 OP1 REMARK 620 2 A A 11 OP1 0.0 REMARK 620 3 HOH A 229 O 79.4 79.4 REMARK 620 4 HOH A 229 O 99.7 99.7 171.5 REMARK 620 5 HOH A 252 O 84.3 84.3 85.8 85.8 REMARK 620 6 HOH A 252 O 84.3 84.3 85.8 85.8 0.0 REMARK 620 7 HOH A 260 O 81.7 81.7 106.6 81.5 159.2 159.2 REMARK 620 8 HOH A 260 O 109.2 109.2 81.5 106.6 159.2 159.2 41.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 116 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 23 N7 REMARK 620 2 HOH A 223 O 86.6 REMARK 620 3 HOH A 236 O 103.7 151.9 REMARK 620 4 HOH A 263 O 106.3 86.0 66.1 REMARK 620 5 HOH A 279 O 165.7 83.2 81.3 63.1 REMARK 620 6 HOH A 282 O 129.4 89.0 103.3 123.6 60.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 114 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 25 OP2 REMARK 620 2 HOH A 237 O 84.2 REMARK 620 3 HOH A 242 O 165.9 91.2 REMARK 620 4 HOH A 245 O 85.4 100.7 82.4 REMARK 620 5 HOH A 258 O 88.7 170.9 94.5 73.0 REMARK 620 6 HOH A 259 O 87.3 93.7 106.3 163.1 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 113 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 32 N7 REMARK 620 2 HOH A 206 O 79.3 REMARK 620 3 HOH A 210 O 88.8 166.3 REMARK 620 4 HOH A 232 O 70.4 94.9 74.6 REMARK 620 5 HOH A 266 O 136.2 130.2 63.4 125.9 REMARK 620 6 HOH A 277 O 127.0 77.3 105.1 65.1 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 120 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 36 N7 REMARK 620 2 HOH A 224 O 67.9 REMARK 620 3 HOH A 239 O 83.4 84.5 REMARK 620 4 HOH A 249 O 83.5 151.3 91.1 REMARK 620 5 HOH A 269 O 90.3 95.1 173.3 86.0 REMARK 620 6 HOH A 278 O 163.9 102.7 82.7 104.8 103.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 119 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 47 O6 REMARK 620 2 HOH A 207 O 57.2 REMARK 620 3 HOH A 208 O 55.8 75.5 REMARK 620 4 HOH A 209 O 69.0 121.1 54.4 REMARK 620 5 HOH A 264 O 133.1 95.1 160.1 141.8 REMARK 620 6 HOH A 271 O 102.6 83.3 50.9 86.8 111.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 228 O REMARK 620 2 HOH A 247 O 58.0 REMARK 620 3 HOH A 256 O 77.7 56.1 REMARK 620 4 HOH A 284 O 55.4 73.6 124.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 244 O REMARK 620 2 HOH A 272 O 106.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 110 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 282 O REMARK 620 2 HOH A 285 O 172.1 REMARK 620 3 HOH A 288 O 91.2 96.7 REMARK 620 4 HOH A 289 O 90.1 94.0 58.2 REMARK 620 5 HOH A 290 O 99.9 78.8 99.7 156.2 REMARK 620 6 HOH A 292 O 84.2 89.0 148.9 91.0 111.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 112 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 211 O REMARK 620 2 HOH A 212 O 79.0 REMARK 620 3 HOH A 265 O 87.3 156.1 REMARK 620 4 HOH A 275 O 62.2 100.9 89.7 REMARK 620 5 HOH A 276 O 65.8 82.1 74.4 126.1 REMARK 620 6 HOH A 291 O 163.4 117.5 76.5 113.2 112.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 115 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 220 O REMARK 620 2 HOH A 234 O 92.3 REMARK 620 3 HOH A 251 O 140.1 80.0 REMARK 620 4 HOH A 280 O 66.3 154.0 125.8 REMARK 620 5 HOH A 287 O 77.5 79.4 62.5 108.2 REMARK 620 6 HOH A 289 O 84.4 132.9 73.5 62.4 53.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 117 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 219 O REMARK 620 2 HOH A 226 O 151.4 REMARK 620 3 HOH A 250 O 67.9 84.2 REMARK 620 4 HOH A 281 O 80.4 75.4 46.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 121 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 216 O REMARK 620 2 HOH A 218 O 84.1 REMARK 620 3 HOH A 222 O 87.5 89.5 REMARK 620 4 HOH A 270 O 72.8 83.3 159.6 REMARK 620 5 HOH A 273 O 93.8 172.4 83.1 103.0 REMARK 620 6 HOH A 283 O 170.3 86.2 93.2 105.2 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 127 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 205 O REMARK 620 2 HOH A 238 O 129.1 REMARK 620 3 HOH A 246 O 64.9 64.6 REMARK 620 4 HOH A 261 O 100.5 67.6 83.1 REMARK 620 5 HOH A 286 O 81.9 83.3 65.7 144.5 REMARK 620 N 1 2 3 4 DBREF 7D7Z A 2 52 PDB 7D7Z 7D7Z 2 52 SEQRES 1 A 51 G C U U C A A C A A C C C SEQRES 2 A 51 C G U A G G U G G G G A C SEQRES 3 A 51 G A A A G U C A G C G C A SEQRES 4 A 51 C C U A C U G G A G C C HET GTP A 101 32 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET MG A 106 1 HET MG A 107 1 HET MG A 108 1 HET MG A 109 1 HET MG A 110 1 HET MG A 111 1 HET MG A 112 1 HET MN A 113 1 HET MN A 114 1 HET MN A 115 1 HET MN A 116 1 HET MN A 117 1 HET MN A 118 1 HET MN A 119 1 HET MN A 120 1 HET MN A 121 1 HET MN A 122 1 HET MN A 123 1 HET MN A 124 1 HET MN A 125 1 HET MN A 126 1 HET MN A 127 1 HET MN A 128 1 HET NAD A 129 44 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 MG 11(MG 2+) FORMUL 14 MN 16(MN 2+) FORMUL 30 NAD C21 H27 N7 O14 P2 FORMUL 31 HOH *92(H2 O) LINK OP2 G A 2 MG MG A 111 1555 1555 2.40 LINK OP2 A A 7 MN MN A 118 1555 1555 2.17 LINK OP2 A A 8 MN MN A 125 1555 1555 2.06 LINK OP1 A A 8 MN MN A 126 1555 1555 2.14 LINK OP2 C A 9 MN MN A 125 1555 1555 2.04 LINK N7 A A 10 MN MN A 125 1555 1555 2.24 LINK O2' A A 11 MG MG A 106 1555 2455 2.80 LINK OP2 A A 11 MN MN A 123 1555 1555 2.07 LINK OP1 A A 11 MN MN A 124 1555 1555 2.42 LINK OP1 A A 11 MN MN A 124 1555 2455 2.42 LINK OP2 C A 12 MG MG A 106 1555 2455 2.45 LINK OP1 U A 17 MN MN A 123 1555 2455 2.07 LINK N7 G A 23 MN MN A 116 1555 1555 2.25 LINK OP2 G A 25 MN MN A 114 1555 1555 2.18 LINK N7 G A 32 MN MN A 113 1555 1555 2.32 LINK OP2 G A 36 MG MG A 106 1555 1555 2.29 LINK N7 G A 36 MN MN A 120 1555 1555 2.43 LINK OP2 A A 40 MN MN A 128 1555 1555 2.21 LINK O6 G A 47 MN MN A 119 1555 1555 2.60 LINK O1B GTP A 101 MG MG A 111 1555 1555 2.54 LINK O3A GTP A 101 MG MG A 111 1555 1555 2.68 LINK MG MG A 102 O HOH A 228 1555 1555 2.38 LINK MG MG A 102 O HOH A 247 1555 1555 2.19 LINK MG MG A 102 O HOH A 256 1555 1555 1.91 LINK MG MG A 102 O HOH A 284 1555 1555 1.79 LINK MG MG A 103 O HOH A 240 1555 1555 2.56 LINK MG MG A 104 O HOH A 244 1555 1555 2.69 LINK MG MG A 104 O HOH A 272 1555 1555 2.35 LINK MG MG A 105 O HOH A 214 1555 1555 2.33 LINK MG MG A 109 O HOH A 268 1555 2455 2.40 LINK MG MG A 110 O HOH A 282 1555 1555 2.41 LINK MG MG A 110 O HOH A 285 1555 1555 2.46 LINK MG MG A 110 O HOH A 288 1555 1555 2.08 LINK MG MG A 110 O HOH A 289 1555 1555 2.45 LINK MG MG A 110 O HOH A 290 1555 1555 2.21 LINK MG MG A 110 O HOH A 292 1555 1555 2.17 LINK MG MG A 112 O HOH A 211 1555 1555 2.18 LINK MG MG A 112 O HOH A 212 1555 1555 2.36 LINK MG MG A 112 O HOH A 265 1555 8544 2.30 LINK MG MG A 112 O HOH A 275 1555 8544 2.78 LINK MG MG A 112 O HOH A 276 1555 8544 2.52 LINK MG MG A 112 O HOH A 291 1555 1555 2.50 LINK MN MN A 113 O HOH A 206 1555 1555 2.12 LINK MN MN A 113 O HOH A 210 1555 1555 2.53 LINK MN MN A 113 O HOH A 232 1555 1555 2.36 LINK MN MN A 113 O HOH A 266 1555 1555 2.68 LINK MN MN A 113 O HOH A 277 1555 1555 2.03 LINK MN MN A 114 O HOH A 237 1555 1555 1.95 LINK MN MN A 114 O HOH A 242 1555 1555 2.28 LINK MN MN A 114 O HOH A 245 1555 1555 2.39 LINK MN MN A 114 O HOH A 258 1555 1555 2.25 LINK MN MN A 114 O HOH A 259 1555 1555 2.41 LINK MN MN A 115 O HOH A 220 1555 1555 2.37 LINK MN MN A 115 O HOH A 234 1555 1555 2.47 LINK MN MN A 115 O HOH A 251 1555 1555 2.51 LINK MN MN A 115 O HOH A 280 1555 1555 2.70 LINK MN MN A 115 O HOH A 287 1555 1555 2.42 LINK MN MN A 115 O HOH A 289 1555 1555 2.56 LINK MN MN A 116 O HOH A 223 1555 1555 2.12 LINK MN MN A 116 O HOH A 236 1555 1555 2.51 LINK MN MN A 116 O HOH A 263 1555 1555 2.16 LINK MN MN A 116 O HOH A 279 1555 1555 2.04 LINK MN MN A 116 O HOH A 282 1555 1555 2.63 LINK MN MN A 117 O HOH A 219 1555 1555 2.43 LINK MN MN A 117 O HOH A 226 1555 1555 2.43 LINK MN MN A 117 O HOH A 250 1555 1555 1.96 LINK MN MN A 117 O HOH A 281 1555 1555 2.62 LINK MN MN A 118 O HOH A 204 1555 1555 2.53 LINK MN MN A 118 O HOH A 231 1555 1555 2.37 LINK MN MN A 118 O HOH A 243 1555 1555 2.34 LINK MN MN A 118 O HOH A 255 1555 1555 2.25 LINK MN MN A 118 O HOH A 274 1555 1555 2.50 LINK MN MN A 119 O HOH A 207 1555 1555 2.36 LINK MN MN A 119 O HOH A 208 1555 1555 2.61 LINK MN MN A 119 O HOH A 209 1555 1555 2.47 LINK MN MN A 119 O HOH A 264 1555 1555 2.56 LINK MN MN A 119 O HOH A 271 1555 1555 2.03 LINK MN MN A 120 O HOH A 224 1555 1555 2.23 LINK MN MN A 120 O HOH A 239 1555 1555 2.21 LINK MN MN A 120 O HOH A 249 1555 2455 2.32 LINK MN MN A 120 O HOH A 269 1555 1555 2.44 LINK MN MN A 120 O HOH A 278 1555 1555 2.60 LINK MN MN A 121 O HOH A 216 1555 1555 2.50 LINK MN MN A 121 O HOH A 218 1555 8444 2.42 LINK MN MN A 121 O HOH A 222 1555 1555 2.40 LINK MN MN A 121 O HOH A 270 1555 1555 2.43 LINK MN MN A 121 O HOH A 273 1555 1555 2.40 LINK MN MN A 121 O HOH A 283 1555 8444 2.05 LINK MN MN A 122 N7A NAD A 129 1555 1555 2.41 LINK MN MN A 123 O HOH A 202 1555 2455 1.76 LINK MN MN A 123 O HOH A 227 1555 1555 2.17 LINK MN MN A 123 O HOH A 253 1555 1555 2.51 LINK MN MN A 123 O HOH A 254 1555 1555 2.44 LINK MN MN A 124 O HOH A 229 1555 1555 2.74 LINK MN MN A 124 O HOH A 229 1555 2455 2.74 LINK MN MN A 124 O HOH A 252 1555 1555 2.17 LINK MN MN A 124 O HOH A 252 1555 2455 2.17 LINK MN MN A 124 O HOH A 260 1555 1555 2.49 LINK MN MN A 124 O HOH A 260 1555 2455 2.49 LINK MN MN A 125 O HOH A 215 1555 1555 2.34 LINK MN MN A 125 O HOH A 221 1555 1555 1.99 LINK MN MN A 125 O HOH A 248 1555 1555 2.36 LINK MN MN A 126 O1N NAD A 129 1555 1555 1.94 LINK MN MN A 126 O2A NAD A 129 1555 1555 2.26 LINK MN MN A 126 O HOH A 213 1555 1555 2.25 LINK MN MN A 126 O HOH A 217 1555 1555 2.04 LINK MN MN A 126 O HOH A 230 1555 1555 2.17 LINK MN MN A 127 O HOH A 205 1555 1555 2.31 LINK MN MN A 127 O HOH A 238 1555 2455 2.20 LINK MN MN A 127 O HOH A 246 1555 1555 2.33 LINK MN MN A 127 O HOH A 261 1555 2455 2.57 LINK MN MN A 127 O HOH A 286 1555 1555 2.44 CRYST1 55.804 57.318 196.564 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005087 0.00000