HEADER GENE REGULATION 07-OCT-20 7D87 TITLE CRYSTAL STRUCTURE OF ZEBRAFISH PHF14-PZP IN COMPLEX WITH H3(1-25) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 14; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHF14-PZP; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GENE FOR HISTONE H3 (GERMLINE GENE); COMPND 8 CHAIN: E; COMPND 9 FRAGMENT: HISTONE H3(1-25); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: PHF14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMOH10; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS PHF14-PZP, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,S.ZHENG REVDAT 3 29-NOV-23 7D87 1 REMARK REVDAT 2 09-FEB-22 7D87 1 AUTHOR JRNL REVDAT 1 28-JUL-21 7D87 0 JRNL AUTH S.ZHENG,Y.BI,H.CHEN,B.GONG,S.JIA,H.LI JRNL TITL MOLECULAR BASIS FOR BIPARTITE RECOGNITION OF HISTONE H3 BY JRNL TITL 2 THE PZP DOMAIN OF PHF14. JRNL REF NUCLEIC ACIDS RES. V. 49 8961 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34365506 JRNL DOI 10.1093/NAR/GKAB670 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2100 - 3.6100 1.00 3064 156 0.1459 0.1781 REMARK 3 2 3.6000 - 2.8600 1.00 2935 151 0.1698 0.2058 REMARK 3 3 2.8600 - 2.5000 1.00 2882 167 0.1873 0.2410 REMARK 3 4 2.5000 - 2.2700 1.00 2894 145 0.1918 0.2597 REMARK 3 5 2.2700 - 2.1100 0.98 2800 146 0.2036 0.2267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7702 14.4201 1.6444 REMARK 3 T TENSOR REMARK 3 T11: 0.4894 T22: 0.2374 REMARK 3 T33: 0.4425 T12: -0.0400 REMARK 3 T13: -0.0238 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 2.1688 L22: 4.3283 REMARK 3 L33: 1.5271 L12: -0.2938 REMARK 3 L13: 0.2320 L23: -0.6143 REMARK 3 S TENSOR REMARK 3 S11: 0.1083 S12: -0.0902 S13: -0.6492 REMARK 3 S21: 0.5834 S22: -0.0089 S23: -0.0162 REMARK 3 S31: 0.5843 S32: -0.0096 S33: -0.0560 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 388 THROUGH 485 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5088 30.1517 -4.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.2397 REMARK 3 T33: 0.1926 T12: 0.0050 REMARK 3 T13: 0.0132 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 4.1528 L22: 1.9986 REMARK 3 L33: 1.8907 L12: 0.2445 REMARK 3 L13: 0.5581 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.2823 S13: -0.3531 REMARK 3 S21: -0.0086 S22: -0.0206 S23: -0.1188 REMARK 3 S31: 0.1081 S32: -0.0203 S33: -0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7539 5.3364 14.8804 REMARK 3 T TENSOR REMARK 3 T11: 1.2135 T22: 0.6329 REMARK 3 T33: 0.6670 T12: -0.0994 REMARK 3 T13: -0.0716 T23: 0.1096 REMARK 3 L TENSOR REMARK 3 L11: 1.1797 L22: 0.9591 REMARK 3 L33: 1.0204 L12: 0.1999 REMARK 3 L13: 0.4421 L23: 0.9402 REMARK 3 S TENSOR REMARK 3 S11: -0.1970 S12: -0.6797 S13: 0.2971 REMARK 3 S21: 1.2355 S22: -0.0682 S23: -0.2290 REMARK 3 S31: -0.3458 S32: -0.6286 S33: 0.0872 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.88900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7D86 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CARBOXYLIC ACIDS,0.1 M BUFFER REMARK 280 SYSTEM 2, 37.50% % V/V MPD_P1K_P3350 (MORPHEUS)., PH 7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.92000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.92000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.96050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.50950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.96050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.50950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.92000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.96050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.50950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.92000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.96050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.50950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 277 REMARK 465 SER A 278 REMARK 465 SER A 279 REMARK 465 GLN A 280 REMARK 465 ARG A 281 REMARK 465 MET A 282 REMARK 465 GLU A 283 REMARK 465 VAL A 486 REMARK 465 SER A 487 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 430 54.51 -107.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 288 SG REMARK 620 2 CYS A 291 SG 114.4 REMARK 620 3 HIS A 313 ND1 103.2 97.8 REMARK 620 4 CYS A 316 SG 114.2 117.1 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 305 SG REMARK 620 2 CYS A 308 SG 104.5 REMARK 620 3 CYS A 340 SG 112.3 118.4 REMARK 620 4 CYS A 343 SG 108.6 108.7 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 351 SG REMARK 620 2 CYS A 354 SG 118.9 REMARK 620 3 HIS A 371 ND1 97.5 95.2 REMARK 620 4 CYS A 374 SG 117.2 109.0 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 375 O REMARK 620 2 LEU A 376 O 76.0 REMARK 620 3 VAL A 378 O 95.7 103.3 REMARK 620 4 VAL A 381 O 91.2 153.7 100.8 REMARK 620 5 HOH A 680 O 91.7 67.9 166.8 90.0 REMARK 620 6 HOH A 681 O 163.8 88.0 85.2 104.6 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 407 SG REMARK 620 2 CYS A 410 SG 113.0 REMARK 620 3 HIS A 434 ND1 96.0 97.5 REMARK 620 4 CYS A 437 SG 115.2 115.0 117.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 424 SG REMARK 620 2 CYS A 429 SG 107.5 REMARK 620 3 CYS A 461 SG 116.2 112.8 REMARK 620 4 HIS A 464 ND1 110.3 106.6 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 455 OD2 REMARK 620 2 PHE A 457 O 90.0 REMARK 620 3 HOH A 625 O 76.7 96.9 REMARK 620 4 HOH A 636 O 91.8 173.0 77.0 REMARK 620 5 HOH A 645 O 169.7 100.3 101.9 78.0 REMARK 620 6 HOH A 652 O 91.6 91.7 165.5 95.0 88.0 REMARK 620 N 1 2 3 4 5 DBREF1 7D87 A 278 487 UNP A0A286Y9D1_DANRE DBREF2 7D87 A A0A286Y9D1 278 487 DBREF 7D87 E 1 25 UNP V9H1G0 V9H1G0_HUMAN 2 26 SEQADV 7D87 SER A 277 UNP A0A286Y9D EXPRESSION TAG SEQRES 1 A 211 SER SER SER GLN ARG MET GLU HIS ILE LEU ILE CYS CYS SEQRES 2 A 211 VAL CYS LEU GLY ASP ASN SER GLU ASP ALA ASP GLU ILE SEQRES 3 A 211 ILE GLN CYS ASP ASN CYS GLY VAL THR VAL HIS GLU GLY SEQRES 4 A 211 CYS TYR GLY VAL ASP GLY GLU SER ASP SER ILE MET SER SEQRES 5 A 211 SER ALA SER GLU ASN SER THR GLU PRO TRP PHE CYS ASP SEQRES 6 A 211 ALA CYS LYS ASN GLY VAL SER PRO SER CYS GLU LEU CYS SEQRES 7 A 211 PRO SER GLN ASP GLY ILE PHE LYS GLU THR ASP ALA GLY SEQRES 8 A 211 ARG TRP VAL HIS VAL VAL CYS ALA LEU TYR VAL PRO GLY SEQRES 9 A 211 VAL ALA PHE GLY ASP ILE ASP LYS LEU ARG PRO VAL THR SEQRES 10 A 211 LEU THR GLU MET ASN TYR SER LYS TYR GLY ALA LYS GLU SEQRES 11 A 211 CYS SER LEU CYS GLU ASP THR ARG PHE ALA ARG THR GLY SEQRES 12 A 211 VAL CYS ILE SER CYS ASP ALA GLY MET CYS ARG SER PHE SEQRES 13 A 211 PHE HIS VAL THR CYS ALA GLN ARG GLU GLY LEU LEU SER SEQRES 14 A 211 GLU ALA ALA ALA GLU GLU ASP ILE ALA ASP PRO PHE PHE SEQRES 15 A 211 ALA TYR CYS LYS GLN HIS ALA ASP ARG PHE ASP ARG LYS SEQRES 16 A 211 TRP LYS ARG LYS ASN TYR LEU ALA LEU GLN SER TYR CYS SEQRES 17 A 211 LYS VAL SER SEQRES 1 E 25 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 E 25 LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET CA A 506 1 HET CA A 507 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN 5(ZN 2+) FORMUL 8 CA 2(CA 2+) FORMUL 10 HOH *87(H2 O) HELIX 1 AA1 ILE A 326 SER A 331 5 6 HELIX 2 AA2 CYS A 340 ASN A 345 1 6 HELIX 3 AA3 VAL A 372 VAL A 378 1 7 HELIX 4 AA4 THR A 395 LYS A 401 1 7 HELIX 5 AA5 ASP A 412 ALA A 416 5 5 HELIX 6 AA6 HIS A 434 GLU A 441 1 8 HELIX 7 AA7 ALA A 448 ASP A 452 5 5 HELIX 8 AA8 ASP A 466 LYS A 485 1 20 HELIX 9 AA9 GLN E 5 ARG E 8 5 4 SHEET 1 AA1 2 ILE A 302 GLN A 304 0 SHEET 2 AA1 2 THR A 311 HIS A 313 -1 O VAL A 312 N ILE A 303 SHEET 1 AA2 2 THR A 335 GLU A 336 0 SHEET 2 AA2 2 ARG E 2 THR E 3 -1 O ARG E 2 N GLU A 336 SHEET 1 AA3 2 PHE A 361 GLU A 363 0 SHEET 2 AA3 2 TRP A 369 HIS A 371 -1 O VAL A 370 N LYS A 362 SHEET 1 AA4 2 ALA A 382 PHE A 383 0 SHEET 2 AA4 2 VAL A 392 THR A 393 -1 O THR A 393 N ALA A 382 SHEET 1 AA5 2 ILE A 422 SER A 423 0 SHEET 2 AA5 2 PHE A 432 PHE A 433 -1 O PHE A 433 N ILE A 422 SHEET 1 AA6 2 LEU A 444 GLU A 446 0 SHEET 2 AA6 2 PHE A 457 ALA A 459 -1 O PHE A 458 N SER A 445 LINK SG CYS A 288 ZN ZN A 504 1555 1555 2.31 LINK SG CYS A 291 ZN ZN A 504 1555 1555 2.28 LINK SG CYS A 305 ZN ZN A 505 1555 1555 2.29 LINK SG CYS A 308 ZN ZN A 505 1555 1555 2.22 LINK ND1 HIS A 313 ZN ZN A 504 1555 1555 2.11 LINK SG CYS A 316 ZN ZN A 504 1555 1555 2.24 LINK SG CYS A 340 ZN ZN A 505 1555 1555 2.38 LINK SG CYS A 343 ZN ZN A 505 1555 1555 2.38 LINK SG CYS A 351 ZN ZN A 502 1555 1555 2.38 LINK SG CYS A 354 ZN ZN A 502 1555 1555 2.29 LINK ND1 HIS A 371 ZN ZN A 502 1555 1555 2.04 LINK SG CYS A 374 ZN ZN A 502 1555 1555 2.37 LINK O ALA A 375 CA CA A 507 1555 1555 2.50 LINK O LEU A 376 CA CA A 507 1555 1555 3.02 LINK O VAL A 378 CA CA A 507 1555 1555 2.72 LINK O VAL A 381 CA CA A 507 1555 1555 2.42 LINK SG CYS A 407 ZN ZN A 503 1555 1555 2.27 LINK SG CYS A 410 ZN ZN A 503 1555 1555 2.30 LINK SG CYS A 424 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 429 ZN ZN A 501 1555 1555 2.34 LINK ND1 HIS A 434 ZN ZN A 503 1555 1555 2.13 LINK SG CYS A 437 ZN ZN A 503 1555 1555 2.33 LINK OD2 ASP A 455 CA CA A 506 1555 1555 2.58 LINK O PHE A 457 CA CA A 506 1555 1555 2.40 LINK SG CYS A 461 ZN ZN A 501 1555 1555 2.29 LINK ND1 HIS A 464 ZN ZN A 501 1555 1555 2.12 LINK CA CA A 506 O HOH A 625 1555 1555 2.62 LINK CA CA A 506 O HOH A 636 1555 1555 2.61 LINK CA CA A 506 O HOH A 645 1555 1555 2.53 LINK CA CA A 506 O HOH A 652 1555 1555 2.41 LINK CA CA A 507 O HOH A 680 1555 1555 2.92 LINK CA CA A 507 O HOH A 681 1555 1555 2.38 CISPEP 1 ARG A 390 PRO A 391 0 -9.49 CRYST1 41.921 151.019 81.840 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012219 0.00000