HEADER GENE REGULATION 07-OCT-20 7D8A TITLE CRYSTAL STRUCTURE OF H3(1-13)/PHF14-PZP FUSION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 14; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHF14-PZP; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GENE FOR HISTONE H3 (GERMLINE GENE); COMPND 8 CHAIN: E; COMPND 9 FRAGMENT: H3(1-13); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: PHF14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMOH10; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS H3(1-13)/PHF14-PZP, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,S.ZHENG REVDAT 3 29-NOV-23 7D8A 1 REMARK REVDAT 2 09-FEB-22 7D8A 1 AUTHOR JRNL REVDAT 1 28-JUL-21 7D8A 0 JRNL AUTH S.ZHENG,Y.BI,H.CHEN,B.GONG,S.JIA,H.LI JRNL TITL MOLECULAR BASIS FOR BIPARTITE RECOGNITION OF HISTONE H3 BY JRNL TITL 2 THE PZP DOMAIN OF PHF14. JRNL REF NUCLEIC ACIDS RES. V. 49 8961 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34365506 JRNL DOI 10.1093/NAR/GKAB670 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.530 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 31404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7100 - 5.6800 0.99 1343 116 0.1834 0.2103 REMARK 3 2 5.6800 - 4.5100 1.00 1277 166 0.1642 0.1856 REMARK 3 3 4.5100 - 3.9400 1.00 1314 163 0.1474 0.1558 REMARK 3 4 3.9400 - 3.5800 0.99 1278 144 0.1476 0.1824 REMARK 3 5 3.5800 - 3.3300 0.99 1304 160 0.1683 0.2113 REMARK 3 6 3.3200 - 3.1300 1.00 1290 143 0.1688 0.1823 REMARK 3 7 3.1300 - 2.9700 1.00 1286 161 0.1804 0.2392 REMARK 3 8 2.9700 - 2.8400 1.00 1321 156 0.1804 0.2328 REMARK 3 9 2.8400 - 2.7300 1.00 1320 143 0.1993 0.2472 REMARK 3 10 2.7300 - 2.6400 1.00 1309 139 0.1909 0.2672 REMARK 3 11 2.6400 - 2.5600 1.00 1303 158 0.1859 0.2031 REMARK 3 12 2.5600 - 2.4800 0.99 1306 148 0.1886 0.2272 REMARK 3 13 2.4800 - 2.4200 0.99 1306 124 0.1873 0.2228 REMARK 3 14 2.4200 - 2.3600 1.00 1309 143 0.1957 0.2519 REMARK 3 15 2.3600 - 2.3100 1.00 1323 132 0.1962 0.2621 REMARK 3 16 2.3100 - 2.2600 1.00 1295 165 0.1992 0.2468 REMARK 3 17 2.2600 - 2.2100 1.00 1276 159 0.1865 0.2461 REMARK 3 18 2.2100 - 2.1700 0.99 1318 141 0.1964 0.2548 REMARK 3 19 2.1700 - 2.1300 1.00 1314 139 0.2015 0.2690 REMARK 3 20 2.1300 - 2.1000 1.00 1237 132 0.2131 0.2896 REMARK 3 21 2.0500 - 2.0300 0.98 901 123 0.2527 0.2633 REMARK 3 22 2.0300 - 2.0000 1.00 1304 115 0.2432 0.2809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6804 -13.2589 -1.5069 REMARK 3 T TENSOR REMARK 3 T11: 0.4201 T22: 0.1295 REMARK 3 T33: 0.4084 T12: 0.0345 REMARK 3 T13: 0.0363 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 2.0215 L22: 3.1011 REMARK 3 L33: 1.2222 L12: 0.5048 REMARK 3 L13: 0.0462 L23: -0.4593 REMARK 3 S TENSOR REMARK 3 S11: 0.1033 S12: 0.0198 S13: 0.7745 REMARK 3 S21: -0.5152 S22: -0.0659 S23: 0.0151 REMARK 3 S31: -0.6155 S32: 0.0210 S33: 0.0126 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 485 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3597 -29.7863 4.2351 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.2030 REMARK 3 T33: 0.1854 T12: 0.0097 REMARK 3 T13: -0.0145 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.6564 L22: 1.9150 REMARK 3 L33: 2.2246 L12: 0.0254 REMARK 3 L13: -0.7509 L23: 0.4872 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: -0.2128 S13: 0.3841 REMARK 3 S21: -0.0731 S22: -0.0602 S23: -0.0640 REMARK 3 S31: -0.1935 S32: 0.0251 S33: 0.0435 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0002 -5.1386 -14.7961 REMARK 3 T TENSOR REMARK 3 T11: 1.1024 T22: 0.4566 REMARK 3 T33: 0.4540 T12: 0.1630 REMARK 3 T13: 0.0551 T23: 0.1838 REMARK 3 L TENSOR REMARK 3 L11: 2.4753 L22: 2.2098 REMARK 3 L33: 3.4983 L12: 0.7731 REMARK 3 L13: 0.2395 L23: 0.8978 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.7381 S13: 0.1272 REMARK 3 S21: -1.2892 S22: -0.2216 S23: -0.2228 REMARK 3 S31: 0.3909 S32: -0.3346 S33: 0.0514 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2818 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12500 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.91400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7D86 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 18% PEG4000, 12% REMARK 280 ISOPROPANOL ., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.89050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.21150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.89050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.21150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.71000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.89050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.21150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.71000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.89050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.21150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 623 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 278 REMARK 465 SER A 279 REMARK 465 GLN A 280 REMARK 465 ARG A 281 REMARK 465 MET A 282 REMARK 465 GLU A 283 REMARK 465 HIS A 284 REMARK 465 VAL A 486 REMARK 465 SER A 487 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 SER E 14 REMARK 465 GLY E 15 REMARK 465 SER E 16 REMARK 465 GLY E 17 REMARK 465 SER E 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 430 66.89 -112.75 REMARK 500 CYS A 484 -71.38 -69.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 288 SG REMARK 620 2 CYS A 291 SG 113.1 REMARK 620 3 HIS A 313 ND1 104.6 95.6 REMARK 620 4 CYS A 316 SG 114.3 115.8 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 305 SG REMARK 620 2 CYS A 308 SG 102.9 REMARK 620 3 CYS A 340 SG 118.5 118.4 REMARK 620 4 CYS A 343 SG 104.2 109.8 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 351 SG REMARK 620 2 CYS A 354 SG 117.9 REMARK 620 3 HIS A 371 ND1 99.2 95.4 REMARK 620 4 CYS A 374 SG 117.4 107.5 117.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 375 O REMARK 620 2 LEU A 376 O 79.0 REMARK 620 3 VAL A 378 O 95.8 104.2 REMARK 620 4 VAL A 381 O 89.2 152.2 102.0 REMARK 620 5 HOH A 621 O 100.9 51.3 145.8 107.8 REMARK 620 6 HOH A 704 O 167.2 88.2 88.6 101.6 69.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 407 SG REMARK 620 2 CYS A 410 SG 113.0 REMARK 620 3 HIS A 434 ND1 97.0 97.4 REMARK 620 4 CYS A 437 SG 115.5 114.8 116.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 424 SG REMARK 620 2 CYS A 429 SG 111.1 REMARK 620 3 CYS A 461 SG 115.2 112.4 REMARK 620 4 HIS A 464 ND1 113.4 102.3 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 455 OD2 REMARK 620 2 PHE A 457 O 94.0 REMARK 620 3 HOH A 637 O 78.3 95.2 REMARK 620 4 HOH A 651 O 92.4 89.7 169.8 REMARK 620 5 HOH A 654 O 88.2 171.7 77.4 98.2 REMARK 620 6 HOH A 663 O 170.0 96.0 100.3 88.1 81.9 REMARK 620 N 1 2 3 4 5 DBREF1 7D8A A 278 487 UNP A0A286Y9D1_DANRE DBREF2 7D8A A A0A286Y9D1 278 487 DBREF 7D8A E 1 12 UNP V9H1G0 V9H1G0_HUMAN 2 13 SEQADV 7D8A GLY E 13 UNP V9H1G0 LINKER SEQADV 7D8A SER E 14 UNP V9H1G0 LINKER SEQADV 7D8A GLY E 15 UNP V9H1G0 LINKER SEQADV 7D8A SER E 16 UNP V9H1G0 LINKER SEQADV 7D8A GLY E 17 UNP V9H1G0 LINKER SEQADV 7D8A SER E 18 UNP V9H1G0 LINKER SEQRES 1 A 210 SER SER GLN ARG MET GLU HIS ILE LEU ILE CYS CYS VAL SEQRES 2 A 210 CYS LEU GLY ASP ASN SER GLU ASP ALA ASP GLU ILE ILE SEQRES 3 A 210 GLN CYS ASP ASN CYS GLY VAL THR VAL HIS GLU GLY CYS SEQRES 4 A 210 TYR GLY VAL ASP GLY GLU SER ASP SER ILE MET SER SER SEQRES 5 A 210 ALA SER GLU ASN SER THR GLU PRO TRP PHE CYS ASP ALA SEQRES 6 A 210 CYS LYS ASN GLY VAL SER PRO SER CYS GLU LEU CYS PRO SEQRES 7 A 210 SER GLN ASP GLY ILE PHE LYS GLU THR ASP ALA GLY ARG SEQRES 8 A 210 TRP VAL HIS VAL VAL CYS ALA LEU TYR VAL PRO GLY VAL SEQRES 9 A 210 ALA PHE GLY ASP ILE ASP LYS LEU ARG PRO VAL THR LEU SEQRES 10 A 210 THR GLU MET ASN TYR SER LYS TYR GLY ALA LYS GLU CYS SEQRES 11 A 210 SER LEU CYS GLU ASP THR ARG PHE ALA ARG THR GLY VAL SEQRES 12 A 210 CYS ILE SER CYS ASP ALA GLY MET CYS ARG SER PHE PHE SEQRES 13 A 210 HIS VAL THR CYS ALA GLN ARG GLU GLY LEU LEU SER GLU SEQRES 14 A 210 ALA ALA ALA GLU GLU ASP ILE ALA ASP PRO PHE PHE ALA SEQRES 15 A 210 TYR CYS LYS GLN HIS ALA ASP ARG PHE ASP ARG LYS TRP SEQRES 16 A 210 LYS ARG LYS ASN TYR LEU ALA LEU GLN SER TYR CYS LYS SEQRES 17 A 210 VAL SER SEQRES 1 E 18 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 E 18 SER GLY SER GLY SER HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET CA A 506 1 HET CA A 507 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN 5(ZN 2+) FORMUL 8 CA 2(CA 2+) FORMUL 10 HOH *115(H2 O) HELIX 1 AA1 GLY A 315 TYR A 317 5 3 HELIX 2 AA2 CYS A 340 ASN A 345 1 6 HELIX 3 AA3 VAL A 372 VAL A 378 1 7 HELIX 4 AA4 THR A 395 LYS A 401 1 7 HELIX 5 AA5 ASP A 412 ALA A 416 5 5 HELIX 6 AA6 HIS A 434 GLU A 441 1 8 HELIX 7 AA7 ALA A 448 ASP A 452 5 5 HELIX 8 AA8 ASP A 466 LYS A 485 1 20 HELIX 9 AA9 GLN E 5 ARG E 8 5 4 SHEET 1 AA1 2 ILE A 302 GLN A 304 0 SHEET 2 AA1 2 THR A 311 HIS A 313 -1 O VAL A 312 N ILE A 303 SHEET 1 AA2 2 THR A 335 GLU A 336 0 SHEET 2 AA2 2 ARG E 2 THR E 3 -1 O ARG E 2 N GLU A 336 SHEET 1 AA3 2 PHE A 361 GLU A 363 0 SHEET 2 AA3 2 TRP A 369 HIS A 371 -1 O VAL A 370 N LYS A 362 SHEET 1 AA4 2 ILE A 422 SER A 423 0 SHEET 2 AA4 2 PHE A 432 PHE A 433 -1 O PHE A 433 N ILE A 422 SHEET 1 AA5 2 LEU A 444 GLU A 446 0 SHEET 2 AA5 2 PHE A 457 ALA A 459 -1 O PHE A 458 N SER A 445 LINK SG CYS A 288 ZN ZN A 504 1555 1555 2.35 LINK SG CYS A 291 ZN ZN A 504 1555 1555 2.38 LINK SG CYS A 305 ZN ZN A 505 1555 1555 2.37 LINK SG CYS A 308 ZN ZN A 505 1555 1555 2.22 LINK ND1 HIS A 313 ZN ZN A 504 1555 1555 2.27 LINK SG CYS A 316 ZN ZN A 504 1555 1555 2.19 LINK SG CYS A 340 ZN ZN A 505 1555 1555 2.33 LINK SG CYS A 343 ZN ZN A 505 1555 1555 2.46 LINK SG CYS A 351 ZN ZN A 502 1555 1555 2.42 LINK SG CYS A 354 ZN ZN A 502 1555 1555 2.26 LINK ND1 HIS A 371 ZN ZN A 502 1555 1555 2.09 LINK SG CYS A 374 ZN ZN A 502 1555 1555 2.31 LINK O ALA A 375 CA CA A 507 1555 1555 2.42 LINK O LEU A 376 CA CA A 507 1555 1555 2.86 LINK O VAL A 378 CA CA A 507 1555 1555 2.68 LINK O VAL A 381 CA CA A 507 1555 1555 2.44 LINK SG CYS A 407 ZN ZN A 503 1555 1555 2.21 LINK SG CYS A 410 ZN ZN A 503 1555 1555 2.36 LINK SG CYS A 424 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 429 ZN ZN A 501 1555 1555 2.37 LINK ND1 HIS A 434 ZN ZN A 503 1555 1555 2.16 LINK SG CYS A 437 ZN ZN A 503 1555 1555 2.25 LINK OD2 ASP A 455 CA CA A 506 1555 1555 2.50 LINK O PHE A 457 CA CA A 506 1555 1555 2.28 LINK SG CYS A 461 ZN ZN A 501 1555 1555 2.27 LINK ND1 HIS A 464 ZN ZN A 501 1555 1555 2.20 LINK CA CA A 506 O HOH A 637 1555 1555 2.53 LINK CA CA A 506 O HOH A 651 1555 1555 2.34 LINK CA CA A 506 O HOH A 654 1555 1555 2.61 LINK CA CA A 506 O HOH A 663 1555 1555 2.45 LINK CA CA A 507 O HOH A 621 1555 1555 3.17 LINK CA CA A 507 O HOH A 704 1555 8445 2.40 CISPEP 1 ARG A 390 PRO A 391 0 -11.77 CRYST1 41.781 150.423 81.420 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012282 0.00000