HEADER TRANSCRIPTION 09-OCT-20 7D8R TITLE MITF HLHLZ STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR,METHIONYL- COMPND 3 TRNA SYNTHETASE BETA SUBUNIT; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FUSION PROTEIN OF MICROPHTHALMIA-ASSOCIATED COMPND 7 TRANSCRIPTION FACTOR AND METHIONYL-TRNA SYNTHETASE BETA SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, AQUIFEX AEOLICUS VF5; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 224324; SOURCE 5 STRAIN: VF5; SOURCE 6 GENE: MITF, BHLHE32, METG', AQ_422; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.GUO,P.FANG,J.WANG REVDAT 3 27-SEP-23 7D8R 1 JRNL REVDAT 2 16-FEB-22 7D8R 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL HELIX SHEET ATOM REVDAT 1 13-OCT-21 7D8R 0 JRNL AUTH Z.LIU,K.CHEN,J.DAI,P.XU,W.SUN,W.LIU,Z.ZHAO,S.P.BENNETT,P.LI, JRNL AUTH 2 T.MA,Y.LIN,A.KAWAKAMI,J.YU,F.WANG,C.WANG,M.LI,P.CHASE, JRNL AUTH 3 P.HODDER,T.P.SPICER,L.SCAMPAVIA,C.CAO,L.PAN,J.DONG,Y.CHEN, JRNL AUTH 4 B.YU,M.GUO,P.FANG,D.E.FISHER,J.WANG JRNL TITL A UNIQUE HYPERDYNAMIC DIMER INTERFACE PERMITS SMALL MOLECULE JRNL TITL 2 PERTURBATION OF THE MELANOMA ONCOPROTEIN MITF FOR MELANOMA JRNL TITL 3 THERAPY. JRNL REF CELL RES. V. 33 55 2023 JRNL REFN ISSN 1001-0602 JRNL PMID 36588115 JRNL DOI 10.1038/S41422-022-00744-5 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 18484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.287 REMARK 3 R VALUE (WORKING SET) : 0.285 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6930 - 5.7337 0.98 2497 130 0.2293 0.2649 REMARK 3 2 5.7337 - 4.5533 0.99 2519 129 0.2587 0.2983 REMARK 3 3 4.5533 - 3.9784 0.98 2536 139 0.2849 0.3041 REMARK 3 4 3.9784 - 3.6149 0.98 2510 141 0.3486 0.3993 REMARK 3 5 3.6149 - 3.3560 0.98 2495 141 0.3698 0.4344 REMARK 3 6 3.3560 - 3.1582 0.98 2500 146 0.3918 0.4045 REMARK 3 7 3.1582 - 3.0001 0.98 2481 120 0.4415 0.4446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.630 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 44.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 101.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 117.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 6.3472 -1.5648 0.1995 REMARK 3 T TENSOR REMARK 3 T11: 0.4673 T22: 0.6515 REMARK 3 T33: 0.5208 T12: 0.0322 REMARK 3 T13: 0.0158 T23: -0.0609 REMARK 3 L TENSOR REMARK 3 L11: 0.1721 L22: 2.5592 REMARK 3 L33: -0.8018 L12: 0.0593 REMARK 3 L13: 0.1306 L23: -0.6172 REMARK 3 S TENSOR REMARK 3 S11: 0.4182 S12: 0.0009 S13: 0.0228 REMARK 3 S21: -0.0087 S22: -0.3756 S23: 0.1511 REMARK 3 S31: 0.0108 S32: -0.0930 S33: -0.0405 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18512 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 77.124 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : 0.58600 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, KCL, PO/OH, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 322 REMARK 465 LEU A 323 REMARK 465 ARG A 324 REMARK 465 PHE A 325 REMARK 465 PRO A 344 REMARK 465 ASP A 345 REMARK 465 MET A 346 REMARK 465 GLU A 503 REMARK 465 SER B 322 REMARK 465 LEU B 323 REMARK 465 ARG B 324 REMARK 465 PHE B 325 REMARK 465 LYS B 340 REMARK 465 SER B 341 REMARK 465 ASN B 342 REMARK 465 ASP B 343 REMARK 465 PRO B 344 REMARK 465 ASP B 345 REMARK 465 MET B 346 REMARK 465 ARG B 347 REMARK 465 TRP B 348 REMARK 465 GLU B 503 REMARK 465 SER C 322 REMARK 465 LEU C 323 REMARK 465 ARG C 324 REMARK 465 PHE C 325 REMARK 465 LYS C 340 REMARK 465 SER C 341 REMARK 465 ASN C 342 REMARK 465 ASP C 343 REMARK 465 PRO C 344 REMARK 465 ASP C 345 REMARK 465 MET C 346 REMARK 465 ARG C 347 REMARK 465 TRP C 348 REMARK 465 GLU C 503 REMARK 465 SER D 322 REMARK 465 LEU D 323 REMARK 465 ARG D 324 REMARK 465 PHE D 325 REMARK 465 ASP D 345 REMARK 465 MET D 346 REMARK 465 ARG D 347 REMARK 465 GLU D 503 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 329 CG OD1 OD2 REMARK 470 ARG A 330 NE CZ NH1 NH2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 TRP A 348 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 348 CZ3 CH2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 SER A 357 OG REMARK 470 ARG A 362 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 ARG A 366 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 372 CD CE NZ REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 ASN A 376 CG OD1 ND2 REMARK 470 ARG A 377 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 378 CG CD OE1 NE2 REMARK 470 LYS A 379 CG CD CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 LEU A 381 CG CD1 CD2 REMARK 470 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 LYS A 409 CD CE NZ REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 LEU A 422 CG CD1 CD2 REMARK 470 GLU A 432 CG CD OE1 OE2 REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 LYS A 461 CG CD CE NZ REMARK 470 ARG A 463 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 464 CD CE NZ REMARK 470 GLU A 469 CD OE1 OE2 REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 470 LYS A 497 CG CD CE NZ REMARK 470 ASN B 328 CG OD1 ND2 REMARK 470 ASP B 329 CG OD1 OD2 REMARK 470 LYS B 332 CG CD CE NZ REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 THR B 352 OG1 CG2 REMARK 470 LYS B 355 CG CD CE NZ REMARK 470 SER B 357 OG REMARK 470 ASP B 359 CG OD1 OD2 REMARK 470 LYS B 363 CG CD CE NZ REMARK 470 GLU B 367 CG CD OE1 OE2 REMARK 470 GLN B 369 CG CD OE1 NE2 REMARK 470 LYS B 372 CG CD CE NZ REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 LEU B 374 CG CD1 CD2 REMARK 470 GLU B 375 CG CD OE1 OE2 REMARK 470 ARG B 377 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 378 CG CD OE1 NE2 REMARK 470 LYS B 379 CG CD CE NZ REMARK 470 LYS B 380 CG CD CE NZ REMARK 470 ARG B 386 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 390 CG CD1 CD2 REMARK 470 ARG B 391 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 393 CG CD OE1 NE2 REMARK 470 GLU B 394 CG CD OE1 OE2 REMARK 470 LEU B 395 CG CD1 CD2 REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 470 LYS B 402 CG CD CE NZ REMARK 470 LYS B 421 CG CD CE NZ REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 GLU B 433 CG CD OE1 OE2 REMARK 470 ARG B 434 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 442 CG CD CE NZ REMARK 470 GLU B 447 CG CD OE1 OE2 REMARK 470 LYS B 461 CG CD CE NZ REMARK 470 ARG B 463 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 464 CG CD CE NZ REMARK 470 LYS B 493 CG CD CE NZ REMARK 470 LYS B 497 CG CD CE NZ REMARK 470 ASP C 329 CG OD1 OD2 REMARK 470 LYS C 332 CG CD CE NZ REMARK 470 LYS C 350 CG CD CE NZ REMARK 470 THR C 352 OG1 CG2 REMARK 470 ILE C 353 CG1 CG2 CD1 REMARK 470 LYS C 355 CG CD CE NZ REMARK 470 SER C 357 OG REMARK 470 ASP C 359 CG OD1 OD2 REMARK 470 ARG C 362 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 363 CG CD CE NZ REMARK 470 ARG C 366 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 367 CG CD OE1 OE2 REMARK 470 ARG C 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 372 CG CD CE NZ REMARK 470 GLU C 375 CG CD OE1 OE2 REMARK 470 ASN C 376 CG OD1 ND2 REMARK 470 ARG C 377 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 378 CG CD OE1 NE2 REMARK 470 LYS C 379 CG CD CE NZ REMARK 470 LYS C 380 CG CD CE NZ REMARK 470 ARG C 386 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 390 CG CD1 CD2 REMARK 470 ARG C 391 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 393 CG CD OE1 NE2 REMARK 470 ARG C 415 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 417 CG CD OE1 OE2 REMARK 470 GLU C 420 CG CD OE1 OE2 REMARK 470 LYS C 421 CG CD CE NZ REMARK 470 LYS C 424 NZ REMARK 470 GLU C 432 CG CD OE1 OE2 REMARK 470 GLU C 433 CG CD OE1 OE2 REMARK 470 LYS C 442 CG CD CE NZ REMARK 470 GLU C 447 CG CD OE1 OE2 REMARK 470 LYS C 452 CG CD CE NZ REMARK 470 LYS C 461 CG CD CE NZ REMARK 470 ARG C 463 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 464 CG CD CE NZ REMARK 470 GLU C 469 CG CD OE1 OE2 REMARK 470 SER C 470 OG REMARK 470 GLU C 481 CG CD OE1 OE2 REMARK 470 LYS C 493 CG CD CE NZ REMARK 470 LYS C 497 CG CD CE NZ REMARK 470 ASN D 326 CG OD1 ND2 REMARK 470 ILE D 327 CG1 CG2 CD1 REMARK 470 ASN D 328 CG OD1 ND2 REMARK 470 ASP D 329 CG OD1 OD2 REMARK 470 ARG D 330 NE CZ NH1 NH2 REMARK 470 LYS D 332 CG CD CE NZ REMARK 470 GLU D 333 CG CD OE1 OE2 REMARK 470 LYS D 340 CG CD CE NZ REMARK 470 TRP D 348 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 348 CZ3 CH2 REMARK 470 LYS D 350 CG CD CE NZ REMARK 470 LYS D 355 CG CD CE NZ REMARK 470 SER D 357 OG REMARK 470 ARG D 362 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 363 CG CD CE NZ REMARK 470 ARG D 366 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 367 CG CD OE1 OE2 REMARK 470 GLN D 369 CG CD OE1 NE2 REMARK 470 ARG D 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 372 CG CD CE NZ REMARK 470 GLU D 373 CG CD OE1 OE2 REMARK 470 ARG D 377 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 378 CG CD OE1 NE2 REMARK 470 LYS D 379 CG CD CE NZ REMARK 470 LYS D 380 CG CD CE NZ REMARK 470 ARG D 386 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 402 CG CD CE NZ REMARK 470 LYS D 409 CD CE NZ REMARK 470 GLU D 417 CG CD OE1 OE2 REMARK 470 GLU D 420 CG CD OE1 OE2 REMARK 470 LYS D 421 CG CD CE NZ REMARK 470 LYS D 424 CG CD CE NZ REMARK 470 LYS D 442 CG CD CE NZ REMARK 470 LYS D 461 CG CD CE NZ REMARK 470 ARG D 463 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 464 CG CD CE NZ REMARK 470 LYS D 493 CG CD CE NZ REMARK 470 LYS D 497 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 429 31.37 -97.75 REMARK 500 ASN D 342 0.19 -66.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 7D8R A 324 395 UNP O75030 MITF_HUMAN 324 395 DBREF 7D8R A 396 499 UNP O66738 O66738_AQUAE 8 111 DBREF 7D8R B 324 395 UNP O75030 MITF_HUMAN 324 395 DBREF 7D8R B 396 499 UNP O66738 O66738_AQUAE 8 111 DBREF 7D8R C 324 395 UNP O75030 MITF_HUMAN 324 395 DBREF 7D8R C 396 499 UNP O66738 O66738_AQUAE 8 111 DBREF 7D8R D 324 395 UNP O75030 MITF_HUMAN 324 395 DBREF 7D8R D 396 499 UNP O66738 O66738_AQUAE 8 111 SEQADV 7D8R SER A 322 UNP O75030 EXPRESSION TAG SEQADV 7D8R LEU A 323 UNP O75030 EXPRESSION TAG SEQADV 7D8R ALA A 500 UNP O66738 EXPRESSION TAG SEQADV 7D8R ALA A 501 UNP O66738 EXPRESSION TAG SEQADV 7D8R LEU A 502 UNP O66738 EXPRESSION TAG SEQADV 7D8R GLU A 503 UNP O66738 EXPRESSION TAG SEQADV 7D8R SER B 322 UNP O75030 EXPRESSION TAG SEQADV 7D8R LEU B 323 UNP O75030 EXPRESSION TAG SEQADV 7D8R ALA B 500 UNP O66738 EXPRESSION TAG SEQADV 7D8R ALA B 501 UNP O66738 EXPRESSION TAG SEQADV 7D8R LEU B 502 UNP O66738 EXPRESSION TAG SEQADV 7D8R GLU B 503 UNP O66738 EXPRESSION TAG SEQADV 7D8R SER C 322 UNP O75030 EXPRESSION TAG SEQADV 7D8R LEU C 323 UNP O75030 EXPRESSION TAG SEQADV 7D8R ALA C 500 UNP O66738 EXPRESSION TAG SEQADV 7D8R ALA C 501 UNP O66738 EXPRESSION TAG SEQADV 7D8R LEU C 502 UNP O66738 EXPRESSION TAG SEQADV 7D8R GLU C 503 UNP O66738 EXPRESSION TAG SEQADV 7D8R SER D 322 UNP O75030 EXPRESSION TAG SEQADV 7D8R LEU D 323 UNP O75030 EXPRESSION TAG SEQADV 7D8R ALA D 500 UNP O66738 EXPRESSION TAG SEQADV 7D8R ALA D 501 UNP O66738 EXPRESSION TAG SEQADV 7D8R LEU D 502 UNP O66738 EXPRESSION TAG SEQADV 7D8R GLU D 503 UNP O66738 EXPRESSION TAG SEQRES 1 A 182 SER LEU ARG PHE ASN ILE ASN ASP ARG ILE LYS GLU LEU SEQRES 2 A 182 GLY THR LEU ILE PRO LYS SER ASN ASP PRO ASP MET ARG SEQRES 3 A 182 TRP ASN LYS GLY THR ILE LEU LYS ALA SER VAL ASP TYR SEQRES 4 A 182 ILE ARG LYS LEU GLN ARG GLU GLN GLN ARG ALA LYS GLU SEQRES 5 A 182 LEU GLU ASN ARG GLN LYS LYS LEU GLU HIS ALA ASN ARG SEQRES 6 A 182 HIS LEU LEU LEU ARG ILE GLN GLU LEU GLY ILE GLU ASP SEQRES 7 A 182 PHE LEU LYS VAL ASP LEU ARG VAL ALA LYS VAL LEU SER SEQRES 8 A 182 ALA GLU ARG VAL GLU GLY SER GLU LYS LEU LEU LYS LEU SEQRES 9 A 182 THR LEU SER LEU GLY ASP GLU GLU ARG THR VAL VAL ALA SEQRES 10 A 182 GLY ILE ALA LYS TYR TYR THR PRO GLU GLU LEU VAL GLY SEQRES 11 A 182 LYS LYS ILE VAL ILE VAL ALA ASN LEU LYS PRO ARG LYS SEQRES 12 A 182 ILE PHE GLY ILE GLU SER GLN GLY MET ILE LEU ALA ALA SEQRES 13 A 182 SER ASP GLY GLU ASN LEU SER VAL ILE VAL PRO ASP ARG SEQRES 14 A 182 ASP VAL LYS GLU GLY ALA LYS LEU SER ALA ALA LEU GLU SEQRES 1 B 182 SER LEU ARG PHE ASN ILE ASN ASP ARG ILE LYS GLU LEU SEQRES 2 B 182 GLY THR LEU ILE PRO LYS SER ASN ASP PRO ASP MET ARG SEQRES 3 B 182 TRP ASN LYS GLY THR ILE LEU LYS ALA SER VAL ASP TYR SEQRES 4 B 182 ILE ARG LYS LEU GLN ARG GLU GLN GLN ARG ALA LYS GLU SEQRES 5 B 182 LEU GLU ASN ARG GLN LYS LYS LEU GLU HIS ALA ASN ARG SEQRES 6 B 182 HIS LEU LEU LEU ARG ILE GLN GLU LEU GLY ILE GLU ASP SEQRES 7 B 182 PHE LEU LYS VAL ASP LEU ARG VAL ALA LYS VAL LEU SER SEQRES 8 B 182 ALA GLU ARG VAL GLU GLY SER GLU LYS LEU LEU LYS LEU SEQRES 9 B 182 THR LEU SER LEU GLY ASP GLU GLU ARG THR VAL VAL ALA SEQRES 10 B 182 GLY ILE ALA LYS TYR TYR THR PRO GLU GLU LEU VAL GLY SEQRES 11 B 182 LYS LYS ILE VAL ILE VAL ALA ASN LEU LYS PRO ARG LYS SEQRES 12 B 182 ILE PHE GLY ILE GLU SER GLN GLY MET ILE LEU ALA ALA SEQRES 13 B 182 SER ASP GLY GLU ASN LEU SER VAL ILE VAL PRO ASP ARG SEQRES 14 B 182 ASP VAL LYS GLU GLY ALA LYS LEU SER ALA ALA LEU GLU SEQRES 1 C 182 SER LEU ARG PHE ASN ILE ASN ASP ARG ILE LYS GLU LEU SEQRES 2 C 182 GLY THR LEU ILE PRO LYS SER ASN ASP PRO ASP MET ARG SEQRES 3 C 182 TRP ASN LYS GLY THR ILE LEU LYS ALA SER VAL ASP TYR SEQRES 4 C 182 ILE ARG LYS LEU GLN ARG GLU GLN GLN ARG ALA LYS GLU SEQRES 5 C 182 LEU GLU ASN ARG GLN LYS LYS LEU GLU HIS ALA ASN ARG SEQRES 6 C 182 HIS LEU LEU LEU ARG ILE GLN GLU LEU GLY ILE GLU ASP SEQRES 7 C 182 PHE LEU LYS VAL ASP LEU ARG VAL ALA LYS VAL LEU SER SEQRES 8 C 182 ALA GLU ARG VAL GLU GLY SER GLU LYS LEU LEU LYS LEU SEQRES 9 C 182 THR LEU SER LEU GLY ASP GLU GLU ARG THR VAL VAL ALA SEQRES 10 C 182 GLY ILE ALA LYS TYR TYR THR PRO GLU GLU LEU VAL GLY SEQRES 11 C 182 LYS LYS ILE VAL ILE VAL ALA ASN LEU LYS PRO ARG LYS SEQRES 12 C 182 ILE PHE GLY ILE GLU SER GLN GLY MET ILE LEU ALA ALA SEQRES 13 C 182 SER ASP GLY GLU ASN LEU SER VAL ILE VAL PRO ASP ARG SEQRES 14 C 182 ASP VAL LYS GLU GLY ALA LYS LEU SER ALA ALA LEU GLU SEQRES 1 D 182 SER LEU ARG PHE ASN ILE ASN ASP ARG ILE LYS GLU LEU SEQRES 2 D 182 GLY THR LEU ILE PRO LYS SER ASN ASP PRO ASP MET ARG SEQRES 3 D 182 TRP ASN LYS GLY THR ILE LEU LYS ALA SER VAL ASP TYR SEQRES 4 D 182 ILE ARG LYS LEU GLN ARG GLU GLN GLN ARG ALA LYS GLU SEQRES 5 D 182 LEU GLU ASN ARG GLN LYS LYS LEU GLU HIS ALA ASN ARG SEQRES 6 D 182 HIS LEU LEU LEU ARG ILE GLN GLU LEU GLY ILE GLU ASP SEQRES 7 D 182 PHE LEU LYS VAL ASP LEU ARG VAL ALA LYS VAL LEU SER SEQRES 8 D 182 ALA GLU ARG VAL GLU GLY SER GLU LYS LEU LEU LYS LEU SEQRES 9 D 182 THR LEU SER LEU GLY ASP GLU GLU ARG THR VAL VAL ALA SEQRES 10 D 182 GLY ILE ALA LYS TYR TYR THR PRO GLU GLU LEU VAL GLY SEQRES 11 D 182 LYS LYS ILE VAL ILE VAL ALA ASN LEU LYS PRO ARG LYS SEQRES 12 D 182 ILE PHE GLY ILE GLU SER GLN GLY MET ILE LEU ALA ALA SEQRES 13 D 182 SER ASP GLY GLU ASN LEU SER VAL ILE VAL PRO ASP ARG SEQRES 14 D 182 ASP VAL LYS GLU GLY ALA LYS LEU SER ALA ALA LEU GLU FORMUL 5 HOH *38(H2 O) HELIX 1 AA1 ILE A 327 ILE A 338 1 12 HELIX 2 AA2 LYS A 350 GLU A 394 1 45 HELIX 3 AA3 GLY A 396 LYS A 402 1 7 HELIX 4 AA4 THR A 445 VAL A 450 1 6 HELIX 5 AA5 ILE B 327 ILE B 338 1 12 HELIX 6 AA6 LYS B 350 LYS B 402 1 53 HELIX 7 AA7 ILE B 440 TYR B 444 5 5 HELIX 8 AA8 THR B 445 VAL B 450 1 6 HELIX 9 AA9 ASN C 328 GLY C 335 1 8 HELIX 10 AB1 LYS C 350 GLN C 368 1 19 HELIX 11 AB2 GLN C 369 LYS C 402 1 34 HELIX 12 AB3 THR C 445 VAL C 450 1 6 HELIX 13 AB4 ILE D 327 THR D 336 1 10 HELIX 14 AB5 LYS D 350 GLU D 394 1 45 HELIX 15 AB6 GLY D 396 LYS D 402 1 7 HELIX 16 AB7 THR D 445 VAL D 450 1 6 SHEET 1 AA1 5 GLU A 433 ALA A 438 0 SHEET 2 AA1 5 LEU A 423 SER A 428 -1 N LEU A 425 O VAL A 436 SHEET 3 AA1 5 LEU A 405 ARG A 415 -1 N LEU A 411 O THR A 426 SHEET 4 AA1 5 LYS A 453 VAL A 457 -1 O ILE A 454 N ALA A 408 SHEET 5 AA1 5 MET A 473 ILE A 474 -1 O MET A 473 N VAL A 457 SHEET 1 AA2 5 ALA A 476 SER A 478 0 SHEET 2 AA2 5 LEU A 483 PRO A 488 -1 O SER A 484 N ALA A 477 SHEET 3 AA2 5 LEU C 483 PRO C 488 -1 O VAL C 487 N VAL A 487 SHEET 4 AA2 5 ALA C 476 SER C 478 -1 N ALA C 477 O SER C 484 SHEET 5 AA2 5 LEU A 498 SER A 499 -1 N SER A 499 O ALA C 476 SHEET 1 AA3 9 GLU B 433 ALA B 438 0 SHEET 2 AA3 9 LEU B 423 SER B 428 -1 N LEU B 425 O VAL B 436 SHEET 3 AA3 9 LEU B 405 ARG B 415 -1 N LEU B 411 O THR B 426 SHEET 4 AA3 9 LYS B 497 ALA B 500 -1 O LEU B 498 N LEU B 405 SHEET 5 AA3 9 MET D 473 SER D 478 -1 O ALA D 476 N SER B 499 SHEET 6 AA3 9 LYS D 453 VAL D 457 -1 N VAL D 457 O MET D 473 SHEET 7 AA3 9 LEU D 405 VAL D 416 -1 N ALA D 408 O ILE D 454 SHEET 8 AA3 9 SER D 419 SER D 428 -1 O SER D 428 N LYS D 409 SHEET 9 AA3 9 GLU D 433 ALA D 438 -1 O VAL D 436 N LEU D 425 SHEET 1 AA4 9 MET B 473 ILE B 474 0 SHEET 2 AA4 9 LYS B 453 VAL B 457 -1 N VAL B 457 O MET B 473 SHEET 3 AA4 9 LEU B 405 ARG B 415 -1 N ALA B 408 O ILE B 454 SHEET 4 AA4 9 LYS B 497 ALA B 500 -1 O LEU B 498 N LEU B 405 SHEET 5 AA4 9 MET D 473 SER D 478 -1 O ALA D 476 N SER B 499 SHEET 6 AA4 9 LEU D 483 PRO D 488 -1 O SER D 484 N ALA D 477 SHEET 7 AA4 9 LEU B 483 PRO B 488 -1 N VAL B 487 O VAL D 487 SHEET 8 AA4 9 ALA B 476 SER B 478 -1 N ALA B 477 O SER B 484 SHEET 9 AA4 9 LEU D 498 SER D 499 -1 O SER D 499 N ALA B 476 SHEET 1 AA5 2 ARG B 463 ILE B 465 0 SHEET 2 AA5 2 ILE B 468 SER B 470 -1 O ILE B 468 N ILE B 465 SHEET 1 AA6 5 GLU C 433 ALA C 438 0 SHEET 2 AA6 5 LEU C 423 SER C 428 -1 N LEU C 425 O VAL C 436 SHEET 3 AA6 5 LEU C 405 ARG C 415 -1 N LEU C 411 O THR C 426 SHEET 4 AA6 5 LYS C 453 VAL C 457 -1 O ILE C 454 N ALA C 408 SHEET 5 AA6 5 MET C 473 ILE C 474 -1 O MET C 473 N VAL C 457 SHEET 1 AA7 2 ARG C 463 ILE C 465 0 SHEET 2 AA7 2 ILE C 468 SER C 470 -1 O ILE C 468 N ILE C 465 CRYST1 41.910 78.120 80.590 93.18 105.03 105.62 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023861 0.006671 0.007373 0.00000 SCALE2 0.000000 0.013292 0.001807 0.00000 SCALE3 0.000000 0.000000 0.012966 0.00000