HEADER TRANSCRIPTION 09-OCT-20 7D8S TITLE MITF BHLHLZ APO STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR,METHIONYL- COMPND 3 TRNA SYNTHETASE BETA SUBUNIT; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: FUSION PROTEIN OF MICROPHTHALMIA-ASSOCIATED COMPND 8 TRANSCRIPTION FACTOR AND METHIONYL-TRNA SYNTHETASE BETA SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, AQUIFEX AEOLICUS VF5; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 224324; SOURCE 5 STRAIN: VF5; SOURCE 6 GENE: MITF, BHLHE32, METG', AQ_422; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.GUO,P.FANG,J.WANG REVDAT 3 29-NOV-23 7D8S 1 REMARK REVDAT 2 27-SEP-23 7D8S 1 JRNL REVDAT 1 13-OCT-21 7D8S 0 JRNL AUTH Z.LIU,K.CHEN,J.DAI,P.XU,W.SUN,W.LIU,Z.ZHAO,S.P.BENNETT,P.LI, JRNL AUTH 2 T.MA,Y.LIN,A.KAWAKAMI,J.YU,F.WANG,C.WANG,M.LI,P.CHASE, JRNL AUTH 3 P.HODDER,T.P.SPICER,L.SCAMPAVIA,C.CAO,L.PAN,J.DONG,Y.CHEN, JRNL AUTH 4 B.YU,M.GUO,P.FANG,D.E.FISHER,J.WANG JRNL TITL A UNIQUE HYPERDYNAMIC DIMER INTERFACE PERMITS SMALL MOLECULE JRNL TITL 2 PERTURBATION OF THE MELANOMA ONCOPROTEIN MITF FOR MELANOMA JRNL TITL 3 THERAPY. JRNL REF CELL RES. V. 33 55 2023 JRNL REFN ISSN 1001-0602 JRNL PMID 36588115 JRNL DOI 10.1038/S41422-022-00744-5 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 34574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.3600 - 2.2800 0.98 0 171 0.0000 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5496 REMARK 3 ANGLE : 1.048 7415 REMARK 3 CHIRALITY : 0.079 902 REMARK 3 PLANARITY : 0.004 942 REMARK 3 DIHEDRAL : 16.383 2050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.9343 0.1744 -0.8000 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.3099 REMARK 3 T33: 0.2844 T12: 0.0149 REMARK 3 T13: -0.0232 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.2533 L22: 0.3727 REMARK 3 L33: 0.4834 L12: -0.0435 REMARK 3 L13: -0.2223 L23: 0.0129 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0578 S13: 0.0084 REMARK 3 S21: 0.0301 S22: 0.0398 S23: -0.0043 REMARK 3 S31: -0.0330 S32: -0.0511 S33: -0.0421 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34574 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6KTD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE PH 4.5, AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 ALA A 307 REMARK 465 LYS A 308 REMARK 465 GLU A 309 REMARK 465 ARG A 310 REMARK 465 GLN A 311 REMARK 465 LYS A 312 REMARK 465 LYS A 313 REMARK 465 ASP A 314 REMARK 465 ASN A 315 REMARK 465 ARG A 321 REMARK 465 ARG A 322 REMARK 465 ARG A 323 REMARK 465 SER B 305 REMARK 465 LEU B 306 REMARK 465 ALA B 307 REMARK 465 LYS B 308 REMARK 465 GLU B 309 REMARK 465 ARG B 310 REMARK 465 GLN B 311 REMARK 465 LYS B 312 REMARK 465 LYS B 313 REMARK 465 ASP B 314 REMARK 465 ASN B 315 REMARK 465 HIS B 316 REMARK 465 ASN B 317 REMARK 465 LEU B 318 REMARK 465 ILE B 319 REMARK 465 GLU B 320 REMARK 465 ARG B 321 REMARK 465 ARG B 322 REMARK 465 ARG B 323 REMARK 465 SER C 305 REMARK 465 LEU C 306 REMARK 465 ALA C 307 REMARK 465 LYS C 308 REMARK 465 GLU C 309 REMARK 465 ARG C 310 REMARK 465 GLN C 311 REMARK 465 LYS C 312 REMARK 465 LYS C 313 REMARK 465 SER C 341 REMARK 465 ASN C 342 REMARK 465 ASP C 343 REMARK 465 PRO C 344 REMARK 465 ASP C 345 REMARK 465 MET C 346 REMARK 465 SER D 305 REMARK 465 LEU D 306 REMARK 465 ALA D 307 REMARK 465 LYS D 308 REMARK 465 GLU D 309 REMARK 465 ARG D 310 REMARK 465 GLN D 311 REMARK 465 LYS D 312 REMARK 465 LYS D 313 REMARK 465 ASP D 314 REMARK 465 ASN D 315 REMARK 465 HIS D 316 REMARK 465 ASN D 317 REMARK 465 LEU D 318 REMARK 465 ILE D 319 REMARK 465 GLU D 320 REMARK 465 ARG D 321 REMARK 465 ARG D 322 REMARK 465 ARG D 323 REMARK 465 SER D 341 REMARK 465 ASN D 342 REMARK 465 ASP D 343 REMARK 465 PRO D 344 REMARK 465 ASP D 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 316 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 317 CG OD1 ND2 REMARK 470 LEU A 318 CG CD1 CD2 REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 470 SER A 341 OG REMARK 470 ASN A 342 CG OD1 ND2 REMARK 470 ASP A 343 CG OD1 OD2 REMARK 470 ASP A 345 CG OD1 OD2 REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 372 CD CE NZ REMARK 470 ARG A 391 NE CZ NH1 NH2 REMARK 470 ILE A 392 CG1 CG2 CD1 REMARK 470 GLN A 393 CG CD OE1 NE2 REMARK 470 ARG A 415 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 LYS A 424 NZ REMARK 470 LYS A 442 CD CE NZ REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 LYS A 493 CG CD CE NZ REMARK 470 GLU A 503 CG CD OE1 OE2 REMARK 470 ARG B 324 CG CD NE CZ NH1 NH2 REMARK 470 SER B 341 OG REMARK 470 ASN B 342 CG OD1 ND2 REMARK 470 ASP B 343 CG OD1 OD2 REMARK 470 ASP B 345 CG OD1 OD2 REMARK 470 MET B 346 CG SD CE REMARK 470 ARG B 347 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 372 CE NZ REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 470 GLU B 414 CG CD OE1 OE2 REMARK 470 ARG B 415 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 417 CG CD OE1 OE2 REMARK 470 SER B 419 OG REMARK 470 GLU B 420 CG CD OE1 OE2 REMARK 470 LYS B 421 CD CE NZ REMARK 470 LYS B 424 CE NZ REMARK 470 ASP B 431 CG OD1 OD2 REMARK 470 LYS B 442 CG CD CE NZ REMARK 470 GLU B 447 CG CD OE1 OE2 REMARK 470 LYS B 461 CG CD CE NZ REMARK 470 ARG B 463 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 464 CG CD CE NZ REMARK 470 ILE B 465 CG1 CG2 CD1 REMARK 470 ILE B 468 CG1 CG2 CD1 REMARK 470 GLU B 469 CG CD OE1 OE2 REMARK 470 ASP B 479 CG OD1 OD2 REMARK 470 LYS B 493 CG CD CE NZ REMARK 470 GLU B 503 CG CD OE1 OE2 REMARK 470 ASP C 314 CG OD1 OD2 REMARK 470 GLU C 320 CG CD OE1 OE2 REMARK 470 ARG C 321 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 322 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 323 CD NE CZ NH1 NH2 REMARK 470 ARG C 324 NE CZ NH1 NH2 REMARK 470 LYS C 340 CG CD CE NZ REMARK 470 ARG C 347 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 363 CE NZ REMARK 470 LYS C 372 CG CD CE NZ REMARK 470 ARG C 391 NE CZ NH1 NH2 REMARK 470 ILE C 392 CG1 CG2 CD1 REMARK 470 LEU C 395 CG CD1 CD2 REMARK 470 GLU C 417 CG CD OE1 OE2 REMARK 470 LYS C 421 CG CD CE NZ REMARK 470 GLU C 447 CG CD OE1 OE2 REMARK 470 ARG D 324 CG CD NE CZ NH1 NH2 REMARK 470 PHE D 325 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 340 CG CD CE NZ REMARK 470 ARG D 347 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 350 CD CE NZ REMARK 470 LYS D 355 NZ REMARK 470 GLN D 369 CG CD OE1 NE2 REMARK 470 ARG D 370 CD NE CZ NH1 NH2 REMARK 470 LYS D 372 CD CE NZ REMARK 470 LYS D 379 CE NZ REMARK 470 LYS D 409 CE NZ REMARK 470 GLU D 414 CG CD OE1 OE2 REMARK 470 LYS D 421 CD CE NZ REMARK 470 LYS D 442 CG CD CE NZ REMARK 470 GLU D 447 CG CD OE1 OE2 REMARK 470 ARG D 463 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 464 CD CE NZ REMARK 470 GLU D 469 CD OE1 OE2 REMARK 470 GLU D 481 CG CD OE1 OE2 REMARK 470 LYS D 493 CD CE NZ REMARK 470 GLU D 503 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 317 -10.31 64.31 REMARK 500 ASN A 342 3.04 85.89 REMARK 500 LYS B 340 -33.73 -34.69 REMARK 500 ASN B 342 -151.19 45.38 REMARK 500 PRO B 344 78.90 -67.33 REMARK 500 ASP B 345 -17.10 -173.73 REMARK 500 ASP B 479 -9.67 63.46 REMARK 500 TYR C 443 -59.92 -123.77 REMARK 500 GLU C 481 -60.88 -126.95 REMARK 500 LYS D 421 -61.09 -96.54 REMARK 500 ASP D 479 -11.53 69.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7D8R RELATED DB: PDB DBREF 7D8S A 306 395 UNP O75030 MITF_HUMAN 306 395 DBREF 7D8S A 396 499 UNP O66738 O66738_AQUAE 8 111 DBREF 7D8S B 306 395 UNP O75030 MITF_HUMAN 306 395 DBREF 7D8S B 396 499 UNP O66738 O66738_AQUAE 8 111 DBREF 7D8S C 306 395 UNP O75030 MITF_HUMAN 306 395 DBREF 7D8S C 396 499 UNP O66738 O66738_AQUAE 8 111 DBREF 7D8S D 306 395 UNP O75030 MITF_HUMAN 306 395 DBREF 7D8S D 396 499 UNP O66738 O66738_AQUAE 8 111 SEQADV 7D8S SER A 305 UNP O75030 EXPRESSION TAG SEQADV 7D8S CYS A 385 UNP O75030 ASN 385 ENGINEERED MUTATION SEQADV 7D8S ALA A 500 UNP O66738 EXPRESSION TAG SEQADV 7D8S ALA A 501 UNP O66738 EXPRESSION TAG SEQADV 7D8S LEU A 502 UNP O66738 EXPRESSION TAG SEQADV 7D8S GLU A 503 UNP O66738 EXPRESSION TAG SEQADV 7D8S SER B 305 UNP O75030 EXPRESSION TAG SEQADV 7D8S CYS B 385 UNP O75030 ASN 385 ENGINEERED MUTATION SEQADV 7D8S ALA B 500 UNP O66738 EXPRESSION TAG SEQADV 7D8S ALA B 501 UNP O66738 EXPRESSION TAG SEQADV 7D8S LEU B 502 UNP O66738 EXPRESSION TAG SEQADV 7D8S GLU B 503 UNP O66738 EXPRESSION TAG SEQADV 7D8S SER C 305 UNP O75030 EXPRESSION TAG SEQADV 7D8S CYS C 385 UNP O75030 ASN 385 ENGINEERED MUTATION SEQADV 7D8S ALA C 500 UNP O66738 EXPRESSION TAG SEQADV 7D8S ALA C 501 UNP O66738 EXPRESSION TAG SEQADV 7D8S LEU C 502 UNP O66738 EXPRESSION TAG SEQADV 7D8S GLU C 503 UNP O66738 EXPRESSION TAG SEQADV 7D8S SER D 305 UNP O75030 EXPRESSION TAG SEQADV 7D8S CYS D 385 UNP O75030 ASN 385 ENGINEERED MUTATION SEQADV 7D8S ALA D 500 UNP O66738 EXPRESSION TAG SEQADV 7D8S ALA D 501 UNP O66738 EXPRESSION TAG SEQADV 7D8S LEU D 502 UNP O66738 EXPRESSION TAG SEQADV 7D8S GLU D 503 UNP O66738 EXPRESSION TAG SEQRES 1 A 199 SER LEU ALA LYS GLU ARG GLN LYS LYS ASP ASN HIS ASN SEQRES 2 A 199 LEU ILE GLU ARG ARG ARG ARG PHE ASN ILE ASN ASP ARG SEQRES 3 A 199 ILE LYS GLU LEU GLY THR LEU ILE PRO LYS SER ASN ASP SEQRES 4 A 199 PRO ASP MET ARG TRP ASN LYS GLY THR ILE LEU LYS ALA SEQRES 5 A 199 SER VAL ASP TYR ILE ARG LYS LEU GLN ARG GLU GLN GLN SEQRES 6 A 199 ARG ALA LYS GLU LEU GLU ASN ARG GLN LYS LYS LEU GLU SEQRES 7 A 199 HIS ALA CYS ARG HIS LEU LEU LEU ARG ILE GLN GLU LEU SEQRES 8 A 199 GLY ILE GLU ASP PHE LEU LYS VAL ASP LEU ARG VAL ALA SEQRES 9 A 199 LYS VAL LEU SER ALA GLU ARG VAL GLU GLY SER GLU LYS SEQRES 10 A 199 LEU LEU LYS LEU THR LEU SER LEU GLY ASP GLU GLU ARG SEQRES 11 A 199 THR VAL VAL ALA GLY ILE ALA LYS TYR TYR THR PRO GLU SEQRES 12 A 199 GLU LEU VAL GLY LYS LYS ILE VAL ILE VAL ALA ASN LEU SEQRES 13 A 199 LYS PRO ARG LYS ILE PHE GLY ILE GLU SER GLN GLY MET SEQRES 14 A 199 ILE LEU ALA ALA SER ASP GLY GLU ASN LEU SER VAL ILE SEQRES 15 A 199 VAL PRO ASP ARG ASP VAL LYS GLU GLY ALA LYS LEU SER SEQRES 16 A 199 ALA ALA LEU GLU SEQRES 1 B 199 SER LEU ALA LYS GLU ARG GLN LYS LYS ASP ASN HIS ASN SEQRES 2 B 199 LEU ILE GLU ARG ARG ARG ARG PHE ASN ILE ASN ASP ARG SEQRES 3 B 199 ILE LYS GLU LEU GLY THR LEU ILE PRO LYS SER ASN ASP SEQRES 4 B 199 PRO ASP MET ARG TRP ASN LYS GLY THR ILE LEU LYS ALA SEQRES 5 B 199 SER VAL ASP TYR ILE ARG LYS LEU GLN ARG GLU GLN GLN SEQRES 6 B 199 ARG ALA LYS GLU LEU GLU ASN ARG GLN LYS LYS LEU GLU SEQRES 7 B 199 HIS ALA CYS ARG HIS LEU LEU LEU ARG ILE GLN GLU LEU SEQRES 8 B 199 GLY ILE GLU ASP PHE LEU LYS VAL ASP LEU ARG VAL ALA SEQRES 9 B 199 LYS VAL LEU SER ALA GLU ARG VAL GLU GLY SER GLU LYS SEQRES 10 B 199 LEU LEU LYS LEU THR LEU SER LEU GLY ASP GLU GLU ARG SEQRES 11 B 199 THR VAL VAL ALA GLY ILE ALA LYS TYR TYR THR PRO GLU SEQRES 12 B 199 GLU LEU VAL GLY LYS LYS ILE VAL ILE VAL ALA ASN LEU SEQRES 13 B 199 LYS PRO ARG LYS ILE PHE GLY ILE GLU SER GLN GLY MET SEQRES 14 B 199 ILE LEU ALA ALA SER ASP GLY GLU ASN LEU SER VAL ILE SEQRES 15 B 199 VAL PRO ASP ARG ASP VAL LYS GLU GLY ALA LYS LEU SER SEQRES 16 B 199 ALA ALA LEU GLU SEQRES 1 C 199 SER LEU ALA LYS GLU ARG GLN LYS LYS ASP ASN HIS ASN SEQRES 2 C 199 LEU ILE GLU ARG ARG ARG ARG PHE ASN ILE ASN ASP ARG SEQRES 3 C 199 ILE LYS GLU LEU GLY THR LEU ILE PRO LYS SER ASN ASP SEQRES 4 C 199 PRO ASP MET ARG TRP ASN LYS GLY THR ILE LEU LYS ALA SEQRES 5 C 199 SER VAL ASP TYR ILE ARG LYS LEU GLN ARG GLU GLN GLN SEQRES 6 C 199 ARG ALA LYS GLU LEU GLU ASN ARG GLN LYS LYS LEU GLU SEQRES 7 C 199 HIS ALA CYS ARG HIS LEU LEU LEU ARG ILE GLN GLU LEU SEQRES 8 C 199 GLY ILE GLU ASP PHE LEU LYS VAL ASP LEU ARG VAL ALA SEQRES 9 C 199 LYS VAL LEU SER ALA GLU ARG VAL GLU GLY SER GLU LYS SEQRES 10 C 199 LEU LEU LYS LEU THR LEU SER LEU GLY ASP GLU GLU ARG SEQRES 11 C 199 THR VAL VAL ALA GLY ILE ALA LYS TYR TYR THR PRO GLU SEQRES 12 C 199 GLU LEU VAL GLY LYS LYS ILE VAL ILE VAL ALA ASN LEU SEQRES 13 C 199 LYS PRO ARG LYS ILE PHE GLY ILE GLU SER GLN GLY MET SEQRES 14 C 199 ILE LEU ALA ALA SER ASP GLY GLU ASN LEU SER VAL ILE SEQRES 15 C 199 VAL PRO ASP ARG ASP VAL LYS GLU GLY ALA LYS LEU SER SEQRES 16 C 199 ALA ALA LEU GLU SEQRES 1 D 199 SER LEU ALA LYS GLU ARG GLN LYS LYS ASP ASN HIS ASN SEQRES 2 D 199 LEU ILE GLU ARG ARG ARG ARG PHE ASN ILE ASN ASP ARG SEQRES 3 D 199 ILE LYS GLU LEU GLY THR LEU ILE PRO LYS SER ASN ASP SEQRES 4 D 199 PRO ASP MET ARG TRP ASN LYS GLY THR ILE LEU LYS ALA SEQRES 5 D 199 SER VAL ASP TYR ILE ARG LYS LEU GLN ARG GLU GLN GLN SEQRES 6 D 199 ARG ALA LYS GLU LEU GLU ASN ARG GLN LYS LYS LEU GLU SEQRES 7 D 199 HIS ALA CYS ARG HIS LEU LEU LEU ARG ILE GLN GLU LEU SEQRES 8 D 199 GLY ILE GLU ASP PHE LEU LYS VAL ASP LEU ARG VAL ALA SEQRES 9 D 199 LYS VAL LEU SER ALA GLU ARG VAL GLU GLY SER GLU LYS SEQRES 10 D 199 LEU LEU LYS LEU THR LEU SER LEU GLY ASP GLU GLU ARG SEQRES 11 D 199 THR VAL VAL ALA GLY ILE ALA LYS TYR TYR THR PRO GLU SEQRES 12 D 199 GLU LEU VAL GLY LYS LYS ILE VAL ILE VAL ALA ASN LEU SEQRES 13 D 199 LYS PRO ARG LYS ILE PHE GLY ILE GLU SER GLN GLY MET SEQRES 14 D 199 ILE LEU ALA ALA SER ASP GLY GLU ASN LEU SER VAL ILE SEQRES 15 D 199 VAL PRO ASP ARG ASP VAL LYS GLU GLY ALA LYS LEU SER SEQRES 16 D 199 ALA ALA LEU GLU HET SO4 B 601 5 HET SO4 C 601 5 HET SO4 D 601 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *312(H2 O) HELIX 1 AA1 ASN A 326 ILE A 338 1 13 HELIX 2 AA2 ASN A 349 LEU A 390 1 42 HELIX 3 AA3 ILE A 397 LYS A 402 1 6 HELIX 4 AA4 THR A 445 VAL A 450 1 6 HELIX 5 AA5 ASN B 326 ILE B 338 1 13 HELIX 6 AA6 ASN B 349 LEU B 390 1 42 HELIX 7 AA7 GLY B 396 LYS B 402 1 7 HELIX 8 AA8 THR B 445 VAL B 450 1 6 HELIX 9 AA9 ASN C 326 ILE C 338 1 13 HELIX 10 AB1 ASN C 349 LEU C 389 1 41 HELIX 11 AB2 ARG C 391 LEU C 395 5 5 HELIX 12 AB3 ILE C 397 LYS C 402 1 6 HELIX 13 AB4 THR C 445 VAL C 450 1 6 HELIX 14 AB5 PHE D 325 ILE D 338 1 14 HELIX 15 AB6 ASN D 349 LEU D 390 1 42 HELIX 16 AB7 GLY D 396 LEU D 401 1 6 HELIX 17 AB8 THR D 445 VAL D 450 1 6 SHEET 1 AA1 5 GLU A 433 ALA A 438 0 SHEET 2 AA1 5 LEU A 423 SER A 428 -1 N LEU A 427 O ARG A 434 SHEET 3 AA1 5 LEU A 405 ARG A 415 -1 N SER A 412 O THR A 426 SHEET 4 AA1 5 LYS A 453 VAL A 457 -1 O ILE A 454 N ALA A 408 SHEET 5 AA1 5 MET A 473 ILE A 474 -1 O MET A 473 N VAL A 457 SHEET 1 AA2 2 ARG A 463 ILE A 465 0 SHEET 2 AA2 2 ILE A 468 SER A 470 -1 O ILE A 468 N ILE A 465 SHEET 1 AA3 6 SER A 499 ALA A 500 0 SHEET 2 AA3 6 MET D 473 ALA D 477 -1 O ALA D 476 N SER A 499 SHEET 3 AA3 6 LYS D 453 VAL D 457 -1 N VAL D 457 O MET D 473 SHEET 4 AA3 6 LEU D 405 ARG D 415 -1 N ARG D 406 O ILE D 456 SHEET 5 AA3 6 LEU D 423 SER D 428 -1 O LYS D 424 N GLU D 414 SHEET 6 AA3 6 GLU D 433 ALA D 438 -1 O ARG D 434 N LEU D 427 SHEET 1 AA4 6 SER A 499 ALA A 500 0 SHEET 2 AA4 6 MET D 473 ALA D 477 -1 O ALA D 476 N SER A 499 SHEET 3 AA4 6 SER D 484 PRO D 488 -1 O SER D 484 N ALA D 477 SHEET 4 AA4 6 LEU A 483 PRO A 488 -1 N VAL A 487 O VAL D 487 SHEET 5 AA4 6 ALA A 476 SER A 478 -1 N ALA A 477 O SER A 484 SHEET 6 AA4 6 LEU D 498 SER D 499 -1 O SER D 499 N ALA A 476 SHEET 1 AA5 6 GLU B 433 ALA B 438 0 SHEET 2 AA5 6 LEU B 423 SER B 428 -1 N LEU B 427 O ARG B 434 SHEET 3 AA5 6 LEU B 405 ARG B 415 -1 N GLU B 414 O LYS B 424 SHEET 4 AA5 6 LYS B 453 VAL B 457 -1 O ILE B 454 N ALA B 408 SHEET 5 AA5 6 MET B 473 ALA B 477 -1 O MET B 473 N VAL B 457 SHEET 6 AA5 6 LEU C 498 ALA C 500 -1 O SER C 499 N ALA B 476 SHEET 1 AA6 9 GLU B 433 ALA B 438 0 SHEET 2 AA6 9 LEU B 423 SER B 428 -1 N LEU B 427 O ARG B 434 SHEET 3 AA6 9 LEU B 405 ARG B 415 -1 N GLU B 414 O LYS B 424 SHEET 4 AA6 9 LYS B 497 SER B 499 -1 O LEU B 498 N LEU B 405 SHEET 5 AA6 9 ALA C 476 SER C 478 -1 O ALA C 476 N SER B 499 SHEET 6 AA6 9 LEU C 483 PRO C 488 -1 O SER C 484 N ALA C 477 SHEET 7 AA6 9 SER B 484 PRO B 488 -1 N VAL B 487 O VAL C 487 SHEET 8 AA6 9 MET B 473 ALA B 477 -1 N ALA B 477 O SER B 484 SHEET 9 AA6 9 LEU C 498 ALA C 500 -1 O SER C 499 N ALA B 476 SHEET 1 AA7 2 ARG B 463 ILE B 465 0 SHEET 2 AA7 2 ILE B 468 SER B 470 -1 O ILE B 468 N ILE B 465 SHEET 1 AA8 5 GLU C 433 ALA C 438 0 SHEET 2 AA8 5 LEU C 423 SER C 428 -1 N LEU C 425 O VAL C 436 SHEET 3 AA8 5 LEU C 405 ARG C 415 -1 N GLU C 414 O LYS C 424 SHEET 4 AA8 5 LYS C 453 VAL C 457 -1 O ILE C 454 N ALA C 408 SHEET 5 AA8 5 MET C 473 ILE C 474 -1 O MET C 473 N VAL C 457 SHEET 1 AA9 2 ARG C 463 ILE C 465 0 SHEET 2 AA9 2 ILE C 468 SER C 470 -1 O SER C 470 N ARG C 463 SHEET 1 AB1 2 ARG D 463 ILE D 465 0 SHEET 2 AB1 2 ILE D 468 SER D 470 -1 O ILE D 468 N ILE D 465 SSBOND 1 CYS A 385 CYS D 385 1555 1555 2.03 SSBOND 2 CYS B 385 CYS C 385 1555 1555 2.04 SITE 1 AC1 5 HIS B 383 ARG B 386 HIS B 387 HOH B 708 SITE 2 AC1 5 LYS C 493 SITE 1 AC2 4 ASN B 326 LYS C 409 LYS C 453 ASP C 491 SITE 1 AC3 3 HIS D 383 ARG D 386 HIS D 387 CRYST1 56.005 62.306 65.307 90.12 72.74 86.39 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017856 -0.001127 -0.005575 0.00000 SCALE2 0.000000 0.016082 0.000350 0.00000 SCALE3 0.000000 0.000000 0.016039 0.00000