HEADER TRANSCRIPTION/DNA 09-OCT-20 7D8T TITLE MITF BHLHLZ COMPLEX WITH M-BOX DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*GP*GP*GP*AP*CP*AP*CP*AP*TP*GP*TP*TP*AP*CP*AP*G)-3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SYNTHESIZED M BOX DNA; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*TP*GP*TP*AP*AP*CP*AP*TP*GP*TP*GP*TP*CP*CP*CP*C)- COMPND 9 3'); COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: SYNTHESIZED M BOX DNA; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR,METHIONYL- COMPND 15 TRNA SYNTHETASE BETA SUBUNIT; COMPND 16 CHAIN: A, B; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 OTHER_DETAILS: FUSION PROTEIN OF MICROPHTHALMIA-ASSOCIATED COMPND 20 TRANSCRIPTION FACTOR AND METHIONYL-TRNA SYNTHETASE BETA SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS, AQUIFEX AEOLICUS VF5; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606, 224324; SOURCE 15 STRAIN: VF5; SOURCE 16 GENE: MITF, BHLHE32, METG', AQ_422; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.GUO,P.FANG,J.WANG REVDAT 3 29-NOV-23 7D8T 1 REMARK REVDAT 2 27-SEP-23 7D8T 1 JRNL REVDAT 1 13-OCT-21 7D8T 0 JRNL AUTH Z.LIU,K.CHEN,J.DAI,P.XU,W.SUN,W.LIU,Z.ZHAO,S.P.BENNETT,P.LI, JRNL AUTH 2 T.MA,Y.LIN,A.KAWAKAMI,J.YU,F.WANG,C.WANG,M.LI,P.CHASE, JRNL AUTH 3 P.HODDER,T.P.SPICER,L.SCAMPAVIA,C.CAO,L.PAN,J.DONG,Y.CHEN, JRNL AUTH 4 B.YU,M.GUO,P.FANG,D.E.FISHER,J.WANG JRNL TITL A UNIQUE HYPERDYNAMIC DIMER INTERFACE PERMITS SMALL MOLECULE JRNL TITL 2 PERTURBATION OF THE MELANOMA ONCOPROTEIN MITF FOR MELANOMA JRNL TITL 3 THERAPY. JRNL REF CELL RES. V. 33 55 2023 JRNL REFN ISSN 1001-0602 JRNL PMID 36588115 JRNL DOI 10.1038/S41422-022-00744-5 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 19815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.3692 - 3.2012 0.42 1247 65 0.2843 0.3818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3704 REMARK 3 ANGLE : 0.648 5139 REMARK 3 CHIRALITY : 0.044 613 REMARK 3 PLANARITY : 0.004 557 REMARK 3 DIHEDRAL : 17.477 2152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -58.4469 -35.8374 33.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.2571 T22: 0.8595 REMARK 3 T33: 0.6924 T12: 0.3359 REMARK 3 T13: -0.0395 T23: -0.3048 REMARK 3 L TENSOR REMARK 3 L11: 0.9253 L22: 0.4848 REMARK 3 L33: 0.3636 L12: 0.6834 REMARK 3 L13: 0.5925 L23: 0.3621 REMARK 3 S TENSOR REMARK 3 S11: 0.2797 S12: 0.1438 S13: -0.2233 REMARK 3 S21: 0.1901 S22: 0.1571 S23: -0.5226 REMARK 3 S31: -0.2833 S32: 0.2792 S33: -0.0446 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7D8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300018953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22309 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 120.734 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13300 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : 0.90100 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7D8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, TRIS-CL PH8.5, SODIUM REMARK 280 CITRATE., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 103.63000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.83081 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.38667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 103.63000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 59.83081 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.38667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 103.63000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 59.83081 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.38667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 103.63000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 59.83081 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.38667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 103.63000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 59.83081 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.38667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 103.63000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 59.83081 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.38667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 119.66162 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 108.77333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 119.66162 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 108.77333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 119.66162 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 108.77333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 119.66162 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.77333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 119.66162 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 108.77333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 119.66162 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 108.77333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 308 CE NZ REMARK 470 GLU A 309 CD OE1 OE2 REMARK 470 LYS A 312 CD CE NZ REMARK 470 ARG A 321 NE CZ NH1 NH2 REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 SER A 341 OG REMARK 470 ASP A 345 CG OD1 OD2 REMARK 470 MET A 346 CG SD CE REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 LYS A 379 CG CD CE NZ REMARK 470 LYS A 380 CE NZ REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 392 CG1 CG2 CD1 REMARK 470 GLN A 393 CG CD OE1 NE2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 LEU A 395 CG CD1 CD2 REMARK 470 ILE A 397 CG1 CG2 CD1 REMARK 470 GLU A 398 CG CD OE1 OE2 REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 SER A 419 OG REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 LYS A 421 CE NZ REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 LYS A 464 CE NZ REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 LYS A 493 CE NZ REMARK 470 GLU A 503 CG CD OE1 OE2 REMARK 470 SER B 305 OG REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 LYS B 308 CG CD CE NZ REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 312 CG CD CE NZ REMARK 470 LYS B 313 CG CD CE NZ REMARK 470 ARG B 322 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 329 CG OD1 OD2 REMARK 470 LYS B 332 CE NZ REMARK 470 LYS B 340 CG CD CE NZ REMARK 470 SER B 341 OG REMARK 470 ASN B 342 CG OD1 ND2 REMARK 470 ASP B 343 CG OD1 OD2 REMARK 470 ASP B 345 CG OD1 OD2 REMARK 470 MET B 346 CG SD CE REMARK 470 ARG B 347 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 372 CG CD CE NZ REMARK 470 GLU B 375 CG CD OE1 OE2 REMARK 470 LYS B 379 CE NZ REMARK 470 GLU B 417 CG CD OE1 OE2 REMARK 470 GLU B 420 CG CD OE1 OE2 REMARK 470 LYS B 421 CG CD CE NZ REMARK 470 LEU B 422 CG CD1 CD2 REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 GLU B 432 CG CD OE1 OE2 REMARK 470 GLU B 433 CG CD OE1 OE2 REMARK 470 ARG B 434 CG CD NE CZ NH1 NH2 REMARK 470 THR B 435 OG1 CG2 REMARK 470 LYS B 442 CG CD CE NZ REMARK 470 LYS B 461 CG CD CE NZ REMARK 470 ARG B 463 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 464 CG CD CE NZ REMARK 470 ILE B 465 CG1 CG2 CD1 REMARK 470 GLN B 471 CG CD OE1 NE2 REMARK 470 GLU B 481 CG CD OE1 OE2 REMARK 470 LYS B 493 CG CD CE NZ REMARK 470 GLU B 503 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 4 O4' DA D 4 C4' -0.089 REMARK 500 DA D 5 C2' DA D 5 C1' -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 399 -8.07 75.18 REMARK 500 SER B 341 -1.29 66.16 REMARK 500 PRO B 344 71.45 -66.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7D8S RELATED DB: PDB DBREF 7D8T C 1 16 PDB 7D8T 7D8T 1 16 DBREF 7D8T D 1 16 PDB 7D8T 7D8T 1 16 DBREF 7D8T A 306 395 UNP O75030 MITF_HUMAN 306 395 DBREF 7D8T A 396 499 UNP O66738 O66738_AQUAE 8 111 DBREF 7D8T B 306 395 UNP O75030 MITF_HUMAN 306 395 DBREF 7D8T B 396 499 UNP O66738 O66738_AQUAE 8 111 SEQADV 7D8T SER A 305 UNP O75030 EXPRESSION TAG SEQADV 7D8T CYS A 385 UNP O75030 ASN 385 ENGINEERED MUTATION SEQADV 7D8T ALA A 500 UNP O66738 EXPRESSION TAG SEQADV 7D8T ALA A 501 UNP O66738 EXPRESSION TAG SEQADV 7D8T LEU A 502 UNP O66738 EXPRESSION TAG SEQADV 7D8T GLU A 503 UNP O66738 EXPRESSION TAG SEQADV 7D8T SER B 305 UNP O75030 EXPRESSION TAG SEQADV 7D8T CYS B 385 UNP O75030 ASN 385 ENGINEERED MUTATION SEQADV 7D8T ALA B 500 UNP O66738 EXPRESSION TAG SEQADV 7D8T ALA B 501 UNP O66738 EXPRESSION TAG SEQADV 7D8T LEU B 502 UNP O66738 EXPRESSION TAG SEQADV 7D8T GLU B 503 UNP O66738 EXPRESSION TAG SEQRES 1 C 16 DG DG DG DA DC DA DC DA DT DG DT DT DA SEQRES 2 C 16 DC DA DG SEQRES 1 D 16 DT DG DT DA DA DC DA DT DG DT DG DT DC SEQRES 2 D 16 DC DC DC SEQRES 1 A 199 SER LEU ALA LYS GLU ARG GLN LYS LYS ASP ASN HIS ASN SEQRES 2 A 199 LEU ILE GLU ARG ARG ARG ARG PHE ASN ILE ASN ASP ARG SEQRES 3 A 199 ILE LYS GLU LEU GLY THR LEU ILE PRO LYS SER ASN ASP SEQRES 4 A 199 PRO ASP MET ARG TRP ASN LYS GLY THR ILE LEU LYS ALA SEQRES 5 A 199 SER VAL ASP TYR ILE ARG LYS LEU GLN ARG GLU GLN GLN SEQRES 6 A 199 ARG ALA LYS GLU LEU GLU ASN ARG GLN LYS LYS LEU GLU SEQRES 7 A 199 HIS ALA CYS ARG HIS LEU LEU LEU ARG ILE GLN GLU LEU SEQRES 8 A 199 GLY ILE GLU ASP PHE LEU LYS VAL ASP LEU ARG VAL ALA SEQRES 9 A 199 LYS VAL LEU SER ALA GLU ARG VAL GLU GLY SER GLU LYS SEQRES 10 A 199 LEU LEU LYS LEU THR LEU SER LEU GLY ASP GLU GLU ARG SEQRES 11 A 199 THR VAL VAL ALA GLY ILE ALA LYS TYR TYR THR PRO GLU SEQRES 12 A 199 GLU LEU VAL GLY LYS LYS ILE VAL ILE VAL ALA ASN LEU SEQRES 13 A 199 LYS PRO ARG LYS ILE PHE GLY ILE GLU SER GLN GLY MET SEQRES 14 A 199 ILE LEU ALA ALA SER ASP GLY GLU ASN LEU SER VAL ILE SEQRES 15 A 199 VAL PRO ASP ARG ASP VAL LYS GLU GLY ALA LYS LEU SER SEQRES 16 A 199 ALA ALA LEU GLU SEQRES 1 B 199 SER LEU ALA LYS GLU ARG GLN LYS LYS ASP ASN HIS ASN SEQRES 2 B 199 LEU ILE GLU ARG ARG ARG ARG PHE ASN ILE ASN ASP ARG SEQRES 3 B 199 ILE LYS GLU LEU GLY THR LEU ILE PRO LYS SER ASN ASP SEQRES 4 B 199 PRO ASP MET ARG TRP ASN LYS GLY THR ILE LEU LYS ALA SEQRES 5 B 199 SER VAL ASP TYR ILE ARG LYS LEU GLN ARG GLU GLN GLN SEQRES 6 B 199 ARG ALA LYS GLU LEU GLU ASN ARG GLN LYS LYS LEU GLU SEQRES 7 B 199 HIS ALA CYS ARG HIS LEU LEU LEU ARG ILE GLN GLU LEU SEQRES 8 B 199 GLY ILE GLU ASP PHE LEU LYS VAL ASP LEU ARG VAL ALA SEQRES 9 B 199 LYS VAL LEU SER ALA GLU ARG VAL GLU GLY SER GLU LYS SEQRES 10 B 199 LEU LEU LYS LEU THR LEU SER LEU GLY ASP GLU GLU ARG SEQRES 11 B 199 THR VAL VAL ALA GLY ILE ALA LYS TYR TYR THR PRO GLU SEQRES 12 B 199 GLU LEU VAL GLY LYS LYS ILE VAL ILE VAL ALA ASN LEU SEQRES 13 B 199 LYS PRO ARG LYS ILE PHE GLY ILE GLU SER GLN GLY MET SEQRES 14 B 199 ILE LEU ALA ALA SER ASP GLY GLU ASN LEU SER VAL ILE SEQRES 15 B 199 VAL PRO ASP ARG ASP VAL LYS GLU GLY ALA LYS LEU SER SEQRES 16 B 199 ALA ALA LEU GLU HELIX 1 AA1 SER A 305 ILE A 338 1 34 HELIX 2 AA2 ASN A 349 LEU A 390 1 42 HELIX 3 AA3 THR A 445 VAL A 450 1 6 HELIX 4 AA4 LEU B 306 ILE B 338 1 33 HELIX 5 AA5 ASN B 349 GLU B 367 1 19 HELIX 6 AA6 GLU B 367 LEU B 389 1 23 HELIX 7 AA7 LEU B 390 ILE B 392 5 3 HELIX 8 AA8 GLY B 396 LYS B 402 1 7 HELIX 9 AA9 THR B 445 LEU B 449 5 5 SHEET 1 AA1 5 GLU A 433 ALA A 438 0 SHEET 2 AA1 5 LEU A 423 SER A 428 -1 N LEU A 425 O VAL A 436 SHEET 3 AA1 5 LEU A 405 ARG A 415 -1 N LYS A 409 O SER A 428 SHEET 4 AA1 5 LYS A 453 VAL A 457 -1 O ILE A 454 N ALA A 408 SHEET 5 AA1 5 MET A 473 ILE A 474 -1 O MET A 473 N VAL A 457 SHEET 1 AA2 4 GLU A 433 ALA A 438 0 SHEET 2 AA2 4 LEU A 423 SER A 428 -1 N LEU A 425 O VAL A 436 SHEET 3 AA2 4 LEU A 405 ARG A 415 -1 N LYS A 409 O SER A 428 SHEET 4 AA2 4 ALA A 496 LYS A 497 -1 O ALA A 496 N VAL A 407 SHEET 1 AA3 2 ARG A 463 ILE A 465 0 SHEET 2 AA3 2 ILE A 468 SER A 470 -1 O ILE A 468 N ILE A 465 SHEET 1 AA4 2 ALA A 476 SER A 478 0 SHEET 2 AA4 2 LEU A 483 VAL A 485 -1 O SER A 484 N ALA A 477 SHEET 1 AA5 5 GLU B 433 ALA B 438 0 SHEET 2 AA5 5 LEU B 423 SER B 428 -1 N LEU B 427 O ARG B 434 SHEET 3 AA5 5 LEU B 405 VAL B 410 -1 N LYS B 409 O SER B 428 SHEET 4 AA5 5 LYS B 453 VAL B 457 -1 O ILE B 454 N ALA B 408 SHEET 5 AA5 5 MET B 473 ILE B 474 -1 O MET B 473 N VAL B 457 SHEET 1 AA6 2 ARG B 463 ILE B 465 0 SHEET 2 AA6 2 ILE B 468 SER B 470 -1 O ILE B 468 N ILE B 465 SHEET 1 AA7 2 ALA B 476 SER B 478 0 SHEET 2 AA7 2 LEU B 483 VAL B 485 -1 O SER B 484 N ALA B 477 SSBOND 1 CYS A 385 CYS B 385 1555 10455 2.04 CRYST1 207.260 207.260 163.160 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004825 0.002786 0.000000 0.00000 SCALE2 0.000000 0.005571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006129 0.00000