HEADER HYDROLASE 19-OCT-20 7DB5 TITLE CRYSTAL STRUCTURE OF ALPHA-L-FUCOSIDASE FROM VIBRIO SP. STRAIN EJY3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-L-FUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO SP. EJY3; SOURCE 3 ORGANISM_TAXID: 1116375; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.HONG,K.-J.KIM REVDAT 2 07-APR-21 7DB5 1 JRNL REVDAT 1 24-MAR-21 7DB5 0 JRNL AUTH H.HONG,D.H.KIM,H.SEO,K.H.KIM,K.J.KIM JRNL TITL DUAL ALPHA-1,4- AND BETA-1,4-GLYCOSIDASE ACTIVITIES BY THE JRNL TITL 2 NOVEL CARBOHYDRATE-BINDING MODULE IN ALPHA-L-FUCOSIDASE FROM JRNL TITL 3 VIBRIO SP. STRAIN EJY3. JRNL REF J.AGRIC.FOOD CHEM. V. 69 3380 2021 JRNL REFN ESSN 1520-5118 JRNL PMID 33705122 JRNL DOI 10.1021/ACS.JAFC.0C08199 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 64319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3393 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4793 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4969 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4319 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6759 ; 1.837 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10066 ; 1.474 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 593 ; 7.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;33.798 ;23.344 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 778 ;13.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.523 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5628 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1065 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7DB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300019056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67820 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM DIHYDROGEN PHOSPHATE, POTASSIUM REMARK 280 HYDROGEN PHOSPHATE, ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.35600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.35600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.35600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 GLN A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ASP A 21 REMARK 465 LEU A 608 REMARK 465 GLU A 609 REMARK 465 HIS A 610 REMARK 465 HIS A 611 REMARK 465 HIS A 612 REMARK 465 HIS A 613 REMARK 465 HIS A 614 REMARK 465 HIS A 615 REMARK 465 HIS A 616 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 404 OD1 ASN A 464 1.76 REMARK 500 ND1 HIS A 272 O3 GOL A 702 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 456 CD GLU A 456 OE2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 293 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 41 -56.40 74.85 REMARK 500 LEU A 56 -115.80 -121.51 REMARK 500 MSE A 124 32.56 -94.57 REMARK 500 LYS A 198 -57.92 -122.90 REMARK 500 TRP A 266 160.47 177.30 REMARK 500 ASN A 274 -42.50 71.25 REMARK 500 ASN A 293 -159.50 -144.54 REMARK 500 TRP A 296 -90.62 -99.08 REMARK 500 ASN A 304 52.42 -96.79 REMARK 500 VAL A 359 -61.60 -131.54 REMARK 500 GLN A 441 71.15 -104.56 REMARK 500 MSE A 514 -174.75 71.90 REMARK 500 ASP A 518 62.00 -155.68 REMARK 500 GLU A 579 0.07 82.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DB5 A 1 616 PDB 7DB5 7DB5 1 616 SEQRES 1 A 616 MSE THR LYS PRO THR ALA GLY GLU LEU THR GLY THR SER SEQRES 2 A 616 SER GLN ALA THR SER GLN LEU ASP ASN ARG ASN ALA PHE SEQRES 3 A 616 THR GLY VAL SER LYS GLN GLY LEU ASN ARG TRP LYS LYS SEQRES 4 A 616 ASN THR PHE GLY MSE PHE ILE HIS TRP GLY LEU TYR CYS SEQRES 5 A 616 HIS ARG ASP LEU ALA GLY TYR TYR GLN GLY GLN TYR TYR SEQRES 6 A 616 ASP ILE ILE SER GLU TRP LEU PRO HIS PHE ALA ARG ILE SEQRES 7 A 616 PRO MSE ARG ASP TYR LYS GLU TYR ALA SER ASP PHE ASN SEQRES 8 A 616 PRO SER GLU PHE ASP ALA ASP GLN VAL THR ALA LEU ALA SEQRES 9 A 616 LYS THR ALA GLY MSE ASN TYR MSE VAL VAL THR ALA LYS SEQRES 10 A 616 HIS HIS ASP GLY PHE ALA MSE TYR HIS SER PRO SER HIS SEQRES 11 A 616 PRO PHE ASN ILE THR ASP ALA THR PRO PHE LYS ARG ASP SEQRES 12 A 616 PRO VAL ALA GLU LEU SER GLN SER CYS ARG HIS LYS ASP SEQRES 13 A 616 LEU ASP PHE GLY LEU TYR TYR SER HIS VAL ILE ASP TRP SEQRES 14 A 616 GLU ASN GLU ASN ALA VAL SER LYS ALA PRO ASN ASP TRP SEQRES 15 A 616 ASP PHE ASN PRO ASP GLN ALA ASN TYR GLN GLU TYR TRP SEQRES 16 A 616 ASN ASN LYS CYS LEU PRO GLN VAL ASN GLU LEU LEU GLU SEQRES 17 A 616 GLN TYR GLY ASP LEU CYS SER LEU TRP PHE ASP MSE GLY SEQRES 18 A 616 GLY PHE ASP VAL GLN GLU GLU ALA ASP HIS VAL ARG ARG SEQRES 19 A 616 ILE GLY GLU LEU MSE ALA LEU ILE ARG LYS LYS GLN PRO SEQRES 20 A 616 ASP ALA VAL VAL ASN SER ARG VAL THR ALA PRO GLU CYS SEQRES 21 A 616 GLU TYR GLN LEU ASP TRP ASP ILE LYS THR GLY HIS ASP SEQRES 22 A 616 ASN TYR MSE GLU PRO LEU TYR ILE LYS PRO TYR TYR TRP SEQRES 23 A 616 GLU GLY ILE ALA THR SER ASN ASP ASN TRP GLY TYR SER SEQRES 24 A 616 ARG ASN ASP ASN ASN THR LYS SER SER LYS ASP LEU ILE SEQRES 25 A 616 ASN GLN LEU CYS SER VAL VAL SER ARG GLY GLY ASN PHE SEQRES 26 A 616 LEU LEU ASN ILE THR LEU ASP HIS ASN GLY ARG ILE PRO SEQRES 27 A 616 GLN SER LEU VAL ARG LEU LEU SER GLU ILE GLY GLN TRP SEQRES 28 A 616 MSE GLN VAL ASN GLN GLU ALA VAL ILE ASP THR GLU ALA SEQRES 29 A 616 THR PRO LEU GLN THR GLY PHE ASN TRP GLY VAL VAL THR SEQRES 30 A 616 HIS ARG PRO ALA THR ASN LYS LEU TYR LEU HIS VAL GLN SEQRES 31 A 616 ARG GLN PRO GLU GLN ASN VAL ILE CYS LEU HIS SER LEU SEQRES 32 A 616 ASN ASN ARG ILE LYS GLN VAL ARG LEU LEU ASP ASN GLN SEQRES 33 A 616 ILE LYS GLY HIS VAL SER TYR LEU GLN LYS THR HIS THR SEQRES 34 A 616 ASP THR GLY ILE THR ALA SER THR LEU ASN LEU GLN LEU SEQRES 35 A 616 GLY HIS ASN TYR ASP ARG MSE PRO LEU VAL ILE GLU LEU SEQRES 36 A 616 GLU TYR ASP GLY GLU LEU ASP ILE ASN PRO ILE VAL HIS SEQRES 37 A 616 GLN ASP ARG LEU ALA LYS VAL ARG LEU ASP THR LEU ASN SEQRES 38 A 616 ILE ALA HIS PHE ASP PRO GLU LYS LEU THR TYR ARG TRP SEQRES 39 A 616 THR PHE GLN ILE GLN SER PRO GLY ARG PHE ALA LEU ASP SEQRES 40 A 616 LEU VAL SER LEU GLU THR MSE HIS HIS LYS ASP PRO GLN SEQRES 41 A 616 TRP VAL HIS ASN GLY LYS THR GLY ARG ILE SER CYS GLY SEQRES 42 A 616 GLY GLN SER TRP GLU PHE GLU LEU ASN LEU ASP LYS THR SEQRES 43 A 616 ASP THR ASN ASP ALA GLN VAL PRO TRP LYS ASN ILE HIS SEQRES 44 A 616 SER ARG LEU GLY GLU LEU HIS PHE PRO GLN ALA GLY GLU SEQRES 45 A 616 TYR THR LEU GLU PHE SER GLU LEU PRO LEU ALA ILE ASP SEQRES 46 A 616 GLN SER GLU LYS TYR GLY GLN ASP TYR ILE ASN LEU GLU SEQRES 47 A 616 TYR LEU GLN LEU GLY PRO ARG LEU ALA LEU GLU HIS HIS SEQRES 48 A 616 HIS HIS HIS HIS HIS HET MSE A 44 8 HET MSE A 80 8 HET MSE A 109 8 HET MSE A 112 8 HET MSE A 124 8 HET MSE A 220 8 HET MSE A 239 8 HET MSE A 276 8 HET MSE A 352 8 HET MSE A 449 8 HET MSE A 514 8 HET GOL A 701 6 HET GOL A 702 6 HET GOL A 703 6 HET PO4 A 704 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *305(H2 O) HELIX 1 AA1 ASN A 22 PHE A 26 5 5 HELIX 2 AA2 SER A 30 THR A 41 1 12 HELIX 3 AA3 GLY A 49 HIS A 53 5 5 HELIX 4 AA4 ILE A 68 GLU A 70 5 3 HELIX 5 AA5 TRP A 71 ALA A 76 1 6 HELIX 6 AA6 PRO A 79 TYR A 86 1 8 HELIX 7 AA7 ALA A 87 PHE A 90 5 4 HELIX 8 AA8 ASP A 96 ALA A 107 1 12 HELIX 9 AA9 ASN A 133 THR A 138 1 6 HELIX 10 AB1 ASP A 143 LYS A 155 1 13 HELIX 11 AB2 ASN A 185 ALA A 189 5 5 HELIX 12 AB3 ASN A 190 LYS A 198 1 9 HELIX 13 AB4 LYS A 198 TYR A 210 1 13 HELIX 14 AB5 MSE A 220 ASP A 224 5 5 HELIX 15 AB6 GLU A 227 GLN A 246 1 20 HELIX 16 AB7 SER A 253 THR A 256 5 4 HELIX 17 AB8 ALA A 257 LEU A 264 5 8 HELIX 18 AB9 SER A 307 GLY A 322 1 16 HELIX 19 AC1 PRO A 338 GLN A 356 1 19 HELIX 20 AC2 GLU A 357 VAL A 359 5 3 HELIX 21 AC3 PRO A 380 THR A 382 5 3 HELIX 22 AC4 PRO A 393 GLN A 395 5 3 SHEET 1 AA1 8 VAL A 250 VAL A 251 0 SHEET 2 AA1 8 SER A 215 TRP A 217 1 N LEU A 216 O VAL A 250 SHEET 3 AA1 8 ASP A 158 TYR A 163 1 N LEU A 161 O TRP A 217 SHEET 4 AA1 8 TYR A 111 LYS A 117 1 N ALA A 116 O TYR A 162 SHEET 5 AA1 8 PHE A 42 ILE A 46 1 N MSE A 44 O TYR A 111 SHEET 6 AA1 8 ASN A 324 ILE A 329 1 O ILE A 329 N PHE A 45 SHEET 7 AA1 8 TRP A 286 THR A 291 1 N GLY A 288 O ASN A 324 SHEET 8 AA1 8 LYS A 269 ASP A 273 1 N GLY A 271 O GLU A 287 SHEET 1 AA2 2 TYR A 59 TYR A 60 0 SHEET 2 AA2 2 GLN A 63 TYR A 64 -1 O GLN A 63 N TYR A 60 SHEET 1 AA3 4 GLY A 374 ARG A 379 0 SHEET 2 AA3 4 LYS A 384 VAL A 389 -1 O LYS A 384 N ARG A 379 SHEET 3 AA3 4 LEU A 451 TYR A 457 -1 O LEU A 455 N LEU A 385 SHEET 4 AA3 4 ILE A 407 LEU A 412 -1 N ARG A 411 O GLU A 454 SHEET 1 AA4 3 VAL A 397 LEU A 400 0 SHEET 2 AA4 3 THR A 434 LEU A 442 -1 O SER A 436 N LEU A 400 SHEET 3 AA4 3 GLY A 419 THR A 427 -1 N HIS A 420 O GLN A 441 SHEET 1 AA5 5 VAL A 475 ASP A 478 0 SHEET 2 AA5 5 ILE A 595 GLY A 603 -1 O LEU A 600 N LEU A 477 SHEET 3 AA5 5 GLY A 502 LEU A 511 -1 N VAL A 509 O GLU A 598 SHEET 4 AA5 5 ASN A 557 PHE A 567 -1 O PHE A 567 N GLY A 502 SHEET 5 AA5 5 LYS A 545 ASP A 547 -1 N LYS A 545 O HIS A 559 SHEET 1 AA6 3 VAL A 475 ASP A 478 0 SHEET 2 AA6 3 ILE A 595 GLY A 603 -1 O LEU A 600 N LEU A 477 SHEET 3 AA6 3 LEU A 582 ALA A 583 1 N ALA A 583 O ILE A 595 SHEET 1 AA7 5 HIS A 484 ASP A 486 0 SHEET 2 AA7 5 THR A 491 ILE A 498 -1 O ARG A 493 N HIS A 484 SHEET 3 AA7 5 GLY A 571 SER A 578 -1 O LEU A 575 N TRP A 494 SHEET 4 AA7 5 THR A 527 CYS A 532 -1 N SER A 531 O GLU A 576 SHEET 5 AA7 5 GLN A 535 GLU A 540 -1 O GLN A 535 N CYS A 532 LINK C GLY A 43 N MSE A 44 1555 1555 1.34 LINK C MSE A 44 N PHE A 45 1555 1555 1.34 LINK C PRO A 79 N MSE A 80 1555 1555 1.34 LINK C MSE A 80 N ARG A 81 1555 1555 1.33 LINK C GLY A 108 N MSE A 109 1555 1555 1.35 LINK C MSE A 109 N ASN A 110 1555 1555 1.32 LINK C TYR A 111 N MSE A 112 1555 1555 1.34 LINK C MSE A 112 N VAL A 113 1555 1555 1.33 LINK C ALA A 123 N MSE A 124 1555 1555 1.35 LINK C MSE A 124 N TYR A 125 1555 1555 1.33 LINK C ASP A 219 N MSE A 220 1555 1555 1.35 LINK C MSE A 220 N GLY A 221 1555 1555 1.35 LINK C LEU A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N ALA A 240 1555 1555 1.36 LINK C TYR A 275 N MSE A 276 1555 1555 1.33 LINK C MSE A 276 N GLU A 277 1555 1555 1.34 LINK C TRP A 351 N MSE A 352 1555 1555 1.33 LINK C MSE A 352 N GLN A 353 1555 1555 1.33 LINK C ARG A 448 N MSE A 449 1555 1555 1.33 LINK C MSE A 449 N PRO A 450 1555 1555 1.34 LINK C THR A 513 N MSE A 514 1555 1555 1.34 LINK C MSE A 514 N HIS A 515 1555 1555 1.33 CISPEP 1 VAL A 553 PRO A 554 0 3.32 CRYST1 163.916 163.916 58.712 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006101 0.003522 0.000000 0.00000 SCALE2 0.000000 0.007044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017032 0.00000