HEADER TRANSFERASE 26-OCT-20 7DCF TITLE CRYSTAL STRUCTURE OF EHMT2 SET DOMAIN IN COMPLEX WITH COMPOUND 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE EHMT2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EUCHROMATIC HISTONE-LYSINE N-METHYLTRANSFERASE 2,HLA-B- COMPND 5 ASSOCIATED TRANSCRIPT 8,HISTONE H3-K9 METHYLTRANSFERASE 3,H3-K9- COMPND 6 HMTASE 3,LYSINE N-METHYLTRANSFERASE 1C,PROTEIN G9A; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EHMT2, BAT8, C6ORF30, G9A, KMT1C, NG36; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-SMALL MOLECULE INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SUZUKI,K.KATAYAMA REVDAT 2 27-MAR-24 7DCF 1 REMARK REVDAT 1 10-FEB-21 7DCF 0 JRNL AUTH K.KATAYAMA,K.ISHII,H.TERASHIMA,E.TSUDA,M.SUZUKI,K.YOTSUMOTO, JRNL AUTH 2 K.HIRAMOTO,I.YASUMATSU,M.TORIHATA,T.ISHIYAMA,T.MUTO, JRNL AUTH 3 T.KATAGIRI JRNL TITL DISCOVERY OF DS79932728: A POTENT, ORALLY AVAILABLE G9A/GLP JRNL TITL 2 INHIBITOR FOR TREATING BETA-THALASSEMIA AND SICKLE CELL JRNL TITL 3 DISEASE. JRNL REF ACS MED.CHEM.LETT. V. 12 121 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 33488973 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00572 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 203 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : 1.23000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.92000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.095 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4326 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5874 ; 1.567 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 6.741 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;30.535 ;21.680 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;14.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;18.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3414 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7DCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1300019148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54056 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO 39.33C REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NAOAC, PH 7, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.36500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 911 REMARK 465 SER A 912 REMARK 465 ASN A 913 REMARK 465 ARG A 914 REMARK 465 ALA A 915 REMARK 465 ILE A 916 REMARK 465 ARG A 917 REMARK 465 GLY A 988 REMARK 465 GLN A 989 REMARK 465 LEU A 990 REMARK 465 SER A 991 REMARK 465 ILE A 992 REMARK 465 ARG A 993 REMARK 465 ASP A 1093 REMARK 465 GLY A 1094 REMARK 465 GLN A 1186 REMARK 465 SER A 1187 REMARK 465 ARG A 1188 REMARK 465 LEU A 1189 REMARK 465 ALA A 1190 REMARK 465 ARG A 1191 REMARK 465 LEU A 1192 REMARK 465 ASP A 1193 REMARK 465 GLY B 911 REMARK 465 SER B 912 REMARK 465 ASN B 913 REMARK 465 ARG B 914 REMARK 465 ALA B 915 REMARK 465 ILE B 916 REMARK 465 ARG B 917 REMARK 465 THR B 918 REMARK 465 GLU B 919 REMARK 465 ASP B 999 REMARK 465 GLY B 1000 REMARK 465 LYS B 1008 REMARK 465 ILE B 1009 REMARK 465 ASP B 1093 REMARK 465 GLY B 1094 REMARK 465 GLU B 1185 REMARK 465 GLN B 1186 REMARK 465 SER B 1187 REMARK 465 ARG B 1188 REMARK 465 LEU B 1189 REMARK 465 ALA B 1190 REMARK 465 ARG B 1191 REMARK 465 LEU B 1192 REMARK 465 ASP B 1193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 920 CG CD CE NZ REMARK 470 ILE A 921 CG1 CG2 CD1 REMARK 470 HIS A 970 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 983 OG REMARK 470 LEU A 986 CG CD1 CD2 REMARK 470 CYS A 994 SG REMARK 470 LYS A1008 CE NZ REMARK 470 ASN A1026 CG OD1 ND2 REMARK 470 LYS A1047 CE NZ REMARK 470 LYS A1092 CG CD CE NZ REMARK 470 GLU A1095 CG CD OE1 OE2 REMARK 470 GLU A1173 OE1 OE2 REMARK 470 LYS A1174 CD CE NZ REMARK 470 LYS A1176 CE NZ REMARK 470 LEU A1184 CG CD1 CD2 REMARK 470 GLU A1185 CG CD OE1 OE2 REMARK 470 LYS B 920 CG CD CE NZ REMARK 470 ILE B 921 CG1 CG2 CD1 REMARK 470 ILE B 922 CG1 CG2 CD1 REMARK 470 ARG B 928 CZ NH1 NH2 REMARK 470 ASP B 997 CG OD1 OD2 REMARK 470 LYS B 998 CG CD CE NZ REMARK 470 GLN B1004 CG CD OE1 NE2 REMARK 470 ASN B1007 CG OD1 ND2 REMARK 470 GLU B1010 CG CD OE1 OE2 REMARK 470 ARG B1039 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1047 CE NZ REMARK 470 ASN B1091 CG OD1 ND2 REMARK 470 LYS B1092 CG CD CE NZ REMARK 470 ARG B1132 CZ NH1 NH2 REMARK 470 LYS B1164 CD CE NZ REMARK 470 GLU B1173 OE1 OE2 REMARK 470 LYS B1174 CG CD CE NZ REMARK 470 LYS B1176 CE NZ REMARK 470 LEU B1184 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 1142 OE2 GLU A 1148 2.09 REMARK 500 O HOH A 1623 O HOH A 1724 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG B 924 NE ARG B 1132 2646 1.98 REMARK 500 O HOH A 1718 O HOH B 1703 2646 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B1070 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG B1080 CG - CD - NE ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 949 41.38 -97.58 REMARK 500 THR A 959 -71.67 -106.52 REMARK 500 ASN A 963 59.96 -90.10 REMARK 500 ASP A 978 -138.97 -96.72 REMARK 500 ILE A1064 -62.92 -104.16 REMARK 500 ASN A1091 -69.58 -142.68 REMARK 500 ASN A1106 -156.31 -112.51 REMARK 500 ASP A1116 63.64 -107.42 REMARK 500 MET A1126 -93.17 -124.71 REMARK 500 MET A1126 -95.00 -123.27 REMARK 500 CYS B 923 126.44 177.09 REMARK 500 SER B 960 -150.27 -109.29 REMARK 500 ASP B 978 -148.58 -99.64 REMARK 500 ASP B 997 -93.19 -80.15 REMARK 500 ASN B1026 36.98 -99.89 REMARK 500 ASN B1029 51.77 -101.31 REMARK 500 ARG B1030 34.22 -142.59 REMARK 500 ILE B1064 -65.49 -103.49 REMARK 500 ASN B1091 -74.62 -98.75 REMARK 500 ASN B1106 -161.79 -112.16 REMARK 500 ASP B1116 67.80 -105.57 REMARK 500 MET B1126 -91.16 -126.97 REMARK 500 MET B1126 -91.13 -126.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 974 SG REMARK 620 2 CYS A 987 SG 108.3 REMARK 620 3 CYS A1017 SG 111.2 110.9 REMARK 620 4 CYS A1021 SG 111.0 94.8 119.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 974 SG REMARK 620 2 CYS A 976 SG 106.0 REMARK 620 3 CYS A 980 SG 110.5 105.8 REMARK 620 4 CYS A 985 SG 110.5 109.9 113.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 980 SG REMARK 620 2 CYS A1017 SG 109.2 REMARK 620 3 CYS A1023 SG 102.9 108.8 REMARK 620 4 CYS A1027 SG 112.2 108.3 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1115 SG REMARK 620 2 CYS A1168 SG 114.8 REMARK 620 3 CYS A1170 SG 109.0 109.7 REMARK 620 4 CYS A1175 SG 102.1 105.7 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 974 SG REMARK 620 2 CYS B 987 SG 113.1 REMARK 620 3 CYS B1017 SG 105.9 117.2 REMARK 620 4 CYS B1021 SG 105.5 98.6 116.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 974 SG REMARK 620 2 CYS B 976 SG 104.3 REMARK 620 3 CYS B 980 SG 105.6 107.0 REMARK 620 4 CYS B 985 SG 111.3 109.7 118.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 980 SG REMARK 620 2 CYS B1017 SG 111.2 REMARK 620 3 CYS B1023 SG 104.9 107.0 REMARK 620 4 CYS B1027 SG 113.9 104.7 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1115 SG REMARK 620 2 CYS B1168 SG 111.8 REMARK 620 3 CYS B1170 SG 111.1 110.8 REMARK 620 4 CYS B1175 SG 103.1 106.6 113.2 REMARK 620 N 1 2 3 DBREF 7DCF A 913 1193 UNP Q96KQ7 EHMT2_HUMAN 913 1193 DBREF 7DCF B 913 1193 UNP Q96KQ7 EHMT2_HUMAN 913 1193 SEQADV 7DCF GLY A 911 UNP Q96KQ7 EXPRESSION TAG SEQADV 7DCF SER A 912 UNP Q96KQ7 EXPRESSION TAG SEQADV 7DCF GLY B 911 UNP Q96KQ7 EXPRESSION TAG SEQADV 7DCF SER B 912 UNP Q96KQ7 EXPRESSION TAG SEQRES 1 A 283 GLY SER ASN ARG ALA ILE ARG THR GLU LYS ILE ILE CYS SEQRES 2 A 283 ARG ASP VAL ALA ARG GLY TYR GLU ASN VAL PRO ILE PRO SEQRES 3 A 283 CYS VAL ASN GLY VAL ASP GLY GLU PRO CYS PRO GLU ASP SEQRES 4 A 283 TYR LYS TYR ILE SER GLU ASN CYS GLU THR SER THR MET SEQRES 5 A 283 ASN ILE ASP ARG ASN ILE THR HIS LEU GLN HIS CYS THR SEQRES 6 A 283 CYS VAL ASP ASP CYS SER SER SER ASN CYS LEU CYS GLY SEQRES 7 A 283 GLN LEU SER ILE ARG CYS TRP TYR ASP LYS ASP GLY ARG SEQRES 8 A 283 LEU LEU GLN GLU PHE ASN LYS ILE GLU PRO PRO LEU ILE SEQRES 9 A 283 PHE GLU CYS ASN GLN ALA CYS SER CYS TRP ARG ASN CYS SEQRES 10 A 283 LYS ASN ARG VAL VAL GLN SER GLY ILE LYS VAL ARG LEU SEQRES 11 A 283 GLN LEU TYR ARG THR ALA LYS MET GLY TRP GLY VAL ARG SEQRES 12 A 283 ALA LEU GLN THR ILE PRO GLN GLY THR PHE ILE CYS GLU SEQRES 13 A 283 TYR VAL GLY GLU LEU ILE SER ASP ALA GLU ALA ASP VAL SEQRES 14 A 283 ARG GLU ASP ASP SER TYR LEU PHE ASP LEU ASP ASN LYS SEQRES 15 A 283 ASP GLY GLU VAL TYR CYS ILE ASP ALA ARG TYR TYR GLY SEQRES 16 A 283 ASN ILE SER ARG PHE ILE ASN HIS LEU CYS ASP PRO ASN SEQRES 17 A 283 ILE ILE PRO VAL ARG VAL PHE MET LEU HIS GLN ASP LEU SEQRES 18 A 283 ARG PHE PRO ARG ILE ALA PHE PHE SER SER ARG ASP ILE SEQRES 19 A 283 ARG THR GLY GLU GLU LEU GLY PHE ASP TYR GLY ASP ARG SEQRES 20 A 283 PHE TRP ASP ILE LYS SER LYS TYR PHE THR CYS GLN CYS SEQRES 21 A 283 GLY SER GLU LYS CYS LYS HIS SER ALA GLU ALA ILE ALA SEQRES 22 A 283 LEU GLU GLN SER ARG LEU ALA ARG LEU ASP SEQRES 1 B 283 GLY SER ASN ARG ALA ILE ARG THR GLU LYS ILE ILE CYS SEQRES 2 B 283 ARG ASP VAL ALA ARG GLY TYR GLU ASN VAL PRO ILE PRO SEQRES 3 B 283 CYS VAL ASN GLY VAL ASP GLY GLU PRO CYS PRO GLU ASP SEQRES 4 B 283 TYR LYS TYR ILE SER GLU ASN CYS GLU THR SER THR MET SEQRES 5 B 283 ASN ILE ASP ARG ASN ILE THR HIS LEU GLN HIS CYS THR SEQRES 6 B 283 CYS VAL ASP ASP CYS SER SER SER ASN CYS LEU CYS GLY SEQRES 7 B 283 GLN LEU SER ILE ARG CYS TRP TYR ASP LYS ASP GLY ARG SEQRES 8 B 283 LEU LEU GLN GLU PHE ASN LYS ILE GLU PRO PRO LEU ILE SEQRES 9 B 283 PHE GLU CYS ASN GLN ALA CYS SER CYS TRP ARG ASN CYS SEQRES 10 B 283 LYS ASN ARG VAL VAL GLN SER GLY ILE LYS VAL ARG LEU SEQRES 11 B 283 GLN LEU TYR ARG THR ALA LYS MET GLY TRP GLY VAL ARG SEQRES 12 B 283 ALA LEU GLN THR ILE PRO GLN GLY THR PHE ILE CYS GLU SEQRES 13 B 283 TYR VAL GLY GLU LEU ILE SER ASP ALA GLU ALA ASP VAL SEQRES 14 B 283 ARG GLU ASP ASP SER TYR LEU PHE ASP LEU ASP ASN LYS SEQRES 15 B 283 ASP GLY GLU VAL TYR CYS ILE ASP ALA ARG TYR TYR GLY SEQRES 16 B 283 ASN ILE SER ARG PHE ILE ASN HIS LEU CYS ASP PRO ASN SEQRES 17 B 283 ILE ILE PRO VAL ARG VAL PHE MET LEU HIS GLN ASP LEU SEQRES 18 B 283 ARG PHE PRO ARG ILE ALA PHE PHE SER SER ARG ASP ILE SEQRES 19 B 283 ARG THR GLY GLU GLU LEU GLY PHE ASP TYR GLY ASP ARG SEQRES 20 B 283 PHE TRP ASP ILE LYS SER LYS TYR PHE THR CYS GLN CYS SEQRES 21 B 283 GLY SER GLU LYS CYS LYS HIS SER ALA GLU ALA ILE ALA SEQRES 22 B 283 LEU GLU GLN SER ARG LEU ALA ARG LEU ASP HET ZN A1501 1 HET ZN A1502 1 HET ZN A1503 1 HET ZN A1504 1 HET SAM A1505 27 HET H30 A1506 23 HET ZN B1501 1 HET ZN B1502 1 HET ZN B1503 1 HET ZN B1504 1 HET SAM B1505 27 HET H30 B1506 23 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM H30 5'-METHOXY-6'-(1-METHYL-2,3,4,7-TETRAHYDROAZEPIN-5-YL) HETNAM 2 H30 SPIRO[CYCLOBUTANE-1,3'-INDOLE]-2'-AMINE FORMUL 3 ZN 8(ZN 2+) FORMUL 7 SAM 2(C15 H22 N6 O5 S) FORMUL 8 H30 2(C19 H25 N3 O) FORMUL 15 HOH *298(H2 O) HELIX 1 AA1 ASN A 967 LEU A 971 5 5 HELIX 2 AA2 VAL A 1031 GLY A 1035 5 5 HELIX 3 AA3 ASP A 1074 ASP A 1078 1 5 HELIX 4 AA4 ASN A 1106 ILE A 1111 5 6 HELIX 5 AA5 GLY A 1155 SER A 1163 1 9 HELIX 6 AA6 SER A 1178 GLU A 1185 1 8 HELIX 7 AA7 ASN B 967 LEU B 971 5 5 HELIX 8 AA8 CYS B 985 LEU B 990 1 6 HELIX 9 AA9 ASP B 1074 ARG B 1080 1 7 HELIX 10 AB1 ASN B 1106 ILE B 1111 5 6 HELIX 11 AB2 GLY B 1155 SER B 1163 1 9 HELIX 12 AB3 SER B 1178 LEU B 1184 1 7 SHEET 1 AA1 4 ILE A 921 CYS A 923 0 SHEET 2 AA1 4 CYS A 937 VAL A 938 -1 O CYS A 937 N ILE A 922 SHEET 3 AA1 4 LEU A1040 ARG A1044 1 O LEU A1042 N VAL A 938 SHEET 4 AA1 4 TRP A1050 ALA A1054 -1 O ARG A1053 N GLN A1041 SHEET 1 AA2 2 LYS A 951 TYR A 952 0 SHEET 2 AA2 2 TYR A1104 GLY A1105 1 O GLY A1105 N LYS A 951 SHEET 1 AA3 4 ILE A1014 PHE A1015 0 SHEET 2 AA3 4 ILE A1119 PHE A1125 1 O PHE A1125 N ILE A1014 SHEET 3 AA3 4 ARG A1135 SER A1140 -1 O ALA A1137 N VAL A1122 SHEET 4 AA3 4 PHE A1063 TYR A1067 -1 N ILE A1064 O PHE A1138 SHEET 1 AA4 3 GLU A1070 SER A1073 0 SHEET 2 AA4 3 TYR A1097 ASP A1100 -1 O ASP A1100 N GLU A1070 SHEET 3 AA4 3 LEU A1086 LEU A1089 -1 N PHE A1087 O ILE A1099 SHEET 1 AA5 2 ASN A1112 HIS A1113 0 SHEET 2 AA5 2 GLY A1151 PHE A1152 1 O PHE A1152 N ASN A1112 SHEET 1 AA6 4 ILE B 921 CYS B 923 0 SHEET 2 AA6 4 CYS B 937 VAL B 938 -1 O CYS B 937 N CYS B 923 SHEET 3 AA6 4 LEU B1040 ARG B1044 1 O LEU B1042 N VAL B 938 SHEET 4 AA6 4 TRP B1050 ALA B1054 -1 O GLY B1051 N TYR B1043 SHEET 1 AA7 2 LYS B 951 TYR B 952 0 SHEET 2 AA7 2 TYR B1104 GLY B1105 1 O GLY B1105 N LYS B 951 SHEET 1 AA8 4 CYS B 957 GLU B 958 0 SHEET 2 AA8 4 GLU B1070 SER B1073 1 O LEU B1071 N CYS B 957 SHEET 3 AA8 4 VAL B1096 ASP B1100 -1 O ASP B1100 N GLU B1070 SHEET 4 AA8 4 LEU B1086 ASP B1090 -1 N LEU B1089 O TYR B1097 SHEET 1 AA9 2 CYS B 994 TYR B 996 0 SHEET 2 AA9 2 LEU B1002 GLN B1004 -1 O LEU B1003 N TRP B 995 SHEET 1 AB1 4 LEU B1013 PHE B1015 0 SHEET 2 AB1 4 ILE B1119 PHE B1125 1 O PHE B1125 N ILE B1014 SHEET 3 AB1 4 ARG B1135 SER B1140 -1 O ARG B1135 N VAL B1124 SHEET 4 AB1 4 PHE B1063 TYR B1067 -1 N ILE B1064 O PHE B1138 SHEET 1 AB2 2 ASN B1112 HIS B1113 0 SHEET 2 AB2 2 GLY B1151 PHE B1152 1 O PHE B1152 N ASN B1112 LINK SG CYS A 974 ZN ZN A1502 1555 1555 2.45 LINK SG CYS A 974 ZN ZN A1503 1555 1555 2.27 LINK SG CYS A 976 ZN ZN A1503 1555 1555 2.35 LINK SG CYS A 980 ZN ZN A1501 1555 1555 2.39 LINK SG CYS A 980 ZN ZN A1503 1555 1555 2.32 LINK SG CYS A 985 ZN ZN A1503 1555 1555 2.31 LINK SG CYS A 987 ZN ZN A1502 1555 1555 2.30 LINK SG CYS A1017 ZN ZN A1501 1555 1555 2.39 LINK SG CYS A1017 ZN ZN A1502 1555 1555 2.28 LINK SG CYS A1021 ZN ZN A1502 1555 1555 2.23 LINK SG CYS A1023 ZN ZN A1501 1555 1555 2.32 LINK SG CYS A1027 ZN ZN A1501 1555 1555 2.33 LINK SG CYS A1115 ZN ZN A1504 1555 1555 2.38 LINK SG CYS A1168 ZN ZN A1504 1555 1555 2.24 LINK SG CYS A1170 ZN ZN A1504 1555 1555 2.29 LINK SG CYS A1175 ZN ZN A1504 1555 1555 2.39 LINK SG CYS B 974 ZN ZN B1502 1555 1555 2.48 LINK SG CYS B 974 ZN ZN B1503 1555 1555 2.35 LINK SG CYS B 976 ZN ZN B1503 1555 1555 2.34 LINK SG CYS B 980 ZN ZN B1501 1555 1555 2.30 LINK SG CYS B 980 ZN ZN B1503 1555 1555 2.31 LINK SG CYS B 985 ZN ZN B1503 1555 1555 2.30 LINK SG CYS B 987 ZN ZN B1502 1555 1555 2.31 LINK SG CYS B1017 ZN ZN B1501 1555 1555 2.29 LINK SG CYS B1017 ZN ZN B1502 1555 1555 2.41 LINK SG CYS B1021 ZN ZN B1502 1555 1555 2.28 LINK SG CYS B1023 ZN ZN B1501 1555 1555 2.30 LINK SG CYS B1027 ZN ZN B1501 1555 1555 2.35 LINK SG CYS B1115 ZN ZN B1504 1555 1555 2.34 LINK SG CYS B1168 ZN ZN B1504 1555 1555 2.25 LINK SG CYS B1170 ZN ZN B1504 1555 1555 2.31 LINK SG CYS B1175 ZN ZN B1504 1555 1555 2.38 CRYST1 55.852 72.730 63.629 90.00 92.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017904 0.000000 0.000832 0.00000 SCALE2 0.000000 0.013749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015733 0.00000