HEADER TRANSPORT PROTEIN 04-NOV-20 7DEI TITLE STRUCTURE OF HUMAN ORP3 ORD DOMAIN IN COMPLEX WITH PI(4)P COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OSBP-RELATED PROTEIN 3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OSBPL3, KIAA0704, ORP3, OSBP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS-GEX-4T KEYWDS PHOSPHOINOSITIDE OXYSTEROL-BINDING PROTEIN LIPID TRANSFER PROTEIN, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.TONG,L.TAN,Y.J.IM REVDAT 4 29-NOV-23 7DEI 1 REMARK REVDAT 3 05-MAY-21 7DEI 1 JRNL REVDAT 2 28-APR-21 7DEI 1 JRNL REVDAT 1 24-MAR-21 7DEI 0 JRNL AUTH J.TONG,L.TAN,Y.J.IM JRNL TITL STRUCTURE OF HUMAN ORP3 ORD REVEALS CONSERVATION OF A KEY JRNL TITL 2 FUNCTION AND LIGAND SPECIFICITY IN OSBP-RELATED PROTEINS. JRNL REF PLOS ONE V. 16 48781 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 33857182 JRNL DOI 10.1371/JOURNAL.PONE.0248781 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 31529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.380 REMARK 3 FREE R VALUE TEST SET COUNT : 2013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4500 - 6.2700 0.98 2237 152 0.1849 0.2065 REMARK 3 2 6.2700 - 4.9800 0.99 2154 149 0.2122 0.2627 REMARK 3 3 4.9800 - 4.3500 0.97 2075 144 0.1846 0.2145 REMARK 3 4 4.3500 - 3.9500 0.99 2111 141 0.1992 0.2433 REMARK 3 5 3.9500 - 3.6700 1.00 2115 143 0.2160 0.2630 REMARK 3 6 3.6700 - 3.4500 1.00 2115 145 0.2233 0.2867 REMARK 3 7 3.4500 - 3.2800 1.00 2107 142 0.2353 0.3075 REMARK 3 8 3.2800 - 3.1400 1.00 2098 142 0.2704 0.2992 REMARK 3 9 3.1400 - 3.0200 1.00 2093 143 0.2545 0.3266 REMARK 3 10 3.0200 - 2.9100 1.00 2082 138 0.2766 0.3537 REMARK 3 11 2.9100 - 2.8200 1.00 2108 149 0.2755 0.3272 REMARK 3 12 2.8200 - 2.7400 1.00 2068 141 0.2821 0.3793 REMARK 3 13 2.7400 - 2.6700 1.00 2077 143 0.2903 0.3836 REMARK 3 14 2.6700 - 2.6000 0.99 2076 141 0.3187 0.4392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.385 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6438 REMARK 3 ANGLE : 1.612 8720 REMARK 3 CHIRALITY : 0.084 893 REMARK 3 PLANARITY : 0.011 1876 REMARK 3 DIHEDRAL : 27.731 2388 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31618 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4INQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES-NAOH PH 6.0, 25% PEG 1500, REMARK 280 0.1 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.48533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.97067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.97067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.48533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 499 REMARK 465 SER A 500 REMARK 465 PRO A 501 REMARK 465 GLU A 502 REMARK 465 PHE A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 ARG A 506 REMARK 465 GLU A 507 REMARK 465 ALA A 508 REMARK 465 LYS A 509 REMARK 465 SER A 510 REMARK 465 GLY B 499 REMARK 465 SER B 500 REMARK 465 PRO B 501 REMARK 465 GLU B 502 REMARK 465 PHE B 503 REMARK 465 SER B 504 REMARK 465 GLY B 505 REMARK 465 ARG B 506 REMARK 465 GLU B 507 REMARK 465 ALA B 508 REMARK 465 LYS B 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 807 O HOH A 1001 1.96 REMARK 500 N ARG A 809 O HOH A 1001 2.00 REMARK 500 O TRP B 658 O HOH B 1001 2.09 REMARK 500 O VAL B 686 O HOH B 1002 2.13 REMARK 500 O HOH B 1013 O HOH B 1030 2.14 REMARK 500 OD1 ASP B 741 OG SER B 743 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 533 O GLY B 867 4545 1.98 REMARK 500 O LEU A 674 NH1 ARG B 511 5444 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 823 CD GLU B 823 OE2 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 696 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 SER B 523 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 ARG B 533 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 LYS B 654 CB - CG - CD ANGL. DEV. = 21.6 DEGREES REMARK 500 LYS B 654 N - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 ARG B 853 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 523 140.71 -176.85 REMARK 500 PRO A 552 -0.01 -55.31 REMARK 500 TYR A 565 40.09 -108.59 REMARK 500 ARG A 599 47.44 -88.37 REMARK 500 SER A 695 169.59 152.06 REMARK 500 TRP A 754 -8.17 -57.34 REMARK 500 ASP A 859 -70.58 -11.37 REMARK 500 LEU A 876 27.58 49.63 REMARK 500 SER B 522 39.94 76.55 REMARK 500 SER B 523 99.40 66.36 REMARK 500 ILE B 526 -32.65 -39.84 REMARK 500 TYR B 565 41.77 -104.88 REMARK 500 LYS B 660 -8.66 73.16 REMARK 500 LEU B 694 -7.70 80.41 REMARK 500 SER B 695 131.48 -170.44 REMARK 500 ASN B 731 34.04 -95.86 REMARK 500 GLU B 756 -60.35 -123.16 REMARK 500 SER B 764 -4.58 63.81 REMARK 500 TYR B 783 25.62 43.35 REMARK 500 PRO B 805 -8.37 -59.76 REMARK 500 ASP B 859 -66.10 -10.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU B 561 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIF A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIF B 901 DBREF 7DEI A 504 887 UNP Q9H4L5 OSBL3_HUMAN 504 887 DBREF 7DEI B 504 887 UNP Q9H4L5 OSBL3_HUMAN 504 887 SEQADV 7DEI GLY A 499 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI SER A 500 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI PRO A 501 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI GLU A 502 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI PHE A 503 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI SER A 515 UNP Q9H4L5 CYS 515 ENGINEERED MUTATION SEQADV 7DEI SER A 520 UNP Q9H4L5 CYS 520 ENGINEERED MUTATION SEQADV 7DEI A UNP Q9H4L5 ASP 859 DELETION SEQADV 7DEI GLY A 860 UNP Q9H4L5 ASP 861 ENGINEERED MUTATION SEQADV 7DEI GLY B 499 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI SER B 500 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI PRO B 501 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI GLU B 502 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI PHE B 503 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEI SER B 515 UNP Q9H4L5 CYS 515 ENGINEERED MUTATION SEQADV 7DEI SER B 520 UNP Q9H4L5 CYS 520 ENGINEERED MUTATION SEQADV 7DEI B UNP Q9H4L5 ASP 859 DELETION SEQADV 7DEI GLY B 860 UNP Q9H4L5 ASP 861 ENGINEERED MUTATION SEQRES 1 A 388 GLY SER PRO GLU PHE SER GLY ARG GLU ALA LYS SER ARG SEQRES 2 A 388 ARG ARG THR SER LEU PRO ALA PRO SER PRO SER SER SER SEQRES 3 A 388 ASN ILE SER LEU TRP ASN ILE LEU ARG ASN ASN ILE GLY SEQRES 4 A 388 LYS ASP LEU SER LYS VAL ALA MET PRO VAL GLU LEU ASN SEQRES 5 A 388 GLU PRO LEU ASN THR LEU GLN ARG LEU CYS GLU GLU LEU SEQRES 6 A 388 GLU TYR SER GLU LEU LEU ASP LYS ALA ALA GLN ILE PRO SEQRES 7 A 388 SER PRO LEU GLU ARG MET VAL TYR VAL ALA ALA PHE ALA SEQRES 8 A 388 ILE SER ALA TYR ALA SER SER TYR TYR ARG ALA GLY SER SEQRES 9 A 388 LYS PRO PHE ASN PRO VAL LEU GLY GLU THR TYR GLU CYS SEQRES 10 A 388 ILE ARG GLU ASP LYS GLY PHE GLN PHE PHE SER GLU GLN SEQRES 11 A 388 VAL SER HIS HIS PRO PRO ILE SER ALA CYS HIS ALA GLU SEQRES 12 A 388 SER ARG ASN PHE VAL PHE TRP GLN ASP VAL ARG TRP LYS SEQRES 13 A 388 ASN LYS PHE TRP GLY LYS SER MET GLU ILE VAL PRO ILE SEQRES 14 A 388 GLY THR THR HIS VAL THR LEU PRO VAL PHE GLY ASP HIS SEQRES 15 A 388 PHE GLU TRP ASN LYS VAL THR SER CYS ILE HIS ASN ILE SEQRES 16 A 388 LEU SER GLY GLN ARG TRP ILE GLU HIS TYR GLY GLU ILE SEQRES 17 A 388 VAL ILE LYS ASN LEU HIS ASP ASP SER CYS TYR CYS LYS SEQRES 18 A 388 VAL ASN PHE ILE LYS ALA LYS TYR TRP SER THR ASN ALA SEQRES 19 A 388 HIS GLU ILE GLU GLY THR VAL PHE ASP ARG SER GLY LYS SEQRES 20 A 388 ALA VAL HIS ARG LEU PHE GLY LYS TRP HIS GLU SER ILE SEQRES 21 A 388 TYR CYS GLY GLY GLY SER SER SER ALA CYS VAL TRP ARG SEQRES 22 A 388 ALA ASN PRO MET PRO LYS GLY TYR GLU GLN TYR TYR SER SEQRES 23 A 388 PHE THR GLN PHE ALA LEU GLU LEU ASN GLU MET ASP PRO SEQRES 24 A 388 SER SER LYS SER LEU LEU PRO PRO THR ASP THR ARG PHE SEQRES 25 A 388 ARG PRO ASP GLN ARG PHE LEU GLU GLU GLY ASN LEU GLU SEQRES 26 A 388 GLU ALA GLU ILE GLN LYS GLN ARG ILE GLU GLN LEU GLN SEQRES 27 A 388 ARG GLU ARG ARG ARG VAL LEU GLU GLU ASN HIS VAL GLU SEQRES 28 A 388 HIS GLN PRO ARG PHE PHE ARG LYS SER ASP GLY SER TRP SEQRES 29 A 388 VAL SER ASN GLY THR TYR LEU GLU LEU ARG LYS ASP LEU SEQRES 30 A 388 GLY PHE SER LYS LEU ASP HIS PRO VAL LEU TRP SEQRES 1 B 388 GLY SER PRO GLU PHE SER GLY ARG GLU ALA LYS SER ARG SEQRES 2 B 388 ARG ARG THR SER LEU PRO ALA PRO SER PRO SER SER SER SEQRES 3 B 388 ASN ILE SER LEU TRP ASN ILE LEU ARG ASN ASN ILE GLY SEQRES 4 B 388 LYS ASP LEU SER LYS VAL ALA MET PRO VAL GLU LEU ASN SEQRES 5 B 388 GLU PRO LEU ASN THR LEU GLN ARG LEU CYS GLU GLU LEU SEQRES 6 B 388 GLU TYR SER GLU LEU LEU ASP LYS ALA ALA GLN ILE PRO SEQRES 7 B 388 SER PRO LEU GLU ARG MET VAL TYR VAL ALA ALA PHE ALA SEQRES 8 B 388 ILE SER ALA TYR ALA SER SER TYR TYR ARG ALA GLY SER SEQRES 9 B 388 LYS PRO PHE ASN PRO VAL LEU GLY GLU THR TYR GLU CYS SEQRES 10 B 388 ILE ARG GLU ASP LYS GLY PHE GLN PHE PHE SER GLU GLN SEQRES 11 B 388 VAL SER HIS HIS PRO PRO ILE SER ALA CYS HIS ALA GLU SEQRES 12 B 388 SER ARG ASN PHE VAL PHE TRP GLN ASP VAL ARG TRP LYS SEQRES 13 B 388 ASN LYS PHE TRP GLY LYS SER MET GLU ILE VAL PRO ILE SEQRES 14 B 388 GLY THR THR HIS VAL THR LEU PRO VAL PHE GLY ASP HIS SEQRES 15 B 388 PHE GLU TRP ASN LYS VAL THR SER CYS ILE HIS ASN ILE SEQRES 16 B 388 LEU SER GLY GLN ARG TRP ILE GLU HIS TYR GLY GLU ILE SEQRES 17 B 388 VAL ILE LYS ASN LEU HIS ASP ASP SER CYS TYR CYS LYS SEQRES 18 B 388 VAL ASN PHE ILE LYS ALA LYS TYR TRP SER THR ASN ALA SEQRES 19 B 388 HIS GLU ILE GLU GLY THR VAL PHE ASP ARG SER GLY LYS SEQRES 20 B 388 ALA VAL HIS ARG LEU PHE GLY LYS TRP HIS GLU SER ILE SEQRES 21 B 388 TYR CYS GLY GLY GLY SER SER SER ALA CYS VAL TRP ARG SEQRES 22 B 388 ALA ASN PRO MET PRO LYS GLY TYR GLU GLN TYR TYR SER SEQRES 23 B 388 PHE THR GLN PHE ALA LEU GLU LEU ASN GLU MET ASP PRO SEQRES 24 B 388 SER SER LYS SER LEU LEU PRO PRO THR ASP THR ARG PHE SEQRES 25 B 388 ARG PRO ASP GLN ARG PHE LEU GLU GLU GLY ASN LEU GLU SEQRES 26 B 388 GLU ALA GLU ILE GLN LYS GLN ARG ILE GLU GLN LEU GLN SEQRES 27 B 388 ARG GLU ARG ARG ARG VAL LEU GLU GLU ASN HIS VAL GLU SEQRES 28 B 388 HIS GLN PRO ARG PHE PHE ARG LYS SER ASP GLY SER TRP SEQRES 29 B 388 VAL SER ASN GLY THR TYR LEU GLU LEU ARG LYS ASP LEU SEQRES 30 B 388 GLY PHE SER LYS LEU ASP HIS PRO VAL LEU TRP HET PIF A 901 43 HET PIF B 901 43 HETNAM PIF (2R)-3-{[(S)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6- HETNAM 2 PIF TETRAHYDROXY-4-(PHOSPHONOOXY) HETNAM 3 PIF CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL HETNAM 4 PIF DIOCTANOATE HETSYN PIF L-ALPHA-D-MYOPHOSPHATIDYLINOSITOL 4-PHOSPHATE; D(+)SN1, HETSYN 2 PIF 2DI-O-OCTANOYLGLYCERYL FORMUL 3 PIF 2(C25 H48 O16 P2) FORMUL 5 HOH *51(H2 O) HELIX 1 AA1 SER A 527 ASN A 534 1 8 HELIX 2 AA2 ASP A 539 VAL A 543 5 5 HELIX 3 AA3 PRO A 546 GLU A 548 5 3 HELIX 4 AA4 THR A 555 GLU A 562 1 8 HELIX 5 AA5 LEU A 563 TYR A 565 5 3 HELIX 6 AA6 SER A 566 ALA A 573 1 8 HELIX 7 AA7 SER A 577 ALA A 592 1 16 HELIX 8 AA8 TYR A 593 TYR A 598 5 6 HELIX 9 AA9 GLY A 778 TYR A 783 5 6 HELIX 10 AB1 THR A 786 ASN A 793 1 8 HELIX 11 AB2 SER A 798 LEU A 803 1 6 HELIX 12 AB3 ASP A 807 PHE A 810 5 4 HELIX 13 AB4 ARG A 811 GLU A 819 1 9 HELIX 14 AB5 ASN A 821 ASN A 846 1 26 HELIX 15 AB6 THR A 868 LYS A 874 1 7 HELIX 16 AB7 ASP A 875 LEU A 881 5 7 HELIX 17 AB8 SER B 527 ASN B 534 1 8 HELIX 18 AB9 ASP B 539 VAL B 543 5 5 HELIX 19 AC1 PRO B 546 GLU B 548 5 3 HELIX 20 AC2 THR B 555 GLU B 562 1 8 HELIX 21 AC3 LEU B 563 TYR B 565 5 3 HELIX 22 AC4 SER B 566 ALA B 573 1 8 HELIX 23 AC5 SER B 577 ALA B 592 1 16 HELIX 24 AC6 TYR B 593 ARG B 599 5 7 HELIX 25 AC7 GLY B 778 TYR B 782 5 5 HELIX 26 AC8 PHE B 788 ASN B 793 1 6 HELIX 27 AC9 SER B 799 LEU B 803 5 5 HELIX 28 AD1 ASP B 807 PHE B 810 5 4 HELIX 29 AD2 ARG B 811 GLU B 819 1 9 HELIX 30 AD3 ASN B 821 ASN B 846 1 26 HELIX 31 AD4 GLY B 867 LYS B 874 1 8 HELIX 32 AD5 ASP B 875 GLY B 877 5 3 SHEET 1 AA1 2 ASN A 550 ASN A 554 0 SHEET 2 AA1 2 LYS A 603 PHE A 605 1 O PHE A 605 N LEU A 553 SHEET 1 AA2 8 THR A 612 ARG A 617 0 SHEET 2 AA2 8 PHE A 622 SER A 630 -1 O PHE A 624 N CYS A 615 SHEET 3 AA2 8 ILE A 635 SER A 642 -1 O HIS A 639 N PHE A 625 SHEET 4 AA2 8 PHE A 645 TRP A 653 -1 O VAL A 651 N SER A 636 SHEET 5 AA2 8 THR A 670 THR A 673 -1 O HIS A 671 N TRP A 648 SHEET 6 AA2 8 HIS A 680 TRP A 683 -1 O PHE A 681 N VAL A 672 SHEET 7 AA2 8 TRP A 699 ASN A 710 -1 O LYS A 709 N GLU A 682 SHEET 8 AA2 8 PRO A 666 ILE A 667 0 SHEET 1 AA312 LYS A 656 TRP A 658 0 SHEET 2 AA312 SER A 661 ILE A 664 -1 O GLU A 663 N LYS A 656 SHEET 3 AA312 THR A 687 HIS A 691 -1 O SER A 688 N ILE A 664 SHEET 4 AA312 TRP A 699 ASN A 710 -1 O GLU A 701 N CYS A 689 SHEET 5 AA312 HIS A 680 TRP A 683 -1 N GLU A 682 O LYS A 709 SHEET 6 AA312 THR A 670 THR A 673 -1 N VAL A 672 O PHE A 681 SHEET 7 AA312 PHE A 645 TRP A 653 -1 N TRP A 648 O HIS A 671 SHEET 8 AA312 CYS A 716 PHE A 722 0 SHEET 9 AA312 GLU A 734 ASP A 741 -1 O GLU A 736 N ASN A 721 SHEET 10 AA312 ALA A 746 LYS A 753 -1 O VAL A 747 N VAL A 739 SHEET 11 AA312 SER A 757 GLY A 761 -1 O TYR A 759 N PHE A 751 SHEET 12 AA312 SER A 766 ARG A 771 -1 O ALA A 767 N CYS A 760 SHEET 1 AA4 2 PHE A 855 LYS A 857 0 SHEET 2 AA4 2 TRP A 863 SER A 865 -1 O VAL A 864 N ARG A 856 SHEET 1 AA5 2 ASN B 550 ASN B 554 0 SHEET 2 AA5 2 LYS B 603 PHE B 605 1 O PHE B 605 N LEU B 553 SHEET 1 AA6 8 THR B 612 ARG B 617 0 SHEET 2 AA6 8 PHE B 622 SER B 630 -1 O PHE B 624 N CYS B 615 SHEET 3 AA6 8 ILE B 635 SER B 642 -1 O ILE B 635 N SER B 630 SHEET 4 AA6 8 VAL B 646 TRP B 653 -1 O PHE B 647 N ALA B 640 SHEET 5 AA6 8 THR B 669 LEU B 674 -1 O THR B 673 N VAL B 646 SHEET 6 AA6 8 ASP B 679 ASN B 684 -1 O PHE B 681 N VAL B 672 SHEET 7 AA6 8 TRP B 699 ASN B 710 -1 O LYS B 709 N GLU B 682 SHEET 8 AA6 8 PRO B 666 ILE B 667 0 SHEET 1 AA712 LYS B 656 PHE B 657 0 SHEET 2 AA712 MET B 662 ILE B 664 -1 O GLU B 663 N LYS B 656 SHEET 3 AA712 THR B 687 HIS B 691 -1 O ILE B 690 N MET B 662 SHEET 4 AA712 TRP B 699 ASN B 710 -1 O TRP B 699 N HIS B 691 SHEET 5 AA712 ASP B 679 ASN B 684 -1 N GLU B 682 O LYS B 709 SHEET 6 AA712 THR B 669 LEU B 674 -1 N VAL B 672 O PHE B 681 SHEET 7 AA712 VAL B 646 TRP B 653 -1 N VAL B 646 O THR B 673 SHEET 8 AA712 CYS B 716 PHE B 722 0 SHEET 9 AA712 GLU B 734 ASP B 741 -1 O GLU B 736 N ASN B 721 SHEET 10 AA712 ALA B 746 LYS B 753 -1 O HIS B 748 N VAL B 739 SHEET 11 AA712 SER B 757 GLY B 761 -1 O GLY B 761 N ARG B 749 SHEET 12 AA712 ALA B 767 ARG B 771 -1 O ALA B 767 N CYS B 760 SHEET 1 AA8 2 PHE B 855 SER B 858 0 SHEET 2 AA8 2 SER B 862 SER B 865 -1 O VAL B 864 N ARG B 856 CISPEP 1 HIS A 632 PRO A 633 0 0.18 CISPEP 2 HIS B 632 PRO B 633 0 -0.66 SITE 1 AC1 21 LEU A 540 SER A 541 LYS A 542 VAL A 543 SITE 2 AC1 21 ALA A 544 MET A 545 GLY A 601 LYS A 603 SITE 3 AC1 21 PRO A 604 ASN A 606 HIS A 631 HIS A 632 SITE 4 AC1 21 TRP A 653 ASN A 655 MET A 662 ARG A 698 SITE 5 AC1 21 LYS A 829 GLU A 833 GLN A 836 ARG A 837 SITE 6 AC1 21 HOH A1016 SITE 1 AC2 20 LEU B 540 SER B 541 LYS B 542 VAL B 543 SITE 2 AC2 20 ALA B 544 MET B 545 ARG B 558 LYS B 603 SITE 3 AC2 20 PRO B 604 ASN B 606 HIS B 631 HIS B 632 SITE 4 AC2 20 TRP B 653 MET B 662 ILE B 664 LYS B 829 SITE 5 AC2 20 GLU B 833 GLN B 836 ARG B 837 ARG B 840 CRYST1 95.801 95.801 190.456 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010438 0.006027 0.000000 0.00000 SCALE2 0.000000 0.012053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005251 0.00000