HEADER TRANSPORT PROTEIN 04-NOV-20 7DEJ TITLE STRUCTURE OF HUMAN ORP3 ORD IN APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OSBP-RELATED PROTEIN 3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OSBPL3, KIAA0704, ORP3, OSBP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS-GEX-4T KEYWDS PHOSPHOINOSITIDE OXYSTEROL-BINDING PROTEIN LIPID TRANSFER PROTEIN, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.TONG,L.TAN,Y.J.IM REVDAT 4 29-NOV-23 7DEJ 1 REMARK REVDAT 3 05-MAY-21 7DEJ 1 JRNL REVDAT 2 28-APR-21 7DEJ 1 JRNL REVDAT 1 24-MAR-21 7DEJ 0 JRNL AUTH J.TONG,L.TAN,Y.J.IM JRNL TITL STRUCTURE OF HUMAN ORP3 ORD REVEALS CONSERVATION OF A KEY JRNL TITL 2 FUNCTION AND LIGAND SPECIFICITY IN OSBP-RELATED PROTEINS. JRNL REF PLOS ONE V. 16 48781 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 33857182 JRNL DOI 10.1371/JOURNAL.PONE.0248781 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 27999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4400 - 5.8100 0.94 2714 128 0.2243 0.2695 REMARK 3 2 5.8100 - 4.6100 0.99 2683 154 0.2088 0.2868 REMARK 3 3 4.6100 - 4.0300 0.99 2681 142 0.2047 0.2275 REMARK 3 4 4.0300 - 3.6600 0.99 2650 146 0.2191 0.2725 REMARK 3 5 3.6600 - 3.4000 0.99 2629 150 0.2318 0.2826 REMARK 3 6 3.4000 - 3.2000 1.00 2616 143 0.2640 0.3093 REMARK 3 7 3.2000 - 3.0400 1.00 2687 144 0.2705 0.3368 REMARK 3 8 3.0400 - 2.9100 1.00 2627 140 0.2826 0.3354 REMARK 3 9 2.9100 - 2.8000 1.00 2667 124 0.2874 0.3583 REMARK 3 10 2.8000 - 2.7000 1.00 2650 124 0.3103 0.4077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.993 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6335 REMARK 3 ANGLE : 1.335 8582 REMARK 3 CHIRALITY : 0.072 877 REMARK 3 PLANARITY : 0.009 1118 REMARK 3 DIHEDRAL : 26.805 2346 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28026 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4INQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES-NAOH PH 6.0, 25% PEG 1500, REMARK 280 0.1 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.96567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.93133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.93133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.96567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 499 REMARK 465 SER A 500 REMARK 465 PRO A 501 REMARK 465 GLU A 502 REMARK 465 PHE A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 ARG A 506 REMARK 465 GLU A 507 REMARK 465 ALA A 508 REMARK 465 LYS A 509 REMARK 465 SER A 510 REMARK 465 ARG A 511 REMARK 465 GLY B 499 REMARK 465 SER B 500 REMARK 465 PRO B 501 REMARK 465 GLU B 502 REMARK 465 PHE B 503 REMARK 465 SER B 504 REMARK 465 GLY B 505 REMARK 465 ARG B 506 REMARK 465 GLU B 507 REMARK 465 ALA B 508 REMARK 465 LYS B 509 REMARK 465 SER B 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS B 726 O HOH B 901 1.84 REMARK 500 O LYS B 726 O HOH B 901 1.92 REMARK 500 OE1 GLU B 561 O HOH B 902 1.95 REMARK 500 O SER A 602 O HOH A 901 1.95 REMARK 500 O LEU B 876 O HOH B 903 2.03 REMARK 500 CB ALA B 725 O HOH B 901 2.03 REMARK 500 O HOH B 916 O HOH B 921 2.05 REMARK 500 O LYS B 724 O HOH B 904 2.06 REMARK 500 OE2 GLU B 614 O HOH B 905 2.10 REMARK 500 O ILE A 832 NE2 GLN A 836 2.11 REMARK 500 OE1 GLU B 823 O HOH B 906 2.14 REMARK 500 NH2 ARG A 581 OD2 ASP A 679 2.17 REMARK 500 N GLU B 705 O HOH B 907 2.17 REMARK 500 O HOH B 938 O HOH B 945 2.18 REMARK 500 O LEU B 876 O HOH B 908 2.19 REMARK 500 NH2 ARG B 617 OE1 GLU B 791 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 614 CD GLU A 614 OE1 0.083 REMARK 500 CYS A 689 CB CYS A 689 SG 0.170 REMARK 500 CYS A 760 CB CYS A 760 SG 0.176 REMARK 500 CYS B 615 CB CYS B 615 SG 0.282 REMARK 500 CYS B 760 CB CYS B 760 SG 0.203 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 614 CG - CD - OE1 ANGL. DEV. = -15.2 DEGREES REMARK 500 CYS A 689 CA - CB - SG ANGL. DEV. = 13.8 DEGREES REMARK 500 CYS B 760 CA - CB - SG ANGL. DEV. = 13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 517 -3.77 -55.61 REMARK 500 ASN A 535 43.88 -142.93 REMARK 500 PRO A 552 52.10 -68.66 REMARK 500 GLU A 561 -37.95 -36.64 REMARK 500 GLU A 562 -3.09 -58.51 REMARK 500 ALA A 573 7.04 -62.76 REMARK 500 ARG A 599 40.77 -105.23 REMARK 500 GLN A 649 -173.83 -170.62 REMARK 500 ASP A 650 109.52 -163.22 REMARK 500 LYS A 654 68.53 -100.91 REMARK 500 TRP A 658 -166.08 -78.91 REMARK 500 VAL A 676 0.14 -62.23 REMARK 500 TYR A 727 -39.05 -37.76 REMARK 500 GLU A 756 -60.19 -129.86 REMARK 500 ASP A 859 12.90 59.42 REMARK 500 PHE A 878 93.24 -63.80 REMARK 500 PRO A 884 141.15 -35.94 REMARK 500 SER B 523 72.49 63.88 REMARK 500 LEU B 528 -61.96 -94.65 REMARK 500 PRO B 552 43.02 -75.33 REMARK 500 GLU B 562 2.46 -65.61 REMARK 500 TYR B 565 40.02 -109.24 REMARK 500 LYS B 660 -6.54 77.82 REMARK 500 ASN B 692 44.52 70.65 REMARK 500 LEU B 694 -2.19 62.87 REMARK 500 SER B 695 147.69 -175.57 REMARK 500 ASP B 713 116.02 -164.07 REMARK 500 GLU B 756 -54.50 -123.60 REMARK 500 TYR B 783 8.41 55.72 REMARK 500 ASP B 859 -74.85 -12.11 REMARK 500 SER B 879 42.34 -74.10 REMARK 500 LYS B 880 16.43 -153.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 601 SER A 602 -147.56 REMARK 500 HIS A 883 PRO A 884 -144.66 REMARK 500 SER B 858 ASP B 859 -125.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 614 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7DEJ A 504 887 UNP Q9H4L5 OSBL3_HUMAN 504 887 DBREF 7DEJ B 504 887 UNP Q9H4L5 OSBL3_HUMAN 504 887 SEQADV 7DEJ GLY A 499 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ SER A 500 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ PRO A 501 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ GLU A 502 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ PHE A 503 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ SER A 515 UNP Q9H4L5 CYS 515 ENGINEERED MUTATION SEQADV 7DEJ SER A 520 UNP Q9H4L5 CYS 520 ENGINEERED MUTATION SEQADV 7DEJ A UNP Q9H4L5 ASP 859 DELETION SEQADV 7DEJ GLY A 860 UNP Q9H4L5 ASP 861 ENGINEERED MUTATION SEQADV 7DEJ GLY B 499 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ SER B 500 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ PRO B 501 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ GLU B 502 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ PHE B 503 UNP Q9H4L5 EXPRESSION TAG SEQADV 7DEJ SER B 515 UNP Q9H4L5 CYS 515 ENGINEERED MUTATION SEQADV 7DEJ SER B 520 UNP Q9H4L5 CYS 520 ENGINEERED MUTATION SEQADV 7DEJ B UNP Q9H4L5 ASP 859 DELETION SEQADV 7DEJ GLY B 860 UNP Q9H4L5 ASP 861 ENGINEERED MUTATION SEQRES 1 A 388 GLY SER PRO GLU PHE SER GLY ARG GLU ALA LYS SER ARG SEQRES 2 A 388 ARG ARG THR SER LEU PRO ALA PRO SER PRO SER SER SER SEQRES 3 A 388 ASN ILE SER LEU TRP ASN ILE LEU ARG ASN ASN ILE GLY SEQRES 4 A 388 LYS ASP LEU SER LYS VAL ALA MET PRO VAL GLU LEU ASN SEQRES 5 A 388 GLU PRO LEU ASN THR LEU GLN ARG LEU CYS GLU GLU LEU SEQRES 6 A 388 GLU TYR SER GLU LEU LEU ASP LYS ALA ALA GLN ILE PRO SEQRES 7 A 388 SER PRO LEU GLU ARG MET VAL TYR VAL ALA ALA PHE ALA SEQRES 8 A 388 ILE SER ALA TYR ALA SER SER TYR TYR ARG ALA GLY SER SEQRES 9 A 388 LYS PRO PHE ASN PRO VAL LEU GLY GLU THR TYR GLU CYS SEQRES 10 A 388 ILE ARG GLU ASP LYS GLY PHE GLN PHE PHE SER GLU GLN SEQRES 11 A 388 VAL SER HIS HIS PRO PRO ILE SER ALA CYS HIS ALA GLU SEQRES 12 A 388 SER ARG ASN PHE VAL PHE TRP GLN ASP VAL ARG TRP LYS SEQRES 13 A 388 ASN LYS PHE TRP GLY LYS SER MET GLU ILE VAL PRO ILE SEQRES 14 A 388 GLY THR THR HIS VAL THR LEU PRO VAL PHE GLY ASP HIS SEQRES 15 A 388 PHE GLU TRP ASN LYS VAL THR SER CYS ILE HIS ASN ILE SEQRES 16 A 388 LEU SER GLY GLN ARG TRP ILE GLU HIS TYR GLY GLU ILE SEQRES 17 A 388 VAL ILE LYS ASN LEU HIS ASP ASP SER CYS TYR CYS LYS SEQRES 18 A 388 VAL ASN PHE ILE LYS ALA LYS TYR TRP SER THR ASN ALA SEQRES 19 A 388 HIS GLU ILE GLU GLY THR VAL PHE ASP ARG SER GLY LYS SEQRES 20 A 388 ALA VAL HIS ARG LEU PHE GLY LYS TRP HIS GLU SER ILE SEQRES 21 A 388 TYR CYS GLY GLY GLY SER SER SER ALA CYS VAL TRP ARG SEQRES 22 A 388 ALA ASN PRO MET PRO LYS GLY TYR GLU GLN TYR TYR SER SEQRES 23 A 388 PHE THR GLN PHE ALA LEU GLU LEU ASN GLU MET ASP PRO SEQRES 24 A 388 SER SER LYS SER LEU LEU PRO PRO THR ASP THR ARG PHE SEQRES 25 A 388 ARG PRO ASP GLN ARG PHE LEU GLU GLU GLY ASN LEU GLU SEQRES 26 A 388 GLU ALA GLU ILE GLN LYS GLN ARG ILE GLU GLN LEU GLN SEQRES 27 A 388 ARG GLU ARG ARG ARG VAL LEU GLU GLU ASN HIS VAL GLU SEQRES 28 A 388 HIS GLN PRO ARG PHE PHE ARG LYS SER ASP GLY SER TRP SEQRES 29 A 388 VAL SER ASN GLY THR TYR LEU GLU LEU ARG LYS ASP LEU SEQRES 30 A 388 GLY PHE SER LYS LEU ASP HIS PRO VAL LEU TRP SEQRES 1 B 388 GLY SER PRO GLU PHE SER GLY ARG GLU ALA LYS SER ARG SEQRES 2 B 388 ARG ARG THR SER LEU PRO ALA PRO SER PRO SER SER SER SEQRES 3 B 388 ASN ILE SER LEU TRP ASN ILE LEU ARG ASN ASN ILE GLY SEQRES 4 B 388 LYS ASP LEU SER LYS VAL ALA MET PRO VAL GLU LEU ASN SEQRES 5 B 388 GLU PRO LEU ASN THR LEU GLN ARG LEU CYS GLU GLU LEU SEQRES 6 B 388 GLU TYR SER GLU LEU LEU ASP LYS ALA ALA GLN ILE PRO SEQRES 7 B 388 SER PRO LEU GLU ARG MET VAL TYR VAL ALA ALA PHE ALA SEQRES 8 B 388 ILE SER ALA TYR ALA SER SER TYR TYR ARG ALA GLY SER SEQRES 9 B 388 LYS PRO PHE ASN PRO VAL LEU GLY GLU THR TYR GLU CYS SEQRES 10 B 388 ILE ARG GLU ASP LYS GLY PHE GLN PHE PHE SER GLU GLN SEQRES 11 B 388 VAL SER HIS HIS PRO PRO ILE SER ALA CYS HIS ALA GLU SEQRES 12 B 388 SER ARG ASN PHE VAL PHE TRP GLN ASP VAL ARG TRP LYS SEQRES 13 B 388 ASN LYS PHE TRP GLY LYS SER MET GLU ILE VAL PRO ILE SEQRES 14 B 388 GLY THR THR HIS VAL THR LEU PRO VAL PHE GLY ASP HIS SEQRES 15 B 388 PHE GLU TRP ASN LYS VAL THR SER CYS ILE HIS ASN ILE SEQRES 16 B 388 LEU SER GLY GLN ARG TRP ILE GLU HIS TYR GLY GLU ILE SEQRES 17 B 388 VAL ILE LYS ASN LEU HIS ASP ASP SER CYS TYR CYS LYS SEQRES 18 B 388 VAL ASN PHE ILE LYS ALA LYS TYR TRP SER THR ASN ALA SEQRES 19 B 388 HIS GLU ILE GLU GLY THR VAL PHE ASP ARG SER GLY LYS SEQRES 20 B 388 ALA VAL HIS ARG LEU PHE GLY LYS TRP HIS GLU SER ILE SEQRES 21 B 388 TYR CYS GLY GLY GLY SER SER SER ALA CYS VAL TRP ARG SEQRES 22 B 388 ALA ASN PRO MET PRO LYS GLY TYR GLU GLN TYR TYR SER SEQRES 23 B 388 PHE THR GLN PHE ALA LEU GLU LEU ASN GLU MET ASP PRO SEQRES 24 B 388 SER SER LYS SER LEU LEU PRO PRO THR ASP THR ARG PHE SEQRES 25 B 388 ARG PRO ASP GLN ARG PHE LEU GLU GLU GLY ASN LEU GLU SEQRES 26 B 388 GLU ALA GLU ILE GLN LYS GLN ARG ILE GLU GLN LEU GLN SEQRES 27 B 388 ARG GLU ARG ARG ARG VAL LEU GLU GLU ASN HIS VAL GLU SEQRES 28 B 388 HIS GLN PRO ARG PHE PHE ARG LYS SER ASP GLY SER TRP SEQRES 29 B 388 VAL SER ASN GLY THR TYR LEU GLU LEU ARG LYS ASP LEU SEQRES 30 B 388 GLY PHE SER LYS LEU ASP HIS PRO VAL LEU TRP FORMUL 3 HOH *55(H2 O) HELIX 1 AA1 ILE A 526 ASN A 534 1 9 HELIX 2 AA2 ASP A 539 VAL A 543 5 5 HELIX 3 AA3 PRO A 546 ASN A 550 5 5 HELIX 4 AA4 ASN A 554 GLU A 562 1 9 HELIX 5 AA5 LEU A 563 TYR A 565 5 3 HELIX 6 AA6 SER A 566 ALA A 573 1 8 HELIX 7 AA7 SER A 577 SER A 595 1 19 HELIX 8 AA8 SER A 596 TYR A 598 5 3 HELIX 9 AA9 PRO A 675 GLY A 678 5 4 HELIX 10 AB1 GLY A 778 TYR A 783 5 6 HELIX 11 AB2 THR A 786 GLU A 791 1 6 HELIX 12 AB3 PRO A 797 LEU A 802 5 6 HELIX 13 AB4 ASP A 807 PHE A 810 5 4 HELIX 14 AB5 ARG A 811 GLU A 819 1 9 HELIX 15 AB6 ASN A 821 ASN A 846 1 26 HELIX 16 AB7 THR A 868 ASP A 875 1 8 HELIX 17 AB8 ASN B 525 ARG B 533 1 9 HELIX 18 AB9 ASN B 534 ILE B 536 5 3 HELIX 19 AC1 PRO B 546 GLU B 548 5 3 HELIX 20 AC2 THR B 555 GLU B 562 1 8 HELIX 21 AC3 LEU B 563 TYR B 565 5 3 HELIX 22 AC4 SER B 566 ALA B 573 1 8 HELIX 23 AC5 SER B 577 ALA B 592 1 16 HELIX 24 AC6 TYR B 593 ARG B 599 5 7 HELIX 25 AC7 PRO B 675 GLY B 678 5 4 HELIX 26 AC8 GLY B 778 TYR B 783 5 6 HELIX 27 AC9 THR B 786 ASN B 793 1 8 HELIX 28 AD1 SER B 798 LEU B 803 5 6 HELIX 29 AD2 ASP B 807 PHE B 810 5 4 HELIX 30 AD3 ARG B 811 GLU B 819 1 9 HELIX 31 AD4 ASN B 821 ASN B 846 1 26 HELIX 32 AD5 THR B 868 ASP B 875 1 8 SHEET 1 AA1 5 THR A 612 ARG A 617 0 SHEET 2 AA1 5 PHE A 622 SER A 630 -1 O PHE A 624 N CYS A 615 SHEET 3 AA1 5 ILE A 635 SER A 642 -1 O HIS A 639 N PHE A 625 SHEET 4 AA1 5 VAL A 646 TRP A 653 -1 O GLN A 649 N CYS A 638 SHEET 5 AA1 5 PRO A 666 ILE A 667 -1 O ILE A 667 N ARG A 652 SHEET 1 AA212 THR A 612 ARG A 617 0 SHEET 2 AA212 PHE A 622 SER A 630 -1 O PHE A 624 N CYS A 615 SHEET 3 AA212 ILE A 635 SER A 642 -1 O HIS A 639 N PHE A 625 SHEET 4 AA212 VAL A 646 TRP A 653 -1 O GLN A 649 N CYS A 638 SHEET 5 AA212 THR A 669 LEU A 674 -1 O HIS A 671 N TRP A 648 SHEET 6 AA212 ASP A 679 ASN A 684 -1 O PHE A 681 N VAL A 672 SHEET 7 AA212 GLU A 705 ASN A 710 -1 O LYS A 709 N GLU A 682 SHEET 8 AA212 CYS A 716 PHE A 722 -1 O VAL A 720 N ILE A 706 SHEET 9 AA212 GLU A 734 ASP A 741 -1 O GLU A 736 N ASN A 721 SHEET 10 AA212 ALA A 746 LYS A 753 -1 O LEU A 750 N GLY A 737 SHEET 11 AA212 SER A 757 CYS A 760 -1 O TYR A 759 N PHE A 751 SHEET 12 AA212 ALA A 767 ARG A 771 -1 O TRP A 770 N ILE A 758 SHEET 1 AA3 4 LYS A 656 PHE A 657 0 SHEET 2 AA3 4 MET A 662 ILE A 664 -1 O GLU A 663 N LYS A 656 SHEET 3 AA3 4 THR A 687 HIS A 691 -1 O ILE A 690 N MET A 662 SHEET 4 AA3 4 TRP A 699 TYR A 703 -1 O TYR A 703 N THR A 687 SHEET 1 AA4 2 PHE A 855 SER A 858 0 SHEET 2 AA4 2 SER A 862 SER A 865 -1 O VAL A 864 N ARG A 856 SHEET 1 AA5 2 ASN B 550 ASN B 554 0 SHEET 2 AA5 2 LYS B 603 PHE B 605 1 O PHE B 605 N LEU B 553 SHEET 1 AA612 THR B 612 ARG B 617 0 SHEET 2 AA612 PHE B 622 SER B 630 -1 O PHE B 622 N ARG B 617 SHEET 3 AA612 ILE B 635 GLU B 641 -1 O ILE B 635 N SER B 630 SHEET 4 AA612 VAL B 646 PHE B 657 -1 O PHE B 647 N ALA B 640 SHEET 5 AA612 SER B 661 ILE B 667 -1 O GLU B 663 N LYS B 656 SHEET 6 AA612 THR B 687 HIS B 691 -1 O SER B 688 N ILE B 664 SHEET 7 AA612 TRP B 699 ASN B 710 -1 O GLU B 701 N CYS B 689 SHEET 8 AA612 ASP B 713 PHE B 722 -1 O CYS B 718 N ILE B 708 SHEET 9 AA612 GLU B 734 ASP B 741 -1 O THR B 738 N LYS B 719 SHEET 10 AA612 ALA B 746 LYS B 753 -1 O VAL B 747 N VAL B 739 SHEET 11 AA612 SER B 757 CYS B 760 -1 O SER B 757 N LYS B 753 SHEET 12 AA612 ALA B 767 ARG B 771 -1 O TRP B 770 N ILE B 758 SHEET 1 AA712 THR B 612 ARG B 617 0 SHEET 2 AA712 PHE B 622 SER B 630 -1 O PHE B 622 N ARG B 617 SHEET 3 AA712 ILE B 635 GLU B 641 -1 O ILE B 635 N SER B 630 SHEET 4 AA712 VAL B 646 PHE B 657 -1 O PHE B 647 N ALA B 640 SHEET 5 AA712 THR B 669 LEU B 674 -1 O THR B 673 N VAL B 646 SHEET 6 AA712 ASP B 679 ASN B 684 -1 O PHE B 681 N VAL B 672 SHEET 7 AA712 TRP B 699 ASN B 710 -1 O LYS B 709 N GLU B 682 SHEET 8 AA712 ASP B 713 PHE B 722 -1 O CYS B 718 N ILE B 708 SHEET 9 AA712 GLU B 734 ASP B 741 -1 O THR B 738 N LYS B 719 SHEET 10 AA712 ALA B 746 LYS B 753 -1 O VAL B 747 N VAL B 739 SHEET 11 AA712 SER B 757 CYS B 760 -1 O SER B 757 N LYS B 753 SHEET 12 AA712 ALA B 767 ARG B 771 -1 O TRP B 770 N ILE B 758 SHEET 1 AA8 2 PHE B 855 SER B 858 0 SHEET 2 AA8 2 SER B 862 SER B 865 -1 O VAL B 864 N ARG B 856 CISPEP 1 HIS A 632 PRO A 633 0 -7.92 CISPEP 2 HIS B 632 PRO B 633 0 -1.95 CRYST1 95.912 95.912 188.897 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010426 0.006020 0.000000 0.00000 SCALE2 0.000000 0.012039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005294 0.00000