HEADER STRUCTURAL PROTEIN 10-NOV-20 7DFW TITLE CRYO_EM STRUCTURE OF DELTA N-NPC1L1-CLR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NPC1-LIKE INTRACELLULAR CHOLESTEROL TRANSPORTER 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPC1L1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS CHOLESTEROL, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR M.HU,S.SUN REVDAT 2 13-NOV-24 7DFW 1 REMARK REVDAT 1 11-AUG-21 7DFW 0 JRNL AUTH M.HU,F.YANG,Y.HUANG,X.YOU,D.LIU,S.SUN,S.F.SUI JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF HUMAN JRNL TITL 2 NPC1L1-MEDIATED CHOLESTEROL UPTAKE. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34272236 JRNL DOI 10.1126/SCIADV.ABG3188 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.690 REMARK 3 NUMBER OF PARTICLES : 191595 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7DFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019294. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF DELTA N-NPC1L1 WITH REMARK 245 CLR REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I, L, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 8 REMARK 465 TRP A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 TRP A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 ARG A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 GLN A 20 REMARK 465 SER A 21 REMARK 465 GLU A 22 REMARK 465 PRO A 23 REMARK 465 TYR A 24 REMARK 465 THR A 25 REMARK 465 THR A 26 REMARK 465 ILE A 27 REMARK 465 HIS A 28 REMARK 465 GLN A 29 REMARK 465 PRO A 30 REMARK 465 GLY A 31 REMARK 465 TYR A 32 REMARK 465 CYS A 33 REMARK 465 ALA A 34 REMARK 465 PHE A 35 REMARK 465 TYR A 36 REMARK 465 ASP A 37 REMARK 465 GLU A 38 REMARK 465 CYS A 39 REMARK 465 GLY A 40 REMARK 465 LYS A 41 REMARK 465 ASN A 42 REMARK 465 PRO A 43 REMARK 465 GLU A 44 REMARK 465 LEU A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 LEU A 49 REMARK 465 MET A 50 REMARK 465 THR A 51 REMARK 465 LEU A 52 REMARK 465 SER A 53 REMARK 465 ASN A 54 REMARK 465 VAL A 55 REMARK 465 SER A 56 REMARK 465 CYS A 57 REMARK 465 LEU A 58 REMARK 465 SER A 59 REMARK 465 ASN A 60 REMARK 465 THR A 61 REMARK 465 PRO A 62 REMARK 465 ALA A 63 REMARK 465 ARG A 64 REMARK 465 LYS A 65 REMARK 465 ILE A 66 REMARK 465 THR A 67 REMARK 465 GLY A 68 REMARK 465 ASP A 69 REMARK 465 HIS A 70 REMARK 465 LEU A 71 REMARK 465 ILE A 72 REMARK 465 LEU A 73 REMARK 465 LEU A 74 REMARK 465 GLN A 75 REMARK 465 LYS A 76 REMARK 465 ILE A 77 REMARK 465 CYS A 78 REMARK 465 PRO A 79 REMARK 465 ARG A 80 REMARK 465 LEU A 81 REMARK 465 TYR A 82 REMARK 465 THR A 83 REMARK 465 GLY A 84 REMARK 465 PRO A 85 REMARK 465 ASN A 86 REMARK 465 THR A 87 REMARK 465 GLN A 88 REMARK 465 ALA A 89 REMARK 465 CYS A 90 REMARK 465 CYS A 91 REMARK 465 SER A 92 REMARK 465 ALA A 93 REMARK 465 LYS A 94 REMARK 465 GLN A 95 REMARK 465 LEU A 96 REMARK 465 VAL A 97 REMARK 465 SER A 98 REMARK 465 LEU A 99 REMARK 465 GLU A 100 REMARK 465 ALA A 101 REMARK 465 SER A 102 REMARK 465 LEU A 103 REMARK 465 SER A 104 REMARK 465 ILE A 105 REMARK 465 THR A 106 REMARK 465 LYS A 107 REMARK 465 ALA A 108 REMARK 465 LEU A 109 REMARK 465 LEU A 110 REMARK 465 THR A 111 REMARK 465 ARG A 112 REMARK 465 CYS A 113 REMARK 465 PRO A 114 REMARK 465 ALA A 115 REMARK 465 CYS A 116 REMARK 465 SER A 117 REMARK 465 ASP A 118 REMARK 465 ASN A 119 REMARK 465 PHE A 120 REMARK 465 VAL A 121 REMARK 465 ASN A 122 REMARK 465 LEU A 123 REMARK 465 HIS A 124 REMARK 465 CYS A 125 REMARK 465 HIS A 126 REMARK 465 ASN A 127 REMARK 465 THR A 128 REMARK 465 CYS A 129 REMARK 465 SER A 130 REMARK 465 PRO A 131 REMARK 465 ASN A 132 REMARK 465 GLN A 133 REMARK 465 SER A 134 REMARK 465 LEU A 135 REMARK 465 PHE A 136 REMARK 465 ILE A 137 REMARK 465 ASN A 138 REMARK 465 VAL A 139 REMARK 465 THR A 140 REMARK 465 ARG A 141 REMARK 465 VAL A 142 REMARK 465 ALA A 143 REMARK 465 GLN A 144 REMARK 465 LEU A 145 REMARK 465 GLY A 146 REMARK 465 ALA A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 465 LEU A 150 REMARK 465 PRO A 151 REMARK 465 ALA A 152 REMARK 465 VAL A 153 REMARK 465 VAL A 154 REMARK 465 ALA A 155 REMARK 465 TYR A 156 REMARK 465 GLU A 157 REMARK 465 ALA A 158 REMARK 465 PHE A 159 REMARK 465 TYR A 160 REMARK 465 GLN A 161 REMARK 465 HIS A 162 REMARK 465 SER A 163 REMARK 465 PHE A 164 REMARK 465 ALA A 165 REMARK 465 GLU A 166 REMARK 465 GLN A 167 REMARK 465 SER A 168 REMARK 465 TYR A 169 REMARK 465 ASP A 170 REMARK 465 SER A 171 REMARK 465 CYS A 172 REMARK 465 SER A 173 REMARK 465 ARG A 174 REMARK 465 VAL A 175 REMARK 465 ARG A 176 REMARK 465 VAL A 177 REMARK 465 PRO A 178 REMARK 465 ALA A 179 REMARK 465 ALA A 180 REMARK 465 ALA A 181 REMARK 465 THR A 182 REMARK 465 LEU A 183 REMARK 465 ALA A 184 REMARK 465 VAL A 185 REMARK 465 GLY A 186 REMARK 465 THR A 187 REMARK 465 MET A 188 REMARK 465 CYS A 189 REMARK 465 GLY A 190 REMARK 465 VAL A 191 REMARK 465 TYR A 192 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 ALA A 195 REMARK 465 LEU A 196 REMARK 465 CYS A 197 REMARK 465 ASN A 198 REMARK 465 ALA A 199 REMARK 465 GLN A 200 REMARK 465 ARG A 201 REMARK 465 TRP A 202 REMARK 465 LEU A 203 REMARK 465 ASN A 204 REMARK 465 PHE A 205 REMARK 465 GLN A 206 REMARK 465 GLY A 207 REMARK 465 ASP A 208 REMARK 465 THR A 209 REMARK 465 GLY A 210 REMARK 465 ASN A 211 REMARK 465 GLY A 212 REMARK 465 LEU A 213 REMARK 465 ALA A 214 REMARK 465 PRO A 215 REMARK 465 LEU A 216 REMARK 465 ASP A 217 REMARK 465 ILE A 218 REMARK 465 THR A 219 REMARK 465 PHE A 220 REMARK 465 HIS A 221 REMARK 465 LEU A 222 REMARK 465 LEU A 223 REMARK 465 GLU A 224 REMARK 465 PRO A 225 REMARK 465 GLY A 226 REMARK 465 GLN A 227 REMARK 465 ALA A 228 REMARK 465 VAL A 229 REMARK 465 GLY A 230 REMARK 465 SER A 231 REMARK 465 GLY A 232 REMARK 465 ILE A 233 REMARK 465 GLN A 234 REMARK 465 PRO A 235 REMARK 465 LEU A 236 REMARK 465 ASN A 237 REMARK 465 GLU A 238 REMARK 465 GLY A 239 REMARK 465 VAL A 240 REMARK 465 ALA A 241 REMARK 465 ARG A 242 REMARK 465 CYS A 243 REMARK 465 ASN A 244 REMARK 465 GLU A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 GLY A 248 REMARK 465 ASP A 249 REMARK 465 ASP A 250 REMARK 465 VAL A 251 REMARK 465 ALA A 252 REMARK 465 THR A 253 REMARK 465 CYS A 254 REMARK 465 SER A 255 REMARK 465 CYS A 256 REMARK 465 GLN A 257 REMARK 465 ASP A 258 REMARK 465 CYS A 259 REMARK 465 ALA A 260 REMARK 465 ALA A 261 REMARK 465 SER A 262 REMARK 465 CYS A 263 REMARK 465 PRO A 264 REMARK 465 ALA A 265 REMARK 465 ILE A 266 REMARK 465 ALA A 267 REMARK 465 ARG A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 ALA A 271 REMARK 465 LEU A 272 REMARK 465 ASP A 273 REMARK 465 SER A 274 REMARK 465 THR A 275 REMARK 465 PHE A 276 REMARK 465 TYR A 277 REMARK 465 LEU A 278 REMARK 465 GLY A 279 REMARK 465 GLN A 280 REMARK 465 MET A 281 REMARK 465 PRO A 282 REMARK 465 GLY A 283 REMARK 465 SER A 284 REMARK 465 LEU A 285 REMARK 465 VAL A 286 REMARK 465 LEU A 287 REMARK 465 ILE A 288 REMARK 465 ILE A 289 REMARK 465 ILE A 290 REMARK 465 LEU A 291 REMARK 465 CYS A 292 REMARK 465 SER A 293 REMARK 465 VAL A 294 REMARK 465 PHE A 295 REMARK 465 ALA A 296 REMARK 465 VAL A 297 REMARK 465 VAL A 298 REMARK 465 THR A 299 REMARK 465 ILE A 300 REMARK 465 LEU A 301 REMARK 465 LEU A 302 REMARK 465 VAL A 303 REMARK 465 GLY A 304 REMARK 465 PHE A 305 REMARK 465 ARG A 306 REMARK 465 VAL A 307 REMARK 465 ALA A 308 REMARK 465 PRO A 309 REMARK 465 ALA A 310 REMARK 465 ARG A 311 REMARK 465 ASP A 312 REMARK 465 LYS A 313 REMARK 465 SER A 314 REMARK 465 LYS A 315 REMARK 465 MET A 316 REMARK 465 VAL A 317 REMARK 465 ASP A 318 REMARK 465 PRO A 319 REMARK 465 LYS A 320 REMARK 465 LYS A 321 REMARK 465 GLY A 322 REMARK 465 THR A 323 REMARK 465 SER A 324 REMARK 465 LEU A 325 REMARK 465 SER A 326 REMARK 465 ASP A 327 REMARK 465 LYS A 328 REMARK 465 LEU A 329 REMARK 465 SER A 330 REMARK 465 PHE A 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 624 OG SER A 881 2.18 REMARK 500 OD2 ASP A 534 OG1 THR A 536 2.19 REMARK 500 O ALA A 365 OH TYR A 689 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 517 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 798 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 351 64.53 -119.36 REMARK 500 LEU A 412 -64.22 -96.60 REMARK 500 GLU A 460 50.67 -94.20 REMARK 500 ASN A 476 67.83 -162.43 REMARK 500 ALA A 539 54.68 -93.15 REMARK 500 TYR A 654 54.12 -95.96 REMARK 500 CYS A 810 53.63 -91.70 REMARK 500 LYS A 814 68.46 63.73 REMARK 500 LEU A 818 81.95 61.92 REMARK 500 HIS A 866 31.39 -94.82 REMARK 500 ASP A 880 57.04 -94.13 REMARK 500 PHE A 910 -7.64 75.74 REMARK 500 ALA A 923 62.47 63.67 REMARK 500 SER A 964 94.39 -161.01 REMARK 500 CYS A 966 -53.17 -120.18 REMARK 500 LYS A 978 -74.06 -67.53 REMARK 500 PHE A 979 135.13 -174.61 REMARK 500 THR A 997 -9.24 80.55 REMARK 500 THR A1107 39.72 -140.24 REMARK 500 THR A1193 59.96 -98.74 REMARK 500 LEU A1229 36.80 -98.39 REMARK 500 LYS A1231 -6.58 74.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P5S A 1308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30666 RELATED DB: EMDB REMARK 900 DELTA N-NPC1L1-CLR DBREF1 7DFW A 1 1288 UNP A0A0C4DFX6_HUMAN DBREF2 7DFW A A0A0C4DFX6 1 1288 SEQRES 1 A 1288 MET ALA GLU ALA GLY LEU ARG GLY TRP LEU LEU TRP ALA SEQRES 2 A 1288 LEU LEU LEU ARG LEU ALA GLN SER GLU PRO TYR THR THR SEQRES 3 A 1288 ILE HIS GLN PRO GLY TYR CYS ALA PHE TYR ASP GLU CYS SEQRES 4 A 1288 GLY LYS ASN PRO GLU LEU SER GLY SER LEU MET THR LEU SEQRES 5 A 1288 SER ASN VAL SER CYS LEU SER ASN THR PRO ALA ARG LYS SEQRES 6 A 1288 ILE THR GLY ASP HIS LEU ILE LEU LEU GLN LYS ILE CYS SEQRES 7 A 1288 PRO ARG LEU TYR THR GLY PRO ASN THR GLN ALA CYS CYS SEQRES 8 A 1288 SER ALA LYS GLN LEU VAL SER LEU GLU ALA SER LEU SER SEQRES 9 A 1288 ILE THR LYS ALA LEU LEU THR ARG CYS PRO ALA CYS SER SEQRES 10 A 1288 ASP ASN PHE VAL ASN LEU HIS CYS HIS ASN THR CYS SER SEQRES 11 A 1288 PRO ASN GLN SER LEU PHE ILE ASN VAL THR ARG VAL ALA SEQRES 12 A 1288 GLN LEU GLY ALA GLY GLN LEU PRO ALA VAL VAL ALA TYR SEQRES 13 A 1288 GLU ALA PHE TYR GLN HIS SER PHE ALA GLU GLN SER TYR SEQRES 14 A 1288 ASP SER CYS SER ARG VAL ARG VAL PRO ALA ALA ALA THR SEQRES 15 A 1288 LEU ALA VAL GLY THR MET CYS GLY VAL TYR GLY SER ALA SEQRES 16 A 1288 LEU CYS ASN ALA GLN ARG TRP LEU ASN PHE GLN GLY ASP SEQRES 17 A 1288 THR GLY ASN GLY LEU ALA PRO LEU ASP ILE THR PHE HIS SEQRES 18 A 1288 LEU LEU GLU PRO GLY GLN ALA VAL GLY SER GLY ILE GLN SEQRES 19 A 1288 PRO LEU ASN GLU GLY VAL ALA ARG CYS ASN GLU SER GLN SEQRES 20 A 1288 GLY ASP ASP VAL ALA THR CYS SER CYS GLN ASP CYS ALA SEQRES 21 A 1288 ALA SER CYS PRO ALA ILE ALA ARG PRO GLN ALA LEU ASP SEQRES 22 A 1288 SER THR PHE TYR LEU GLY GLN MET PRO GLY SER LEU VAL SEQRES 23 A 1288 LEU ILE ILE ILE LEU CYS SER VAL PHE ALA VAL VAL THR SEQRES 24 A 1288 ILE LEU LEU VAL GLY PHE ARG VAL ALA PRO ALA ARG ASP SEQRES 25 A 1288 LYS SER LYS MET VAL ASP PRO LYS LYS GLY THR SER LEU SEQRES 26 A 1288 SER ASP LYS LEU SER PHE SER THR HIS THR LEU LEU GLY SEQRES 27 A 1288 GLN PHE PHE GLN GLY TRP GLY THR TRP VAL ALA SER TRP SEQRES 28 A 1288 PRO LEU THR ILE LEU VAL LEU SER VAL ILE PRO VAL VAL SEQRES 29 A 1288 ALA LEU ALA ALA GLY LEU VAL PHE THR GLU LEU THR THR SEQRES 30 A 1288 ASP PRO VAL GLU LEU TRP SER ALA PRO ASN SER GLN ALA SEQRES 31 A 1288 ARG SER GLU LYS ALA PHE HIS ASP GLN HIS PHE GLY PRO SEQRES 32 A 1288 PHE PHE ARG THR ASN GLN VAL ILE LEU THR ALA PRO ASN SEQRES 33 A 1288 ARG SER SER TYR ARG TYR ASP SER LEU LEU LEU GLY PRO SEQRES 34 A 1288 LYS ASN PHE SER GLY ILE LEU ASP LEU ASP LEU LEU LEU SEQRES 35 A 1288 GLU LEU LEU GLU LEU GLN GLU ARG LEU ARG HIS LEU GLN SEQRES 36 A 1288 VAL TRP SER PRO GLU ALA GLN ARG ASN ILE SER LEU GLN SEQRES 37 A 1288 ASP ILE CYS TYR ALA PRO LEU ASN PRO ASP ASN THR SER SEQRES 38 A 1288 LEU TYR ASP CYS CYS ILE ASN SER LEU LEU GLN TYR PHE SEQRES 39 A 1288 GLN ASN ASN ARG THR LEU LEU LEU LEU THR ALA ASN GLN SEQRES 40 A 1288 THR LEU MET GLY GLN THR SER GLN VAL ASP TRP LYS ASP SEQRES 41 A 1288 HIS PHE LEU TYR CYS ALA ASN ALA PRO LEU THR PHE LYS SEQRES 42 A 1288 ASP GLY THR ALA LEU ALA LEU SER CYS MET ALA ASP TYR SEQRES 43 A 1288 GLY ALA PRO VAL PHE PRO PHE LEU ALA ILE GLY GLY TYR SEQRES 44 A 1288 LYS GLY LYS ASP TYR SER GLU ALA GLU ALA LEU ILE MET SEQRES 45 A 1288 THR PHE SER LEU ASN ASN TYR PRO ALA GLY ASP PRO ARG SEQRES 46 A 1288 LEU ALA GLN ALA LYS LEU TRP GLU GLU ALA PHE LEU GLU SEQRES 47 A 1288 GLU MET ARG ALA PHE GLN ARG ARG MET ALA GLY MET PHE SEQRES 48 A 1288 GLN VAL THR PHE MET ALA GLU ARG SER LEU GLU ASP GLU SEQRES 49 A 1288 ILE ASN ARG THR THR ALA GLU ASP LEU PRO ILE PHE ALA SEQRES 50 A 1288 THR SER TYR ILE VAL ILE PHE LEU TYR ILE SER LEU ALA SEQRES 51 A 1288 LEU GLY SER TYR SER SER TRP SER ARG VAL MET VAL ASP SEQRES 52 A 1288 SER LYS ALA THR LEU GLY LEU GLY GLY VAL ALA VAL VAL SEQRES 53 A 1288 LEU GLY ALA VAL MET ALA ALA MET GLY PHE PHE SER TYR SEQRES 54 A 1288 LEU GLY ILE ARG SER SER LEU VAL ILE LEU GLN VAL VAL SEQRES 55 A 1288 PRO PHE LEU VAL LEU SER VAL GLY ALA ASP ASN ILE PHE SEQRES 56 A 1288 ILE PHE VAL LEU GLU TYR GLN ARG LEU PRO ARG ARG PRO SEQRES 57 A 1288 GLY GLU PRO ARG GLU VAL HIS ILE GLY ARG ALA LEU GLY SEQRES 58 A 1288 ARG VAL ALA PRO SER MET LEU LEU CYS SER LEU SER GLU SEQRES 59 A 1288 ALA ILE CYS PHE PHE LEU GLY ALA LEU THR PRO MET PRO SEQRES 60 A 1288 ALA VAL ARG THR PHE ALA LEU THR SER GLY LEU ALA VAL SEQRES 61 A 1288 ILE LEU ASP PHE LEU LEU GLN MET SER ALA PHE VAL ALA SEQRES 62 A 1288 LEU LEU SER LEU ASP SER LYS ARG GLN GLU ALA SER ARG SEQRES 63 A 1288 LEU ASP VAL CYS CYS CYS VAL LYS PRO GLN GLU LEU PRO SEQRES 64 A 1288 PRO PRO GLY GLN GLY GLU GLY LEU LEU LEU GLY PHE PHE SEQRES 65 A 1288 GLN LYS ALA TYR ALA PRO PHE LEU LEU HIS TRP ILE THR SEQRES 66 A 1288 ARG GLY VAL VAL LEU LEU LEU PHE LEU ALA LEU PHE GLY SEQRES 67 A 1288 VAL SER LEU TYR SER MET CYS HIS ILE SER VAL GLY LEU SEQRES 68 A 1288 ASP GLN GLU LEU ALA LEU PRO LYS ASP SER TYR LEU LEU SEQRES 69 A 1288 ASP TYR PHE LEU PHE LEU ASN ARG TYR PHE GLU VAL GLY SEQRES 70 A 1288 ALA PRO VAL TYR PHE VAL THR THR LEU GLY TYR ASN PHE SEQRES 71 A 1288 SER SER GLU ALA GLY MET ASN ALA ILE CYS SER SER ALA SEQRES 72 A 1288 GLY CYS ASN ASN PHE SER PHE THR GLN LYS ILE GLN TYR SEQRES 73 A 1288 ALA THR GLU PHE PRO GLU GLN SER TYR LEU ALA ILE PRO SEQRES 74 A 1288 ALA SER SER TRP VAL ASP ASP PHE ILE ASP TRP LEU THR SEQRES 75 A 1288 PRO SER SER CYS CYS ARG LEU TYR ILE SER GLY PRO ASN SEQRES 76 A 1288 LYS ASP LYS PHE CYS PRO SER THR VAL ASN SER LEU ASN SEQRES 77 A 1288 CYS LEU LYS ASN CYS MET SER ILE THR MET GLY SER VAL SEQRES 78 A 1288 ARG PRO SER VAL GLU GLN PHE HIS LYS TYR LEU PRO TRP SEQRES 79 A 1288 PHE LEU ASN ASP ARG PRO ASN ILE LYS CYS PRO LYS GLY SEQRES 80 A 1288 GLY LEU ALA ALA TYR SER THR SER VAL ASN LEU THR SER SEQRES 81 A 1288 ASP GLY GLN VAL LEU ALA SER ARG PHE MET ALA TYR HIS SEQRES 82 A 1288 LYS PRO LEU LYS ASN SER GLN ASP TYR THR GLU ALA LEU SEQRES 83 A 1288 ARG ALA ALA ARG GLU LEU ALA ALA ASN ILE THR ALA ASP SEQRES 84 A 1288 LEU ARG LYS VAL PRO GLY THR ASP PRO ALA PHE GLU VAL SEQRES 85 A 1288 PHE PRO TYR THR ILE THR ASN VAL PHE TYR GLU GLN TYR SEQRES 86 A 1288 LEU THR ILE LEU PRO GLU GLY LEU PHE MET LEU SER LEU SEQRES 87 A 1288 CYS LEU VAL PRO THR PHE ALA VAL SER CYS LEU LEU LEU SEQRES 88 A 1288 GLY LEU ASP LEU ARG SER GLY LEU LEU ASN LEU LEU SER SEQRES 89 A 1288 ILE VAL MET ILE LEU VAL ASP THR VAL GLY PHE MET ALA SEQRES 90 A 1288 LEU TRP GLY ILE SER TYR ASN ALA VAL SER LEU ILE ASN SEQRES 91 A 1288 LEU VAL SER ALA VAL GLY MET SER VAL GLU PHE VAL SER SEQRES 92 A 1288 HIS ILE THR ARG SER PHE ALA ILE SER THR LYS PRO THR SEQRES 93 A 1288 TRP LEU GLU ARG ALA LYS GLU ALA THR ILE SER MET GLY SEQRES 94 A 1288 SER ALA VAL PHE ALA GLY VAL ALA MET THR ASN LEU PRO SEQRES 95 A 1288 GLY ILE LEU VAL LEU GLY LEU ALA LYS ALA GLN LEU ILE SEQRES 96 A 1288 GLN ILE PHE PHE PHE ARG LEU ASN LEU LEU ILE THR LEU SEQRES 97 A 1288 LEU GLY LEU LEU HIS GLY LEU VAL PHE LEU PRO VAL ILE SEQRES 98 A 1288 LEU SER TYR VAL GLY PRO ASP VAL ASN PRO ALA LEU ALA SEQRES 99 A 1288 LEU GLU GLN LYS ARG ALA GLU GLU ALA VAL ALA ALA VAL SEQRES 100 A 1288 MET HET NAG I 1 14 HET NAG I 2 14 HET NAG L 1 14 HET NAG L 2 14 HET NAG L 3 14 HET NAG S 1 14 HET NAG S 2 14 HET NAG S 3 14 HET NAG A1301 14 HET NAG A1302 14 HET NAG A1303 14 HET NAG A1304 14 HET NAG A1305 14 HET NAG A1306 14 HET NAG A1307 14 HET P5S A1308 121 HET LMT A1309 81 HET CLR A1310 28 HET CLR A1311 28 HET CLR A1312 28 HET CLR A1313 28 HET CLR A1314 74 HET CLR A1315 74 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM P5S O-[(R)-{[(2R)-2,3-BIS(OCTADECANOYLOXY) HETNAM 2 P5S PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM CLR CHOLESTEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN P5S PHOSPHATIDYL SERINE FORMUL 2 NAG 15(C8 H15 N O6) FORMUL 12 P5S C42 H82 N O10 P FORMUL 13 LMT C24 H46 O11 FORMUL 14 CLR 6(C27 H46 O) HELIX 1 AA1 HIS A 334 TRP A 351 1 18 HELIX 2 AA2 TRP A 351 ALA A 368 1 18 HELIX 3 AA3 PRO A 379 TRP A 383 5 5 HELIX 4 AA4 SER A 388 GLY A 402 1 15 HELIX 5 AA5 ASP A 437 HIS A 453 1 17 HELIX 6 AA6 SER A 466 CYS A 471 1 6 HELIX 7 AA7 SER A 489 GLN A 495 5 7 HELIX 8 AA8 ASN A 497 LEU A 502 1 6 HELIX 9 AA9 ASP A 517 ALA A 528 1 12 HELIX 10 AB1 PHE A 551 LEU A 554 5 4 HELIX 11 AB2 ASP A 563 ALA A 567 5 5 HELIX 12 AB3 PRO A 584 MET A 607 1 24 HELIX 13 AB4 ARG A 619 ASN A 626 1 8 HELIX 14 AB5 ASP A 632 ALA A 637 1 6 HELIX 15 AB6 ALA A 637 ILE A 647 1 11 HELIX 16 AB7 SER A 656 VAL A 660 5 5 HELIX 17 AB8 LYS A 665 LEU A 690 1 26 HELIX 18 AB9 SER A 695 LEU A 724 1 30 HELIX 19 AC1 PRO A 731 ALA A 762 1 32 HELIX 20 AC2 MET A 766 SER A 799 1 34 HELIX 21 AC3 PHE A 832 LEU A 841 1 10 HELIX 22 AC4 HIS A 842 MET A 864 1 23 HELIX 23 AC5 CYS A 865 ILE A 867 5 3 HELIX 24 AC6 ASP A 872 LEU A 877 5 6 HELIX 25 AC7 TYR A 882 PHE A 894 1 13 HELIX 26 AC8 SER A 912 ALA A 918 1 7 HELIX 27 AC9 SER A 929 GLU A 939 1 11 HELIX 28 AD1 SER A 952 LEU A 961 1 10 HELIX 29 AD2 SER A 1004 ASP A 1018 1 15 HELIX 30 AD3 ASN A 1058 ARG A 1081 1 24 HELIX 31 AD4 THR A 1098 GLU A 1103 1 6 HELIX 32 AD5 GLN A 1104 LEU A 1106 5 3 HELIX 33 AD6 THR A 1107 LEU A 1130 1 24 HELIX 34 AD7 ASP A 1134 TRP A 1159 1 26 HELIX 35 AD8 ASN A 1164 SER A 1178 1 15 HELIX 36 AD9 SER A 1178 ILE A 1191 1 14 HELIX 37 AE1 THR A 1196 VAL A 1226 1 31 HELIX 38 AE2 LEU A 1227 ALA A 1230 5 4 HELIX 39 AE3 ALA A 1232 PHE A 1239 1 8 HELIX 40 AE4 PHE A 1240 VAL A 1256 1 17 HELIX 41 AE5 PHE A 1257 VAL A 1265 1 9 HELIX 42 AE6 LEU A 1273 ALA A 1286 1 14 SHEET 1 AA1 3 ILE A 487 ASN A 488 0 SHEET 2 AA1 3 ALA A 569 LEU A 576 -1 O THR A 573 N ASN A 488 SHEET 3 AA1 3 ILE A 556 GLY A 557 -1 N GLY A 557 O ALA A 569 SHEET 1 AA2 4 ILE A 487 ASN A 488 0 SHEET 2 AA2 4 ALA A 569 LEU A 576 -1 O THR A 573 N ASN A 488 SHEET 3 AA2 4 ARG A 406 ILE A 411 -1 N ASN A 408 O PHE A 574 SHEET 4 AA2 4 THR A 614 MET A 616 -1 O THR A 614 N ILE A 411 SHEET 1 AA3 2 TYR A 420 ASP A 423 0 SHEET 2 AA3 2 PRO A 429 PHE A 432 -1 O PHE A 432 N TYR A 420 SHEET 1 AA4 2 VAL A 456 TRP A 457 0 SHEET 2 AA4 2 ASN A 464 ILE A 465 -1 O ILE A 465 N VAL A 456 SHEET 1 AA5 2 ALA A 505 THR A 508 0 SHEET 2 AA5 2 THR A 513 VAL A 516 -1 O SER A 514 N GLN A 507 SHEET 1 AA6 3 LEU A 946 SER A 951 0 SHEET 2 AA6 3 VAL A1044 HIS A1053 -1 O TYR A1052 N ALA A 947 SHEET 3 AA6 3 VAL A1036 LEU A1038 -1 N ASN A1037 O LEU A1045 SHEET 1 AA7 4 LEU A 946 SER A 951 0 SHEET 2 AA7 4 VAL A1044 HIS A1053 -1 O TYR A1052 N ALA A 947 SHEET 3 AA7 4 PRO A 899 THR A 904 -1 N PHE A 902 O PHE A1049 SHEET 4 AA7 4 VAL A1092 TYR A1095 -1 O PHE A1093 N VAL A 903 SHEET 1 AA8 2 ARG A 968 TYR A 970 0 SHEET 2 AA8 2 CYS A 989 ASN A 992 -1 O LYS A 991 N LEU A 969 SSBOND 1 CYS A 471 CYS A 485 1555 1555 2.03 SSBOND 2 CYS A 525 CYS A 542 1555 1555 2.03 SSBOND 3 CYS A 920 CYS A 925 1555 1555 2.03 SSBOND 4 CYS A 967 CYS A 993 1555 1555 2.03 SSBOND 5 CYS A 980 CYS A 989 1555 1555 2.03 LINK ND2 ASN A 416 C1 NAG A1304 1555 1555 1.44 LINK ND2 ASN A 431 C1 NAG A1301 1555 1555 1.44 LINK ND2 ASN A 464 C1 NAG A1302 1555 1555 1.43 LINK ND2 ASN A 479 C1 NAG A1305 1555 1555 1.44 LINK ND2 ASN A 497 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN A 506 C1 NAG A1303 1555 1555 1.44 LINK ND2 ASN A 909 C1 NAG L 1 1555 1555 1.44 LINK ND2 ASN A 927 C1 NAG A1306 1555 1555 1.44 LINK ND2 ASN A1037 C1 NAG S 1 1555 1555 1.44 LINK ND2 ASN A1075 C1 NAG A1307 1555 1555 1.44 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.44 LINK O4 NAG L 2 C1 NAG L 3 1555 1555 1.45 LINK O4 NAG S 1 C1 NAG S 2 1555 1555 1.44 LINK O3 NAG S 2 C1 NAG S 3 1555 1555 1.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000