HEADER STRUCTURAL PROTEIN 17-NOV-20 7DHX TITLE CRYSTAL STRUCTURE OF SARS-COV-2 RBD BINDING TO PANGOLIN ACE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANGOLIN ACE2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RECEPTOR BINDING DOMAIN (RBD); COMPND 9 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MANIS JAVANICA; SOURCE 3 ORGANISM_TAXID: 9974; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 8 2; SOURCE 9 ORGANISM_COMMON: 2019-NCOV; SOURCE 10 ORGANISM_TAXID: 2697049; SOURCE 11 GENE: S, 2; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ENVELOPE PROTEIN, COMPLEX, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.H.WANG,J.X.QI,L.L.WU REVDAT 2 29-NOV-23 7DHX 1 REMARK REVDAT 1 29-SEP-21 7DHX 0 JRNL AUTH L.WU,G.GAO,J.YAN,Q.WANG,S.NIU,Q.CHEN,J.QI,Y.ZHANG,S.JIAQI, JRNL AUTH 2 Y.SHI JRNL TITL MOLECULAR BASIS OF PANGOLIN ACE2 ENGAGED BY COVID-19 VIRUS JRNL REF CHIN.SCI.BULL. V. 66 73 2021 JRNL REFN ISSN 1001-6538 JRNL DOI 10.1360/TB-2020-1372 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 39596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9300 - 5.5300 0.99 2951 130 0.1760 0.1832 REMARK 3 2 5.5300 - 4.3900 1.00 2878 146 0.1527 0.1747 REMARK 3 3 4.3900 - 3.8400 1.00 2919 116 0.1573 0.2016 REMARK 3 4 3.8400 - 3.4900 1.00 2886 117 0.1831 0.2186 REMARK 3 5 3.4900 - 3.2400 1.00 2869 149 0.2015 0.2561 REMARK 3 6 3.2400 - 3.0500 0.99 2816 166 0.2136 0.2379 REMARK 3 7 3.0500 - 2.8900 0.99 2844 156 0.2167 0.2585 REMARK 3 8 2.8900 - 2.7700 0.99 2832 164 0.2194 0.2656 REMARK 3 9 2.7700 - 2.6600 0.99 2811 175 0.2291 0.2896 REMARK 3 10 2.6600 - 2.5700 0.99 2837 128 0.2356 0.2751 REMARK 3 11 2.5700 - 2.4900 0.98 2816 169 0.2386 0.2997 REMARK 3 12 2.4900 - 2.4200 0.95 2670 156 0.2525 0.2871 REMARK 3 13 2.4200 - 2.3600 0.74 2060 138 0.2530 0.3198 REMARK 3 14 2.3600 - 2.3000 0.49 1418 79 0.2475 0.2948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.283 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.028 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6593 REMARK 3 ANGLE : 0.563 8958 REMARK 3 CHIRALITY : 0.170 944 REMARK 3 PLANARITY : 0.005 1157 REMARK 3 DIHEDRAL : 25.471 2414 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 12.0857 11.9920 32.4753 REMARK 3 T TENSOR REMARK 3 T11: 0.1690 T22: 0.1079 REMARK 3 T33: 0.1668 T12: -0.0161 REMARK 3 T13: -0.0057 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.5238 L22: 0.1856 REMARK 3 L33: 0.8406 L12: 0.0648 REMARK 3 L13: 0.2356 L23: 0.2357 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: 0.0268 S13: -0.0750 REMARK 3 S21: 0.0721 S22: -0.0188 S23: -0.0296 REMARK 3 S31: -0.0063 S32: -0.0720 S33: 0.0091 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 39.6163 12.7361 72.1622 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.2583 REMARK 3 T33: 0.1695 T12: 0.0163 REMARK 3 T13: 0.0241 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.2804 L22: 0.3159 REMARK 3 L33: 0.2274 L12: 0.0048 REMARK 3 L13: -0.0692 L23: -0.0271 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.1862 S13: -0.0538 REMARK 3 S21: -0.0361 S22: 0.0378 S23: -0.0409 REMARK 3 S31: -0.0040 S32: 0.1186 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41945 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 51.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M POTASSIUM PHOSPHATE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.99800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.78200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.99800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.78200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 849 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 18 REMARK 465 GLY A 136 REMARK 465 ASN A 137 REMARK 465 PRO A 138 REMARK 465 HIS A 615 REMARK 465 HIS A 616 REMARK 465 HIS A 617 REMARK 465 HIS A 618 REMARK 465 ARG B 319 REMARK 465 VAL B 320 REMARK 465 GLN B 321 REMARK 465 PRO B 322 REMARK 465 THR B 323 REMARK 465 GLU B 324 REMARK 465 SER B 325 REMARK 465 ILE B 326 REMARK 465 VAL B 327 REMARK 465 ARG B 328 REMARK 465 PHE B 329 REMARK 465 PRO B 330 REMARK 465 ASN B 331 REMARK 465 ILE B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 TYR A 429 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 582 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 572 O HOH A 801 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 286 OE1 GLN B 474 3444 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 213 109.93 -50.86 REMARK 500 TYR A 252 67.30 -119.22 REMARK 500 ASP B 389 58.79 -96.60 REMARK 500 ASP B 428 31.05 -91.87 REMARK 500 ALA B 522 67.99 60.19 REMARK 500 CYS B 525 -62.27 -94.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 209 -12.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 374 NE2 REMARK 620 2 HIS A 378 NE2 96.5 REMARK 620 3 GLU A 402 OE2 97.7 105.3 REMARK 620 N 1 2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF ACE2 PROTEIN HAS BEEN DEPOSITED TO GENBANK WITH REMARK 999 ACCESSION ID XP_017505752.1. DBREF 7DHX A 18 618 PDB 7DHX 7DHX 18 618 DBREF 7DHX B 319 527 UNP P0DTC2 SPIKE_SARS2 319 527 SEQRES 1 A 601 GLN SER THR SER ASP GLU GLU ALA LYS THR PHE LEU GLU SEQRES 2 A 601 LYS PHE ASN SER GLU ALA GLU GLU LEU SER TYR GLN SER SEQRES 3 A 601 SER LEU ALA SER TRP ASN TYR ASN THR ASN ILE THR ASP SEQRES 4 A 601 GLU ASN VAL GLN LYS MET ASN VAL ALA GLY ALA LYS TRP SEQRES 5 A 601 SER THR PHE TYR GLU GLU GLN SER LYS ILE ALA LYS ASN SEQRES 6 A 601 TYR GLN LEU GLN ASN ILE GLN ASN ASP THR ILE LYS ARG SEQRES 7 A 601 GLN LEU GLN ALA LEU GLN LEU SER GLY SER SER ALA LEU SEQRES 8 A 601 SER ALA ASP LYS ASN GLN ARG LEU ASN THR ILE LEU ASN SEQRES 9 A 601 THR MET SER THR ILE TYR SER THR GLY LYS VAL CYS ASN SEQRES 10 A 601 PRO GLY ASN PRO GLN GLU CYS SER LEU LEU GLU PRO GLY SEQRES 11 A 601 LEU ASP ASN ILE MET GLU SER SER LYS ASP TYR ASN GLU SEQRES 12 A 601 ARG LEU TRP ALA TRP GLU GLY TRP ARG SER GLU VAL GLY SEQRES 13 A 601 LYS GLN LEU ARG PRO LEU TYR GLU GLU TYR VAL VAL LEU SEQRES 14 A 601 LYS ASN GLU MET ALA ARG ALA ASN HIS TYR GLU ASP TYR SEQRES 15 A 601 GLY ASP TYR TRP ARG GLY ASP TYR GLU ALA GLU GLY ALA SEQRES 16 A 601 ASN GLY TYR ASN TYR SER ARG ASP HIS LEU ILE GLU ASP SEQRES 17 A 601 VAL GLU HIS ILE PHE THR GLN ILE LYS PRO LEU TYR GLU SEQRES 18 A 601 HIS LEU HIS ALA TYR VAL ARG ALA LYS LEU MET ASP ASN SEQRES 19 A 601 TYR PRO SER HIS ILE SER PRO THR GLY CYS LEU PRO ALA SEQRES 20 A 601 HIS LEU LEU GLY ASP MET TRP GLY ARG PHE TRP THR ASN SEQRES 21 A 601 LEU TYR PRO LEU THR VAL PRO PHE ARG GLN LYS PRO ASN SEQRES 22 A 601 ILE ASP VAL THR ASP ALA MET VAL ASN GLN THR TRP ASP SEQRES 23 A 601 ALA ASN ARG ILE PHE LYS GLU ALA GLU LYS PHE PHE VAL SEQRES 24 A 601 SER VAL GLY LEU PRO LYS MET THR GLN THR PHE TRP GLU SEQRES 25 A 601 ASN SER MET LEU THR GLU PRO GLY ASP GLY ARG LYS VAL SEQRES 26 A 601 VAL CYS HIS PRO THR ALA TRP ASP LEU GLY LYS HIS ASP SEQRES 27 A 601 PHE ARG ILE LYS MET CYS THR LYS VAL THR MET ASP ASP SEQRES 28 A 601 PHE LEU THR ALA HIS HIS GLU MET GLY HIS ILE GLN TYR SEQRES 29 A 601 ASP MET ALA TYR ALA MET GLN PRO TYR LEU LEU ARG ASN SEQRES 30 A 601 GLY ALA ASN GLU GLY PHE HIS GLU ALA VAL GLY GLU ILE SEQRES 31 A 601 MET SER LEU SER ALA ALA THR PRO LYS HIS LEU LYS ASN SEQRES 32 A 601 ILE GLY LEU LEU PRO PRO ASP PHE TYR GLU ASP ASN GLU SEQRES 33 A 601 THR GLU ILE ASN PHE LEU LEU LYS GLN ALA LEU THR ILE SEQRES 34 A 601 VAL GLY THR LEU PRO PHE THR TYR MET LEU GLU LYS TRP SEQRES 35 A 601 ARG TRP MET VAL PHE SER GLY GLN ILE PRO LYS GLU GLN SEQRES 36 A 601 TRP MET LYS LYS TRP TRP GLU MET LYS ARG GLU ILE VAL SEQRES 37 A 601 GLY VAL VAL GLU PRO VAL PRO HIS ASP GLU THR TYR CYS SEQRES 38 A 601 ASP PRO ALA SER LEU PHE HIS VAL ALA ASN ASP TYR SER SEQRES 39 A 601 PHE ILE ARG TYR TYR THR ARG THR ILE TYR GLN PHE GLN SEQRES 40 A 601 PHE GLN GLU ALA LEU CYS GLN THR ALA LYS HIS GLU GLY SEQRES 41 A 601 PRO LEU HIS LYS CYS ASP ILE SER ASN SER ALA GLU ALA SEQRES 42 A 601 GLY GLN LYS LEU LEU GLN MET LEU SER LEU GLY LYS SER SEQRES 43 A 601 LYS PRO TRP THR LEU ALA LEU GLU ARG VAL VAL GLY THR SEQRES 44 A 601 LYS ASN MET ASP VAL ARG PRO LEU LEU ASN TYR PHE GLU SEQRES 45 A 601 PRO LEU LEU THR TRP LEU LYS GLU GLN ASN LYS ASN SER SEQRES 46 A 601 PHE VAL GLY TRP ASN THR ASP TRP SER PRO TYR ALA HIS SEQRES 47 A 601 HIS HIS HIS SEQRES 1 B 209 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 B 209 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 B 209 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 B 209 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 B 209 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 B 209 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 B 209 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 B 209 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 B 209 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 B 209 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 B 209 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 B 209 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 B 209 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 B 209 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 B 209 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 B 209 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 B 209 PRO HET NAG A 701 14 HET NAG A 702 14 HET ZN A 703 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *227(H2 O) HELIX 1 AA1 THR A 20 THR A 52 1 33 HELIX 2 AA2 THR A 55 LYS A 81 1 27 HELIX 3 AA3 ASN A 82 TYR A 83 5 2 HELIX 4 AA4 GLN A 84 ILE A 88 5 5 HELIX 5 AA5 ASN A 90 LEU A 102 1 13 HELIX 6 AA6 SER A 103 LEU A 108 5 6 HELIX 7 AA7 SER A 109 GLY A 130 1 22 HELIX 8 AA8 PRO A 146 SER A 155 1 10 HELIX 9 AA9 ASP A 157 ASN A 194 1 38 HELIX 10 AB1 ASP A 198 ARG A 204 1 7 HELIX 11 AB2 GLY A 205 GLU A 208 5 4 HELIX 12 AB3 SER A 218 TYR A 252 1 35 HELIX 13 AB4 TRP A 275 ASN A 277 5 3 HELIX 14 AB5 LEU A 278 VAL A 283 1 6 HELIX 15 AB6 VAL A 293 GLN A 300 1 8 HELIX 16 AB7 ASP A 303 VAL A 318 1 16 HELIX 17 AB8 THR A 324 SER A 331 1 8 HELIX 18 AB9 THR A 365 TYR A 385 1 21 HELIX 19 AC1 PRO A 389 ARG A 393 5 5 HELIX 20 AC2 GLY A 399 THR A 414 1 16 HELIX 21 AC3 THR A 414 ILE A 421 1 8 HELIX 22 AC4 ASP A 431 SER A 465 1 35 HELIX 23 AC5 PRO A 469 GLU A 471 5 3 HELIX 24 AC6 GLN A 472 ILE A 484 1 13 HELIX 25 AC7 ASP A 499 SER A 502 5 4 HELIX 26 AC8 LEU A 503 ASN A 508 1 6 HELIX 27 AC9 ILE A 513 ALA A 533 1 21 HELIX 28 AD1 PRO A 538 CYS A 542 5 5 HELIX 29 AD2 SER A 547 SER A 559 1 13 HELIX 30 AD3 PRO A 565 GLY A 575 1 11 HELIX 31 AD4 VAL A 581 PHE A 588 1 8 HELIX 32 AD5 PHE A 588 ASN A 599 1 12 HELIX 33 AD6 PRO B 337 ASN B 343 1 7 HELIX 34 AD7 TYR B 365 ASN B 370 1 6 HELIX 35 AD8 SER B 383 LEU B 387 5 5 HELIX 36 AD9 ASP B 405 ILE B 410 5 6 HELIX 37 AE1 GLY B 416 ASN B 422 1 7 HELIX 38 AE2 SER B 438 SER B 443 1 6 HELIX 39 AE3 GLY B 502 TYR B 505 5 4 SHEET 1 AA1 2 LYS A 131 CYS A 133 0 SHEET 2 AA1 2 CYS A 141 LEU A 143 -1 O SER A 142 N VAL A 132 SHEET 1 AA2 2 LEU A 262 PRO A 263 0 SHEET 2 AA2 2 VAL A 487 VAL A 488 1 O VAL A 488 N LEU A 262 SHEET 1 AA3 2 THR A 347 GLY A 352 0 SHEET 2 AA3 2 ASP A 355 LYS A 359 -1 O ARG A 357 N TRP A 349 SHEET 1 AA4 5 ASN B 354 ILE B 358 0 SHEET 2 AA4 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA4 5 PRO B 507 GLU B 516 -1 O TYR B 508 N ILE B 402 SHEET 4 AA4 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA4 5 THR B 376 TYR B 380 -1 N TYR B 380 O GLY B 431 SHEET 1 AA5 2 LEU B 452 ARG B 454 0 SHEET 2 AA5 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA6 2 TYR B 473 GLN B 474 0 SHEET 2 AA6 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SSBOND 1 CYS A 133 CYS A 141 1555 1555 2.05 SSBOND 2 CYS A 344 CYS A 361 1555 1555 2.03 SSBOND 3 CYS A 530 CYS A 542 1555 1555 2.03 SSBOND 4 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 5 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 6 CYS B 391 CYS B 525 1555 1555 2.03 SSBOND 7 CYS B 480 CYS B 488 1555 1555 2.03 LINK ND2 ASN A 53 C1 NAG A 701 1555 1555 1.44 LINK ND2 ASN A 90 C1 NAG A 702 1555 1555 1.44 LINK NE2 HIS A 374 ZN ZN A 703 1555 1555 2.10 LINK NE2 HIS A 378 ZN ZN A 703 1555 1555 2.10 LINK OE2 GLU A 402 ZN ZN A 703 1555 1555 2.00 CISPEP 1 GLU A 145 PRO A 146 0 -2.83 CRYST1 139.996 97.564 90.982 90.00 129.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007143 0.000000 0.005816 0.00000 SCALE2 0.000000 0.010250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014174 0.00000